BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0046.p (227 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777258.1| amino acid ABC transporter permease [Herbasp... 454 e-126 ref|YP_001415090.1| polar amino acid ABC transporter inner membr... 292 3e-77 ref|YP_001526199.1| amino acid ABC transporter permease [Azorhiz... 291 3e-77 ref|YP_522305.1| amino acid ABC transporter permease [Rhodoferax... 275 5e-72 ref|YP_001769970.1| polar amino acid ABC transporter inner membr... 273 1e-71 gb|EGP48468.1| amino acid ABC transporter permease [Achromobacte... 271 7e-71 gb|EFV84587.1| polar amino acid ABC transporter [Achromobacter x... 270 1e-70 ref|YP_002541294.1| amino acid ABC transporter [Agrobacterium ra... 267 1e-69 ref|ZP_04681592.1| amino acid ABC transporter, permease protein,... 265 5e-69 ref|YP_982304.1| polar amino acid ABC transporter inner membrane... 262 3e-68 >ref|YP_003777258.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65350.1| ABC-type amino acid transport system, permease protein [Herbaspirillum seropedicae SmR1] Length = 227 Score = 454 bits (1167), Expect = e-126, Method: Compositional matrix adjust. Identities = 227/227 (100%), Positives = 227/227 (100%) Query: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY Sbjct: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 Query: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ Sbjct: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 Query: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV Sbjct: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 Query: 181 QSETFRSFEVYAVIAVAYLVLSFLFRGAFWAISQIAFVRKRKLGTNL 227 QSETFRSFEVYAVIAVAYLVLSFLFRGAFWAISQIAFVRKRKLGTNL Sbjct: 181 QSETFRSFEVYAVIAVAYLVLSFLFRGAFWAISQIAFVRKRKLGTNL 227 >ref|YP_001415090.1| polar amino acid ABC transporter inner membrane subunit [Xanthobacter autotrophicus Py2] gb|ABS65433.1| polar amino acid ABC transporter, inner membrane subunit [Xanthobacter autotrophicus Py2] Length = 227 Score = 292 bits (747), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 140/227 (61%), Positives = 174/227 (76%) Query: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 M Y FDF ++ W MG WLT+QLS ++ VLGF +GTLCAI V+ LV Y Sbjct: 1 MTYQFDFAALLPYWREFAMGVWLTLQLSFVATVLGFVLGTLCAIGRSDGAPWVKALVACY 60 Query: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 VE+IRNTPLLVQ+F+++FG+A++G + A AAV+AL VNVGAYT+EI+RAG+ SIH Q Sbjct: 61 VEVIRNTPLLVQIFIIYFGIATLGLHVDANVAAVLALVVNVGAYTSEIVRAGLESIHKSQ 120 Query: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 +EAAECLG+SR YWHV++ PA+ERVYP+LTSQ++LLMLASSITSQISAEELTA AN + Sbjct: 121 LEAAECLGLSRPQTYWHVIVRPAIERVYPALTSQYVLLMLASSITSQISAEELTAVANRI 180 Query: 181 QSETFRSFEVYAVIAVAYLVLSFLFRGAFWAISQIAFVRKRKLGTNL 227 QS+TFRSFE Y V+ V YL LSF+ R AFW + FVR+RKLGT L Sbjct: 181 QSDTFRSFETYIVVGVLYLALSFVVRIAFWLFGLVVFVRRRKLGTAL 227 >ref|YP_001526199.1| amino acid ABC transporter permease [Azorhizobium caulinodans ORS 571] dbj|BAF89281.1| amino acid ABC transporter permease protein [Azorhizobium caulinodans ORS 571] Length = 227 Score = 291 bits (746), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 145/227 (63%), Positives = 174/227 (76%) Query: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 M Y FDF + W MG WLT+QLS +S VLGF +GTLCAI V+ LV Y Sbjct: 1 MTYQFDFAVLLPFWREFAMGVWLTLQLSLISTVLGFILGTLCAIGRADGPPWVKFLVATY 60 Query: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 VEIIRNTPLLVQVF+V+FG+A++G +SA AAV+AL VNVGAYT+EI+RAG+ SIH Q Sbjct: 61 VEIIRNTPLLVQVFIVYFGIATLGIHVSANLAAVLALVVNVGAYTSEIVRAGLESIHKSQ 120 Query: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 +EAAECLG+SR YWHV++ PA+ERVYP+LTSQ++LLMLASSITSQISAEELTA AN + Sbjct: 121 LEAAECLGLSRPQTYWHVIVRPAIERVYPALTSQYVLLMLASSITSQISAEELTAVANRI 180 Query: 181 QSETFRSFEVYAVIAVAYLVLSFLFRGAFWAISQIAFVRKRKLGTNL 227 QS+TFRSFE Y V+ V YL LSF+ R AFW + FVR+RKLGT L Sbjct: 181 QSDTFRSFETYIVVGVLYLALSFVVRLAFWLFGLVVFVRRRKLGTAL 227 >ref|YP_522305.1| amino acid ABC transporter permease [Rhodoferax ferrireducens T118] gb|ABD68774.1| Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine [Rhodoferax ferrireducens T118] Length = 227 Score = 275 bits (702), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 136/226 (60%), Positives = 168/226 (74%) Query: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 M Y F+F V A W RLL G T +LSA IV GF +GTL AI +L ++ G+V Y Sbjct: 1 MTYVFEFSDVLAAWPRLLSGLKYTAELSAAGIVFGFVLGTLSAIVRHQKLPVLNGIVSVY 60 Query: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 VE IRNTP LVQ FLVFFGL+++G +LSAE A +ALT+N GAYT EIMRAG+++ H GQ Sbjct: 61 VEAIRNTPFLVQAFLVFFGLSTLGIRLSAEFCAALALTLNAGAYTCEIMRAGLDATHKGQ 120 Query: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 IEAAE LGM +YWHV+LLPA+E+VYP+LTSQF+LLML++SITSQISAEELT AN+V Sbjct: 121 IEAAESLGMGWPAIYWHVMLLPAIEKVYPALTSQFVLLMLSTSITSQISAEELTGVANIV 180 Query: 181 QSETFRSFEVYAVIAVAYLVLSFLFRGAFWAISQIAFVRKRKLGTN 226 QSETFRSFEVY ++ YL LSF+FR FW + ++ F R LG + Sbjct: 181 QSETFRSFEVYLLVGAIYLALSFVFRMIFWVVGKLCFTSTRVLGPS 226 >ref|YP_001769970.1| polar amino acid ABC transporter inner membrane subunit [Methylobacterium sp. 4-46] gb|ACA17536.1| polar amino acid ABC transporter, inner membrane subunit [Methylobacterium sp. 4-46] Length = 227 Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 135/227 (59%), Positives = 174/227 (76%) Query: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 M+ DF +V W L GA LT++LS ++ +G A+G + AI +SR A +R L Y Sbjct: 1 MSLDLDFGAVLERWPSFLDGALLTLELSGIATAVGGALGGITAIGRRSRHAALRRLCEVY 60 Query: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 VE IRNTPLLVQ+FLV+FGLAS+G++ SA T A +ALT+NVGAYTTEI+RAG+++I GQ Sbjct: 61 VEAIRNTPLLVQIFLVYFGLASLGFRFSALTVAALALTINVGAYTTEIVRAGLDAIPRGQ 120 Query: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 IEAAE L +SR +Y HVVLLPA+ERVYPSLTSQF+LLMLASS+TSQISAEELTA AN + Sbjct: 121 IEAAEGLALSRAQIYRHVVLLPAIERVYPSLTSQFVLLMLASSVTSQISAEELTAVANYI 180 Query: 181 QSETFRSFEVYAVIAVAYLVLSFLFRGAFWAISQIAFVRKRKLGTNL 227 QS+T+R+FE Y V+A+ Y+ LSF+ R FW + + F R+R+LGT L Sbjct: 181 QSDTYRAFETYIVVALIYVALSFIMRAGFWGLGLVLFPRRRRLGTPL 227 >gb|EGP48468.1| amino acid ABC transporter permease [Achromobacter xylosoxidans AXX-A] Length = 227 Score = 271 bits (692), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 133/227 (58%), Positives = 166/227 (73%) Query: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 MNYTFDF SV W L GAW+T++LS + VLGF +GTLCA+A SRL +R L Y Sbjct: 1 MNYTFDFASVLEQWPLLAQGAWVTVKLSFCATVLGFILGTLCALARNSRLGWLRALAGGY 60 Query: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 VE+IRNTPLL+Q + + FGL+S G + AV+AL +N+GAYT EI+RAGI SI Q Sbjct: 61 VELIRNTPLLIQAYFLIFGLSSAGLTMPIMAGAVLALVINIGAYTCEIVRAGIESIPKDQ 120 Query: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 +EA ECL +SR V+WHVVL PAVERVYPSLTSQF+LLMLASSI S + AEEL AN + Sbjct: 121 LEAGECLALSRLQVFWHVVLRPAVERVYPSLTSQFVLLMLASSIMSAVGAEELLGVANRI 180 Query: 181 QSETFRSFEVYAVIAVAYLVLSFLFRGAFWAISQIAFVRKRKLGTNL 227 QS+T+R+FEV+ V+ YL LS+L R FW ++Q+ F R+RKLGT L Sbjct: 181 QSDTYRNFEVFIVLWGVYLALSWLMRLGFWLLAQLVFPRRRKLGTPL 227 >gb|EFV84587.1| polar amino acid ABC transporter [Achromobacter xylosoxidans C54] Length = 227 Score = 270 bits (689), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 132/227 (58%), Positives = 166/227 (73%) Query: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 MNYTFDF SV W L GAW+T++LS + VLGF +GTLCA+A SRL +R + Y Sbjct: 1 MNYTFDFASVLEQWPLLAQGAWVTVKLSFCATVLGFILGTLCALARNSRLGWLRAVAGGY 60 Query: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 VE+IRNTPLL+Q + + FGL+S G + AV+AL +N+GAYT EI+RAGI SI Q Sbjct: 61 VELIRNTPLLIQAYFLIFGLSSAGLTMPIMAGAVLALVINIGAYTCEIVRAGIESIPKDQ 120 Query: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 +EA ECL +SR V+WHVVL PAVERVYPSLTSQF+LLMLASSI S + AEEL AN + Sbjct: 121 LEAGECLALSRLQVFWHVVLRPAVERVYPSLTSQFVLLMLASSIMSAVGAEELLGVANRI 180 Query: 181 QSETFRSFEVYAVIAVAYLVLSFLFRGAFWAISQIAFVRKRKLGTNL 227 QS+T+R+FEV+ V+ YL LS+L R FW ++Q+ F R+RKLGT L Sbjct: 181 QSDTYRNFEVFIVLWGVYLALSWLMRLGFWLLAQVVFPRRRKLGTPL 227 >ref|YP_002541294.1| amino acid ABC transporter [Agrobacterium radiobacter K84] gb|ACM29697.1| amino acid ABC transporter [Agrobacterium radiobacter K84] Length = 227 Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 141/227 (62%), Positives = 175/227 (77%) Query: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 M+Y FDF S+ W +G WLT+QLS +S V+G +GTLCAI +RG++ Y Sbjct: 1 MSYQFDFASLLPYWKEFALGVWLTLQLSVISTVIGLVLGTLCAIGRADGGPWLRGIIATY 60 Query: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 VE+IRNTPLLVQVFLV+FG+A++G +SA AAV+AL VNVGAYT EI+RAG+ SIH Q Sbjct: 61 VEVIRNTPLLVQVFLVYFGIATLGVHVSANMAAVVALVVNVGAYTCEIVRAGLQSIHKAQ 120 Query: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 +EAAECLG+SR YWHV++ PA+ERVYP+LTSQ++LLMLASSITSQISAEELTA AN + Sbjct: 121 LEAAECLGLSRRQTYWHVIIRPAIERVYPALTSQYVLLMLASSITSQISAEELTAVANRI 180 Query: 181 QSETFRSFEVYAVIAVAYLVLSFLFRGAFWAISQIAFVRKRKLGTNL 227 QS+TFRSFE Y V+ V YL+LSF+ R A W + FVR+RKLGT L Sbjct: 181 QSDTFRSFETYIVVGVLYLLLSFVVRIALWLLGLGLFVRRRKLGTAL 227 >ref|ZP_04681592.1| amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family [Ochrobactrum intermedium LMG 3301] gb|EEQ92896.1| amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family [Ochrobactrum intermedium LMG 3301] Length = 225 Score = 265 bits (676), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 135/224 (60%), Positives = 162/224 (72%) Query: 4 TFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAYVEI 63 TFDF V W L+ G LT QL+ ++ V GF +GT CAIA +S ++R L AYVE Sbjct: 2 TFDFSVVLLRWHMLVDGMALTAQLALITTVTGFIIGTACAIARRSGGPVLRRLATAYVES 61 Query: 64 IRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQIEA 123 IRNTP LVQ+F+++FGL+S+G+ A AV+ALTVNVGAYT EIMRAG +SI GQ EA Sbjct: 62 IRNTPFLVQIFVIYFGLSSLGYSFGAIFVAVVALTVNVGAYTAEIMRAGFDSIQEGQWEA 121 Query: 124 AECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLVQSE 183 ECLG+S +YWHV L PA+ERVYP+LTSQFILLMLASS+TSQISAEELTA N +QSE Sbjct: 122 GECLGLSSTQLYWHVGLRPAMERVYPALTSQFILLMLASSVTSQISAEELTAAGNFIQSE 181 Query: 184 TFRSFEVYAVIAVAYLVLSFLFRGAFWAISQIAFVRKRKLGTNL 227 T+R FE Y VIAV YL LS R FW + F R+R+LGT L Sbjct: 182 TYRPFETYLVIAVIYLFLSLGMRALFWGLGMALFPRRRRLGTPL 225 >ref|YP_982304.1| polar amino acid ABC transporter inner membrane subunit [Polaromonas naphthalenivorans CJ2] gb|ABM37383.1| amino acid ABC transporter membrane protein 1, PAAT family [Polaromonas naphthalenivorans CJ2] Length = 227 Score = 262 bits (670), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 131/227 (57%), Positives = 169/227 (74%) Query: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 M+Y+ DF + A W LL GAW T+ LS + V GF +G CA+ + + AY Sbjct: 1 MHYSLDFSAPLAYWPELLAGAWTTLALSLSATVFGFLLGVFCALTKTGHSVWLARVASAY 60 Query: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 VE+IRNTPLLVQ+F+V+FGL+S+G ++ A TAA IAL VNVGAYT+EI+RAGI+SI GQ Sbjct: 61 VELIRNTPLLVQIFIVYFGLSSLGLQVGAFTAATIALVVNVGAYTSEIVRAGIDSIPRGQ 120 Query: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 +EAAEC+ +SR+ HVVL PA+ERVYP+LTSQ++LLMLASSI SQISAEELTA AN + Sbjct: 121 MEAAECMALSRWQTLRHVVLPPAIERVYPALTSQYVLLMLASSICSQISAEELTAVANRI 180 Query: 181 QSETFRSFEVYAVIAVAYLVLSFLFRGAFWAISQIAFVRKRKLGTNL 227 QS+TFRS E Y ++A AYL++S + R FW I+ +AF R R+LGT L Sbjct: 181 QSDTFRSVETYLIVAGAYLLMSLVMRAIFWLIAMVAFPRLRRLGTPL 227