BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0047.p (216 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777259.1| amino acid ABC transporter permease [Herbasp... 431 e-119 ref|YP_522304.1| amino acid ABC transporter permease [Rhodoferax... 286 2e-75 ref|ZP_04681593.1| amino acid ABC transporter, permease protein,... 276 2e-72 ref|YP_001526198.1| amino acid ABC transporter permease [Azorhiz... 270 1e-70 ref|YP_841321.1| ABC transporter permease [Ralstonia eutropha H1... 270 2e-70 ref|YP_003693666.1| polar amino acid ABC transporter inner membr... 269 2e-70 ref|ZP_08528169.1| ABC transporter, membrane spanning protein (a... 263 1e-68 ref|YP_918681.1| polar amino acid ABC transporter, inner membran... 263 1e-68 ref|YP_001525533.1| amino acid ABC transporter permease [Azorhiz... 263 2e-68 ref|NP_355976.1| ABC transporter, membrane spanning protein (ami... 263 2e-68 >ref|YP_003777259.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65351.1| ABC-type amino acid transport system, permease protein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 216/216 (100%), Positives = 216/216 (100%) Query: 1 MNAFSFLHVEYLLQAAVWTVVLSLVAFVFGGVAGFVIALWRVSPNAVLRGIASGYIQVVQ 60 MNAFSFLHVEYLLQAAVWTVVLSLVAFVFGGVAGFVIALWRVSPNAVLRGIASGYIQVVQ Sbjct: 1 MNAFSFLHVEYLLQAAVWTVVLSLVAFVFGGVAGFVIALWRVSPNAVLRGIASGYIQVVQ 60 Query: 61 GIPLLVILFVAYFGLAIAGFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASE 120 GIPLLVILFVAYFGLAIAGFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASE Sbjct: 61 GIPLLVILFVAYFGLAIAGFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASE 120 Query: 121 CLGFNRFEQLTKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTF 180 CLGFNRFEQLTKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTF Sbjct: 121 CLGFNRFEQLTKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTF 180 Query: 181 QPFTVFGCVALIYFCLCFPLSALSKHFERKLNVSHR 216 QPFTVFGCVALIYFCLCFPLSALSKHFERKLNVSHR Sbjct: 181 QPFTVFGCVALIYFCLCFPLSALSKHFERKLNVSHR 216 >ref|YP_522304.1| amino acid ABC transporter permease [Rhodoferax ferrireducens T118] gb|ABD68773.1| Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine [Rhodoferax ferrireducens T118] Length = 214 Score = 286 bits (732), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 137/212 (64%), Positives = 174/212 (82%) Query: 5 SFLHVEYLLQAAVWTVVLSLVAFVFGGVAGFVIALWRVSPNAVLRGIASGYIQVVQGIPL 64 S + ++YL AA+WTV L+L+A + G + GF IAL+RVSPN+VLR ++ YIQ +QGIPL Sbjct: 3 SGIQIQYLGVAALWTVGLTLMALIGGSILGFCIALFRVSPNSVLRYLSVVYIQTIQGIPL 62 Query: 65 LVILFVAYFGLAIAGFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASECLGF 124 LV+LF+AYFG +IAGF +P V ++F++Y AA+LGEIWRGCIQ VPK QWEAS LGF Sbjct: 63 LVLLFIAYFGFSIAGFNPSPFVTVVVAFSLYSAAYLGEIWRGCIQTVPKPQWEASGSLGF 122 Query: 125 NRFEQLTKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTFQPFT 184 NR++QL VI+PQA +IATPPTVGF+VQ+VKNTSLAS +GF++L+RAGQI+NN+TF+PF+ Sbjct: 123 NRYQQLRLVIIPQAFRIATPPTVGFLVQLVKNTSLASTVGFIELARAGQILNNTTFKPFS 182 Query: 185 VFGCVALIYFCLCFPLSALSKHFERKLNVSHR 216 VF VAL YF LCFPLS LSK ER LNV+HR Sbjct: 183 VFLLVALFYFGLCFPLSLLSKKLERSLNVAHR 214 >ref|ZP_04681593.1| amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family [Ochrobactrum intermedium LMG 3301] gb|EEQ92897.1| amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family [Ochrobactrum intermedium LMG 3301] Length = 231 Score = 276 bits (705), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 127/207 (61%), Positives = 169/207 (81%) Query: 2 NAFSFLHVEYLLQAAVWTVVLSLVAFVFGGVAGFVIALWRVSPNAVLRGIASGYIQVVQG 61 AF+ H+ +LL+ A+WTV+L+ +AF+ GG+ GF++AL R++P+ LR IA+ Y+Q++QG Sbjct: 3 TAFNHNHLIFLLEGALWTVILTGMAFIGGGIVGFIVALGRITPSRALRLIAATYVQLIQG 62 Query: 62 IPLLVILFVAYFGLAIAGFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASEC 121 PLLVI+F+ YFGL GF +TPL AAGIS IY +A+LGEIWRGC+++VPK QWE +EC Sbjct: 63 TPLLVIMFIIYFGLPTLGFSITPLFAAGISLTIYVSAYLGEIWRGCLESVPKAQWEGAEC 122 Query: 122 LGFNRFEQLTKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTFQ 181 L +R +++ KVILPQAV+IATPPTVGF VQIVKNTSLASV+GFV+L+RAGQ+INNS F+ Sbjct: 123 LALSRTQRMFKVILPQAVRIATPPTVGFSVQIVKNTSLASVVGFVELTRAGQLINNSIFE 182 Query: 182 PFTVFGCVALIYFCLCFPLSALSKHFE 208 PF ++ VA +YFCLCFPLSA S+ E Sbjct: 183 PFLIYLIVAALYFCLCFPLSAFSQRLE 209 >ref|YP_001526198.1| amino acid ABC transporter permease [Azorhizobium caulinodans ORS 571] dbj|BAF89280.1| amino acid ABC transporter permease protein [Azorhizobium caulinodans ORS 571] Length = 217 Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 135/217 (62%), Positives = 177/217 (81%), Gaps = 1/217 (0%) Query: 1 MNAFSFLHVEYLLQAAVWTVVLSLVAFVFGGVAGFVIALWRVSPNAVLRGIASGYIQVVQ 60 M F+ H E+L AA+WTV LS +AFV GG+ GF++AL RVSP+ V+RGIA GYIQ+VQ Sbjct: 1 MPTFTLTHFEFLCWAALWTVGLSAIAFVGGGIVGFLVALARVSPSPVVRGIAIGYIQIVQ 60 Query: 61 GIPLLVILFVAYFGLAIAGFKLTP-LVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEAS 119 G PLL++LF+ YFG+AI GFK P +++AG+ IY + FL EIWRGCI++VPKTQWEA+ Sbjct: 61 GTPLLILLFLFYFGIAIVGFKEVPAILSAGLGLTIYASGFLAEIWRGCIESVPKTQWEAA 120 Query: 120 ECLGFNRFEQLTKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNST 179 ECL +R++++TKV+LPQA++IAT PTVGF+VQIVKNTSLASV+GF++LS+AG+++NNS Sbjct: 121 ECLSLSRWQRMTKVVLPQAMRIATAPTVGFLVQIVKNTSLASVVGFIELSQAGKLVNNSI 180 Query: 180 FQPFTVFGCVALIYFCLCFPLSALSKHFERKLNVSHR 216 F+PFT+F VA IYF LC+PLS S+ ERKLNV R Sbjct: 181 FEPFTIFIVVASIYFVLCYPLSTWSRSLERKLNVGRR 217 >ref|YP_841321.1| ABC transporter permease [Ralstonia eutropha H16] emb|CAJ96591.1| ABC-type transporter, permease component: PAAT family [Ralstonia eutropha H16] Length = 216 Score = 270 bits (689), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 125/215 (58%), Positives = 174/215 (80%) Query: 1 MNAFSFLHVEYLLQAAVWTVVLSLVAFVFGGVAGFVIALWRVSPNAVLRGIASGYIQVVQ 60 + FS+ H+E LL AA WT+ ++L+AFV G +AGF++AL R S + +LR ++ YIQVVQ Sbjct: 2 ITEFSWNHLEILLLAARWTLWVTLLAFVGGTLAGFLVALARTSRSPMLRLASTAYIQVVQ 61 Query: 61 GIPLLVILFVAYFGLAIAGFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASE 120 G P+L++LF++Y+GL++ G KL+P+VAA ++ +IY +A+LGEIWRGCI+AVP+ QWEASE Sbjct: 62 GTPVLIVLFLSYYGLSVLGLKLSPMVAAMLAMSIYASAYLGEIWRGCIEAVPQGQWEASE 121 Query: 121 CLGFNRFEQLTKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTF 180 L R++QL V+LPQAV++A PPTVGF VQ+VKNTS+ S+IG ++L+RAGQ+INN+TF Sbjct: 122 ALALTRWQQLRYVVLPQAVRLALPPTVGFSVQLVKNTSITSIIGVIELTRAGQLINNATF 181 Query: 181 QPFTVFGCVALIYFCLCFPLSALSKHFERKLNVSH 215 QPF VF VALIYF LCFPLSA ++ ER+L+V+ Sbjct: 182 QPFAVFVVVALIYFALCFPLSAAARRMERRLHVNR 216 >ref|YP_003693666.1| polar amino acid ABC transporter inner membrane subunit [Starkeya novella DSM 506] gb|ADH89047.1| polar amino acid ABC transporter, inner membrane subunit [Starkeya novella DSM 506] Length = 220 Score = 269 bits (687), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 122/208 (58%), Positives = 169/208 (81%) Query: 2 NAFSFLHVEYLLQAAVWTVVLSLVAFVFGGVAGFVIALWRVSPNAVLRGIASGYIQVVQG 61 A + H+ +L A+WT+ LS++A V GG+AGF++AL RVSP+ +R +A+ Y+Q++QG Sbjct: 3 GALNVNHLLFLGHGALWTIGLSVIALVGGGLAGFLVALGRVSPSRTVRLLAATYVQLIQG 62 Query: 62 IPLLVILFVAYFGLAIAGFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASEC 121 PLLVI+F+++FGLA GF ++PL AAG S I+ AA+LGEIWRGCI+AVP+ QWEA+E Sbjct: 63 TPLLVIMFLSFFGLAAIGFNISPLAAAGASMTIFVAAYLGEIWRGCIEAVPRPQWEAAEG 122 Query: 122 LGFNRFEQLTKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTFQ 181 L +R +++ KVILPQA++IATPPTVGFMVQI+KNTSLASV+GFV+L+R+GQIINNS F+ Sbjct: 123 LALSRSQRMVKVILPQAIRIATPPTVGFMVQIIKNTSLASVVGFVELTRSGQIINNSMFE 182 Query: 182 PFTVFGCVALIYFCLCFPLSALSKHFER 209 PF ++ +A++YF LC+PLS LS+ ER Sbjct: 183 PFLIYSIIAVVYFSLCYPLSRLSRRLER 210 >ref|ZP_08528169.1| ABC transporter, membrane spanning protein (amino acid) [Agrobacterium sp. ATCC 31749] gb|EGL65032.1| ABC transporter, membrane spanning protein (amino acid) [Agrobacterium sp. ATCC 31749] Length = 219 Score = 263 bits (673), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 124/212 (58%), Positives = 165/212 (77%) Query: 1 MNAFSFLHVEYLLQAAVWTVVLSLVAFVFGGVAGFVIALWRVSPNAVLRGIASGYIQVVQ 60 + F + +LL A WTV+L+++A + GG+ GF+IAL R S N +LR A YIQV+Q Sbjct: 3 LRTFGWNEFGFLLTALQWTVLLTIIALIGGGIVGFLIALARTSDNKLLRIAAGTYIQVIQ 62 Query: 61 GIPLLVILFVAYFGLAIAGFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASE 120 GIP+L+ILF++Y+GL++AG +L PL+AAG S IY + +L EIWRGCIQAVPK QWEASE Sbjct: 63 GIPVLMILFLSYYGLSLAGLELPPLIAAGASMTIYTSGYLAEIWRGCIQAVPKQQWEASE 122 Query: 121 CLGFNRFEQLTKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTF 180 L R +Q VILPQA++I+ PPTVGF VQ+VKNTS+AS+IGFV+L+RAGQ+INN+TF Sbjct: 123 SLALTRAQQYRYVILPQAIRISLPPTVGFAVQVVKNTSIASIIGFVELARAGQLINNATF 182 Query: 181 QPFTVFGCVALIYFCLCFPLSALSKHFERKLN 212 QPF VF VA++YF +C+PLS LS+ ER+L+ Sbjct: 183 QPFRVFVAVAVLYFIVCYPLSQLSRLLERRLH 214 >ref|YP_918681.1| polar amino acid ABC transporter, inner membrane subunit [Paracoccus denitrificans PD1222] gb|ABL72985.1| amino acid ABC transporter membrane protein 2, PAAT family [Paracoccus denitrificans PD1222] Length = 214 Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 126/209 (60%), Positives = 160/209 (76%) Query: 8 HVEYLLQAAVWTVVLSLVAFVFGGVAGFVIALWRVSPNAVLRGIASGYIQVVQGIPLLVI 67 ++ LL AAVWT LSL+AFV GG G +IA+ RVS N VLRGIA YIQ+VQG PLLV+ Sbjct: 6 QMQALLTAAVWTAGLSLIAFVLGGAVGLLIAVMRVSANRVLRGIAFTYIQIVQGTPLLVM 65 Query: 68 LFVAYFGLAIAGFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASECLGFNRF 127 + +A+FGL+I GF LTP AA + IY +A+ GEIWRG I AVPKTQWEA+ECL + Sbjct: 66 MMLAFFGLSILGFDLTPFAAASFAMVIYSSAYFGEIWRGGILAVPKTQWEAAECLALHPV 125 Query: 128 EQLTKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTFQPFTVFG 187 ++ VI+PQ ++I+TPPTVGFMVQIVKNTSLASVIG +L+ ++INNSTFQPF +F Sbjct: 126 QRFWLVIIPQGLRISTPPTVGFMVQIVKNTSLASVIGVAELTYTSKLINNSTFQPFIIFS 185 Query: 188 CVALIYFCLCFPLSALSKHFERKLNVSHR 216 VA++YFC+C+PL+ S+ E KLNV+HR Sbjct: 186 VVAVLYFCMCYPLAWWSRKLEDKLNVAHR 214 >ref|YP_001525533.1| amino acid ABC transporter permease [Azorhizobium caulinodans ORS 571] dbj|BAF88615.1| amino acid ABC transporter, permease protein [Azorhizobium caulinodans ORS 571] Length = 219 Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 127/207 (61%), Positives = 161/207 (77%), Gaps = 2/207 (0%) Query: 11 YLLQAAVWTVVLSLVAFVFGGVAGFVIALWRVSPNAVLRGIASGYIQVVQGIPLLVILFV 70 +LL++ WT+VL+ +A GG+AG IAL RVSP LR + YIQ++QG P+L+ILF+ Sbjct: 13 FLLESLRWTLVLTAIALTLGGIAGLFIALARVSPLMPLRLATAAYIQIIQGSPVLMILFL 72 Query: 71 AYFGLAIAGFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASECLGFNRFEQL 130 +Y+GL++ GF+L LVAA IS +IY + +LG+IWRGCI+AVPK QWEASECLG R +Q Sbjct: 73 SYYGLSLIGFQLPALVAASISMSIYVSGYLGDIWRGCIEAVPKPQWEASECLGMTRVQQF 132 Query: 131 TKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTFQPFTVFGCVA 190 +ILPQA++IA PPT GF VQ+VKNTS+ S+IGFV+LSRAGQ+INNSTFQPF VF VA Sbjct: 133 RHIILPQALRIALPPTTGFAVQVVKNTSITSIIGFVELSRAGQLINNSTFQPFRVFLTVA 192 Query: 191 LIYFCLCFPLSALSKHFERKLNV--SH 215 IYF +C+PLS LS ERKLNV SH Sbjct: 193 AIYFVICYPLSRLSGWLERKLNVGSSH 219 >ref|NP_355976.1| ABC transporter, membrane spanning protein (amino acid) [Agrobacterium tumefaciens str. C58] gb|AAK88761.1| ABC transporter, membrane spanning protein (amino acid) [Agrobacterium tumefaciens str. C58] Length = 219 Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 125/212 (58%), Positives = 164/212 (77%) Query: 1 MNAFSFLHVEYLLQAAVWTVVLSLVAFVFGGVAGFVIALWRVSPNAVLRGIASGYIQVVQ 60 + F + +LL A WTV+L+++A V GG+ GF IAL R S N +LR A YIQV+Q Sbjct: 3 LRTFGWNEFGFLLTALQWTVLLTIIALVGGGIVGFFIALARTSDNKLLRIAAGTYIQVIQ 62 Query: 61 GIPLLVILFVAYFGLAIAGFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASE 120 GIP+L+ILF++Y+GL++AG +L PL+AAG S IY + +L EIWRGCIQAVPK QWEASE Sbjct: 63 GIPVLMILFLSYYGLSLAGLELPPLIAAGASMTIYTSGYLAEIWRGCIQAVPKQQWEASE 122 Query: 121 CLGFNRFEQLTKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTF 180 L R +Q VILPQA++I+ PPTVGF VQ+VKNTS+AS+IGFV+L+RAGQ+INN+TF Sbjct: 123 SLALTRAQQYRYVILPQAIRISLPPTVGFAVQVVKNTSIASIIGFVELARAGQLINNATF 182 Query: 181 QPFTVFGCVALIYFCLCFPLSALSKHFERKLN 212 QPF VF VA++YF +C+PLS LS+ ER+L+ Sbjct: 183 QPFRVFVAVAVLYFIVCYPLSQLSRWLERRLH 214