BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0038.p (269 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777251.1| AraC family transcription regulator protein ... 540 e-151 ref|YP_001858065.1| AraC family transcriptional regulator [Burkh... 190 2e-46 ref|YP_001971872.1| putative AraC family transcriptional regulat... 189 3e-46 ref|YP_002028053.1| AraC family transcriptional regulator [Steno... 189 4e-46 ref|YP_572107.1| AraC family transcriptional regulator [Chromoha... 184 9e-45 ref|YP_001631793.1| AraC family transcriptional regulator [Borde... 184 1e-44 ref|YP_004234506.1| AraC family transcriptional regulator [Acido... 182 6e-44 ref|YP_785630.1| AraC family transcriptional regulator [Bordetel... 179 5e-43 ref|YP_002006688.1| AraC family transcriptional regulator [Cupri... 177 2e-42 ref|ZP_02885187.1| transcriptional regulator, AraC family [Burkh... 177 2e-42 >ref|YP_003777251.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65343.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 280 Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust. Identities = 265/269 (98%), Positives = 265/269 (98%) Query: 1 MPALQHFWRDPALPFLEGRRATGSLSCYAPHTHDSFSIGIVDAGHSIFALAEHSQPIAPG 60 MPALQHFWRDPALPFLEGRRATGSLSCYAPHTHDSFSIGIVDAGHSIFALAEHSQPIAPG Sbjct: 12 MPALQHFWRDPALPFLEGRRATGSLSCYAPHTHDSFSIGIVDAGHSIFALAEHSQPIAPG 71 Query: 61 DVVLVRAGDVHCCNPADLQCWSYRMFHIEHAWLRALLAETPATRGLPERMRSQVLRSPQA 120 DVVLVRAGDVHCCNPADLQCWSYRMFHIEH WL LLAETPATRGLPERMRSQVLRSPQA Sbjct: 72 DVVLVRAGDVHCCNPADLQCWSYRMFHIEHGWLSTLLAETPATRGLPERMRSQVLRSPQA 131 Query: 121 VQLLDRMTLALDHDASERVAEVITCLQEIMLLCAEACAHDAAPLTEDAHRLGRAYAHLQQ 180 VQLLDRMTLALDHDASERVAEVITCLQEIMLLCAEACAHDAAPLTEDAH LGRAYAHLQQ Sbjct: 132 VQLLDRMTLALDHDASERVAEVITCLQEIMLLCAEACAHDAAPLTEDAHGLGRAYAHLQQ 191 Query: 181 HCRRSVSLDELAEVAGMGRYQLIRQFRRRYGMTPHALQLDMKIRQARTLLQQGASAADAA 240 HCRRSVSLDELAEVAGMGRYQLIRQFRRRYGMTPHALQLDMKIRQARTLLQQGASAADAA Sbjct: 192 HCRRSVSLDELAEVAGMGRYQLIRQFRRRYGMTPHALQLDMKIRQARTLLQQGASAADAA 251 Query: 241 YDTGFADQSHFHRAFKSRVAATPLQYTRR 269 YDTGFADQSHFHRAFKSRVAATPLQYTRR Sbjct: 252 YDTGFADQSHFHRAFKSRVAATPLQYTRR 280 >ref|YP_001858065.1| AraC family transcriptional regulator [Burkholderia phymatum STM815] gb|ACC71019.1| transcriptional regulator, AraC family [Burkholderia phymatum STM815] Length = 271 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 111/268 (41%), Positives = 150/268 (55%), Gaps = 8/268 (2%) Query: 5 QHFWRDPALPFLEGRRATGSLSCYAPHTHDSFSIGIVDAGHSIFALAEHSQPIAPGDVVL 64 Q +WRDP LPF+E R A GS +CY PHTHD+ SIG VD+GHS + + + PG +VL Sbjct: 4 QCYWRDPQLPFVESRLAFGSRACYVPHTHDTLSIGAVDSGHSHYVCGDDRARLGPGSLVL 63 Query: 65 VRAGDVHCCNPADLQCWSYRMFHIEHAWLRALLAETPATRGLPERMRSQVLRSPQAVQ-- 122 + A VH CNP WSY+M H++ AW A+L E+ R + R A Q Sbjct: 64 IPATRVHACNPDTDSAWSYQMLHLDVAWASAVLRESGTANADDVLARPSINRDRDAYQRY 123 Query: 123 -LLDRMTLALDHDASERVAEVITCLQEIMLLCAEACAHDAAPLTEDA-HRLGRAYAHLQQ 180 L+R+ + + D++E+ A +I + L A + P+ A RL R L Sbjct: 124 CALNRLLFS-NADSAEKEAALILFVGGRSWLGE---ARNVPPVPRVAVDRLRRIMDLLHD 179 Query: 181 HCRRSVSLDELAEVAGMGRYQLIRQFRRRYGMTPHALQLDMKIRQARTLLQQGASAADAA 240 + +++LA++AGM RY IR FR GM PHA QLD++I AR LL+ G + A Sbjct: 180 AYDERLPIEQLAQMAGMSRYAFIRAFRAATGMAPHAYQLDLRINAARRLLRDGCALTAVA 239 Query: 241 YDTGFADQSHFHRAFKSRVAATPLQYTR 268 +D GFADQ+HF RAFK RVA TP Y R Sbjct: 240 HDLGFADQAHFQRAFKERVAMTPGAYRR 267 >ref|YP_001971872.1| putative AraC family transcriptional regulator [Stenotrophomonas maltophilia K279a] emb|CAQ45570.1| putative AraC-family transcriptional regulator [Stenotrophomonas maltophilia K279a] Length = 271 Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 118/276 (42%), Positives = 158/276 (57%), Gaps = 13/276 (4%) Query: 1 MPALQHFWRDPALPFLEGRRATGSLSCYAPHTHDSFSIGIVDAGHSIF-ALAEHSQPIAP 59 M + FWRDP +PF+E RRA S +C+ PH+HD+FSIG VDAG S+F A+ + + P Sbjct: 1 MRSATEFWRDPRMPFVESRRACDSRACHRPHSHDTFSIGAVDAGSSVFTGAAKGPRLLQP 60 Query: 60 GDVVLVRAGDVHCCNPADLQCWSYRMFHIEHAWLRALLAE-----TPATRGLPERMRSQV 114 G +V V AG VH CNP Q WSY+M H++ W+ + AE P + P R+ + Sbjct: 61 GSLVGVPAGRVHACNPLPGQLWSYQMLHLDPRWMAEVRAEYDDLPEPDWQQEPIRISNHR 120 Query: 115 LRSPQAVQLLDRMTLALDHDASERVAEVITCLQEIMLLCAEACAHDAAPLTEDA--HRLG 172 R Q QL + TL D S + A +I + ++ A A PL + A RL Sbjct: 121 PRYQQYCQLNE--TLFSDDPVSVKEAALIAFVGDLDEHDGVAVA---GPLEDAALQQRLQ 175 Query: 173 RAYAHLQQHCRRSVSLDELAEVAGMGRYQLIRQFRRRYGMTPHALQLDMKIRQARTLLQQ 232 L+Q + +L ELA +AGM RYQLIR FRR G+TPHA Q+D +I++AR L + Sbjct: 176 PVMDVLRQRLEHTPALQELASLAGMSRYQLIRAFRRATGLTPHAWQIDQRIQEARRRLCE 235 Query: 233 GASAADAAYDTGFADQSHFHRAFKSRVAATPLQYTR 268 G + A A+ GFADQSHF R FK+ ATP QY R Sbjct: 236 GQALAVVAHALGFADQSHFQRVFKAHAGATPGQYRR 271 >ref|YP_002028053.1| AraC family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gb|ACF51370.1| transcriptional regulator, AraC family [Stenotrophomonas maltophilia R551-3] Length = 271 Score = 189 bits (480), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 118/280 (42%), Positives = 159/280 (56%), Gaps = 21/280 (7%) Query: 1 MPALQHFWRDPALPFLEGRRATGSLSCYAPHTHDSFSIGIVDAGHSIF-ALAEHSQPIAP 59 M + FWRDP +PF+E RRA S +C+ PH+HD+FSIG VDAG+S+F AE + + P Sbjct: 1 MRSATEFWRDPRMPFVESRRACDSRACHRPHSHDTFSIGAVDAGNSVFTGAAEGPRLLQP 60 Query: 60 GDVVLVRAGDVHCCNPADLQCWSYRMFHIEHAWLRALLAE-----TPATRGLPERMRSQV 114 G++V V AG VH CNP Q WSY+M H++ W+ + AE P + P R+ Sbjct: 61 GNLVGVPAGRVHACNPLPGQVWSYQMLHLDARWMAEVRAEYDGLPGPDWQQEPIRISHHR 120 Query: 115 LRSPQAVQLLDRMTLALDHDASERVAEVITCLQEIMLLCAEACAHDAAPLT---EDA--- 168 R Q QL + TL D S + A +I + ++ HD + EDA Sbjct: 121 PRYQQYCQLNE--TLFSDDPVSVKEAALIAFVGDLD-------EHDGVAVAGPPEDAALQ 171 Query: 169 HRLGRAYAHLQQHCRRSVSLDELAEVAGMGRYQLIRQFRRRYGMTPHALQLDMKIRQART 228 R+ L+Q + +L ELA +AGM RYQLIR FRR G+TPHA Q+D +I++AR Sbjct: 172 QRVQPVMDLLRQRLEHTPALQELASLAGMSRYQLIRAFRRATGLTPHAWQIDQRIQEARR 231 Query: 229 LLQQGASAADAAYDTGFADQSHFHRAFKSRVAATPLQYTR 268 L +G + A A+ GFADQSHF R FK+ ATP QY R Sbjct: 232 RLCEGQALAVVAHALGFADQSHFQRVFKAHAGATPGQYRR 271 >ref|YP_572107.1| AraC family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gb|ABE57408.1| transcriptional regulator, AraC family [Chromohalobacter salexigens DSM 3043] Length = 266 Score = 184 bits (468), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 117/269 (43%), Positives = 152/269 (56%), Gaps = 12/269 (4%) Query: 4 LQHFWRDPALPFLEGRRATGSLSCYAPHTHDSFSIGIVDAGHSIFALAEHSQPIAPGDVV 63 + FWRDP LPF+E RRAT S +CY PH+H + SIG+VD G S F + + PG +V Sbjct: 1 MTQFWRDPTLPFVESRRATDSRACYRPHSHPTLSIGVVDRGQSQFQCQRRREWLTPGCLV 60 Query: 64 LVRAGDVHCCNPADLQCWSYRMFHIEHAWLRALL----AETPATRGLPERMRSQVLRSPQ 119 V AG VH CNP Q WSY+M ++E AW+ +L AET A LP + + R Sbjct: 61 SVPAGVVHDCNPLPDQPWSYQMLYLEPAWVSEVLDEASAETDAAPTLPSTVF--IARDVA 118 Query: 120 AVQLLDRMTLALDHDA--SERVAEVITCLQEIMLLCAEACAHDAAPLTEDAHRLGRAYAH 177 Q R+ L A +++ A +I L + +A A P + D L R H Sbjct: 119 PYQAFCRLNALLFSSAPRADKEAGLIEFLGSRLWCHGDAMAVH-WPNSSDLDDLQR---H 174 Query: 178 LQQHCRRSVSLDELAEVAGMGRYQLIRQFRRRYGMTPHALQLDMKIRQARTLLQQGASAA 237 L + R SL+ LA G+ RYQ+IR FRR G+TPHA LD +I+QAR L QG A Sbjct: 175 LLECLERPPSLEVLARDHGLSRYQVIRLFRRETGLTPHAWLLDRRIQQARRRLCQGVELA 234 Query: 238 DAAYDTGFADQSHFHRAFKSRVAATPLQY 266 + A + GFADQ HF RAFK+RVAATP +Y Sbjct: 235 ELAQELGFADQGHFQRAFKARVAATPGRY 263 >ref|YP_001631793.1| AraC family transcriptional regulator [Bordetella petrii DSM 12804] emb|CAP43525.1| transcriptional regulator, AraC family [Bordetella petrii] Length = 267 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 115/262 (43%), Positives = 145/262 (55%), Gaps = 3/262 (1%) Query: 7 FWRDPALPFLEGRRATGSLSCYAPHTHDSFSIGIVDAGHSIFALAEHSQPIAPGDVVLVR 66 FWRD LP+ E RRA S +CY HTHD+ SIG VDAG S+F + + PG +V+V Sbjct: 6 FWRDARLPYAESRRAVHSRACYVSHTHDTVSIGAVDAGGSVFCSGGQRRRLRPGSLVMVP 65 Query: 67 AGDVHCCNPADLQCWSYRMFHIEHAWLRALLAETPATRGLPERMRSQVLRSPQAVQLLDR 126 A H CNP WSY+M H++ W LL ET + GLPE ++ + +P A + Sbjct: 66 AHCAHACNPDADAAWSYQMLHLDAGWTAELLRETAPSAGLPE--QACISAAPSAYHRFCQ 123 Query: 127 MTLALDHDASERVAEVITCLQEIMLLCAEACAHDAAPLTEDAHRLGRAYAHLQQHCRRSV 186 + L DA+ E L AAP A RL A L++ +++ Sbjct: 124 LNALLFSDAAPADKEAALVLYIGGRSWLGRPPRTAAPRLPAA-RLQHILAVLREPGSQAL 182 Query: 187 SLDELAEVAGMGRYQLIRQFRRRYGMTPHALQLDMKIRQARTLLQQGASAADAAYDTGFA 246 L +LA AGM RYQ IR R+ GMTPHA QLD++I QAR LL+ G S + A D GFA Sbjct: 183 PLADLAARAGMSRYQFIRACRQATGMTPHAYQLDLRIVQARRLLRAGHSLSRIAQDLGFA 242 Query: 247 DQSHFHRAFKSRVAATPLQYTR 268 DQSHF RAFK RVAATP Y R Sbjct: 243 DQSHFQRAFKERVAATPGAYRR 264 >ref|YP_004234506.1| AraC family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX45939.1| transcriptional regulator, AraC family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 277 Score = 182 bits (461), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 112/267 (41%), Positives = 150/267 (56%), Gaps = 9/267 (3%) Query: 5 QHFWRDPALPFLEGRRATGSLSCYAPHTHDSFSIGIVDAGHSIFALAEHSQ-PIAPGDVV 63 + FWRDPALPF E RRA S +CY PH H +FSIG VD G S+F AE P+ G +V Sbjct: 13 EAFWRDPALPFAESRRACRSRACYRPHLHPTFSIGAVDGGRSVFTGAEGGPVPLRAGMLV 72 Query: 64 LVRAGDVHCCNPADLQCWSYRMFHIEHAWLRALLAETPATRGLPERMRS-QVLRSPQAVQ 122 V AG VH CNP WSY+M H++ WL+A+ +E A +PE +++ P Sbjct: 73 FVPAGRVHACNPVPGSAWSYQMLHLDAEWLQAVRSEAAAA--VPEGGGPVRIVDDPACHA 130 Query: 123 LLDRMTLALDHDAS--ERVAEVITCLQEIMLLCA-EACAHDAAPLTEDAHRLGRAYAHLQ 179 R+ L A+ ++ A +I + + + A A P ++ RL A L+ Sbjct: 131 RFARLNALLFSQAAPQDKEAALIEFVGDSDAMHGLRIPAPAAGPGLQE--RLRPAMERLR 188 Query: 180 QHCRRSVSLDELAEVAGMGRYQLIRQFRRRYGMTPHALQLDMKIRQARTLLQQGASAADA 239 S LDELA +AGMGRYQLIR F+ GMTPHA Q++++I AR LQ G S AD Sbjct: 189 DAPADSTPLDELARLAGMGRYQLIRAFKAATGMTPHAWQMNLRINCARARLQDGDSLADV 248 Query: 240 AYDTGFADQSHFHRAFKSRVAATPLQY 266 A+ GFADQ+HF R FK+ TP ++ Sbjct: 249 AHGLGFADQAHFQRMFKAHAGVTPGRF 275 >ref|YP_785630.1| AraC family transcriptional regulator [Bordetella avium 197N] emb|CAJ48716.1| AraC-family transcriptional regulator [Bordetella avium 197N] Length = 267 Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 106/269 (39%), Positives = 150/269 (55%), Gaps = 7/269 (2%) Query: 1 MPALQHFWRDPALPFLEGRRATGSLSCYAPHTHDSFSIGIVDAGHSIFALAEHSQPIA-- 58 M A Q FWRDP+LPF+E RRA S +CY PH H +FSIG +D G S+F A H P+A Sbjct: 1 MDATQAFWRDPSLPFVESRRACQSRACYKPHHHPTFSIGAIDGGASVFTGASHG-PVALS 59 Query: 59 PGDVVLVRAGDVHCCNPADLQCWSYRMFHIEHAWLRALLAETPATRGL-PERMRSQVLRS 117 PG ++ V A VH CNPA WSY+M H++ AWL+A+ E + P R+ ++ Sbjct: 60 PGSLIFVPASRVHSCNPAPDTAWSYQMLHLDAAWLQAVRQEYVRSEATEPVRIVTEPRDY 119 Query: 118 PQAVQLLDRMTLALDHDASERVAEVITCLQEIMLLCAEACAHDAAPLTEDAHRLGRAYAH 177 + QL L D + A +I + + + + P + A ++ A H Sbjct: 120 MRFCQL--NALLFSQADRHNKEAALIEFIGDYDSAQGQRIKEASIP-SSLARQIKPALDH 176 Query: 178 LQQHCRRSVSLDELAEVAGMGRYQLIRQFRRRYGMTPHALQLDMKIRQARTLLQQGASAA 237 L+ +V+LD+LA ++ M RYQ IR FR G+TPHA QL+ ++ AR L+ G+S A Sbjct: 177 LRAWPTSAVTLDKLAALSSMSRYQTIRAFRAVTGLTPHAWQLNQRVNLARDWLRSGSSLA 236 Query: 238 DAAYDTGFADQSHFHRAFKSRVAATPLQY 266 A D GFADQ+HF R FK+ TP ++ Sbjct: 237 AVAQDLGFADQAHFQRVFKAHAGVTPGRF 265 >ref|YP_002006688.1| AraC family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] emb|CAQ70627.1| Putative transcriptional regulator, AraC family [Cupriavidus taiwanensis LMG 19424] Length = 277 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 111/268 (41%), Positives = 150/268 (55%), Gaps = 11/268 (4%) Query: 7 FWRDPALPFLEGRRATGSLSCYAPHTHDSFSIGIVDAGHSIFALAEHSQPIAPGDVVLVR 66 +W DPALPF E RRAT S + Y PHTH + S+G VD+G S FA E + + PG VV++ Sbjct: 13 WWADPALPFAESRRATQSSASYLPHTHATLSVGAVDSGASRFACGEDTAVLGPGAVVVIP 72 Query: 67 AGDVHCCNPADLQCWSYRMFHIEHAWLRALLAETPATRG--LPERMRSQVLRSPQAVQL- 123 A VH CNP WSY+M H + AW+ +L E A LP R V+ S +L Sbjct: 73 AHQVHACNPVPDGRWSYQMLHFDPAWVAGVLEEDSAAGAAWLPAR----VMASAHVYRLV 128 Query: 124 --LDRMTLALDHDASERVAEVITCLQEIMLLCAEACAHDAAPLTED-AHRLGRAYAHLQQ 180 L+R TL D+ E+ A ++ + ++ P+ + R+ + L++ Sbjct: 129 CALNR-TLFSPADSVEKEAALVAFVGDLHAAIDTGAVTRTLPVPAAVSARVAKLCKLLRE 187 Query: 181 HCRRSVSLDELAEVAGMGRYQLIRQFRRRYGMTPHALQLDMKIRQARTLLQQGASAADAA 240 + L ELA G+ RY L+R FR GMTPHA QLD++I+ R LL+QGA+ A+ A Sbjct: 188 RHAERLPLAELARACGLSRYHLVRAFRAETGMTPHAYQLDLRIQHGRRLLRQGAALAEVA 247 Query: 241 YDTGFADQSHFHRAFKSRVAATPLQYTR 268 GFADQSHF RAFK RVA TP +Y R Sbjct: 248 LALGFADQSHFQRAFKQRVAMTPRRYQR 275 >ref|ZP_02885187.1| transcriptional regulator, AraC family [Burkholderia graminis C4D1M] gb|EDT09275.1| transcriptional regulator, AraC family [Burkholderia graminis C4D1M] Length = 281 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 103/270 (38%), Positives = 147/270 (54%), Gaps = 17/270 (6%) Query: 6 HFWRDPALPFLEGRR-ATGSLSCYAPHTHDSFSIGIVDAGHSIFALAEHSQPIAPGDVVL 64 HFWR ALPF+E R G CYA H+H++FSIG V G S++ + G VVL Sbjct: 18 HFWRSEALPFIEARSIEDGREICYAKHSHETFSIGAVTGGRSVYVNRHSREWTGAGAVVL 77 Query: 65 VRAGDVHCCNPADLQCWSYRMFHIEHAWLRALLAETPATRGLPERMRSQVLRSPQAVQLL 124 + DVH CNP + WSYRM H++ AWL +L E + R SQ + + +L Sbjct: 78 MNPDDVHACNPIADERWSYRMLHVDVAWLTSLQHELGFSENHAFRAFSQTMTTD--AELF 135 Query: 125 DRMT----LALDHDAS--ERVAEVITCLQEIMLLCAEACAHDAAPLTED--AHRLGRAYA 176 D + + +D+DA + + + E+ + APL+ D + +L RA Sbjct: 136 DGLNRLHGILVDNDADLLRKQSAAVAFFTEVQQRL------NPAPLSHDDASRQLARAAE 189 Query: 177 HLQQHCRRSVSLDELAEVAGMGRYQLIRQFRRRYGMTPHALQLDMKIRQARTLLQQGASA 236 + +C RS+ L+++ E AG+ LIR F+ RYGMTPHA ++ +I+ +R L++G Sbjct: 190 FIADNCTRSLKLEDICEAAGLSASHLIRAFKERYGMTPHAYLINRRIQYSRAQLRRGRLI 249 Query: 237 ADAAYDTGFADQSHFHRAFKSRVAATPLQY 266 AD A D GFADQ+H R FK VAATP QY Sbjct: 250 ADVALDAGFADQAHLQRTFKRLVAATPGQY 279