BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0024.p (208 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777238.1| 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoqui... 427 e-118 ref|YP_004754616.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoqui... 307 7e-82 ref|ZP_08275134.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin... 259 2e-67 ref|ZP_07677730.1| ubiquinone biosynthesis protein [Ralstonia sp... 250 9e-65 ref|YP_001900654.1| hypothetical protein Rpic_3099 [Ralstonia pi... 249 1e-64 ref|ZP_00945771.1| 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquin... 247 9e-64 gb|AEG67956.1| ipr011566 ubiquinone biosynthesis and related pro... 247 1e-63 ref|YP_002006730.1| ubiquinone biosynthesis protein [Cupriavidus... 246 1e-63 ref|YP_004687012.1| 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoqui... 246 1e-63 ref|YP_002982677.1| hypothetical protein Rpic12D_2734 [Ralstonia... 246 1e-63 >ref|YP_003777238.1| 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Herbaspirillum seropedicae SmR1] sp|A2RPN0.1|COQ7_HERSE RecName: Full=2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; AltName: Full=5-demethoxyubiquinone hydroxylase; Short=DMQ hydroxylase emb|CAM32537.1| 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (ubiquinone biosynthesis) protein [Herbaspirillum seropedicae] gb|ADJ65330.1| 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (ubiquinone biosynthesis) protein [Herbaspirillum seropedicae SmR1] Length = 208 Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust. Identities = 208/208 (100%), Positives = 208/208 (100%) Query: 1 MQFVDELISDFDKALRVINGVVFESRPNPGRGLPDGVMSEAEKRHAAGLMRVNNVGEVCA 60 MQFVDELISDFDKALRVINGVVFESRPNPGRGLPDGVMSEAEKRHAAGLMRVNNVGEVCA Sbjct: 1 MQFVDELISDFDKALRVINGVVFESRPNPGRGLPDGVMSEAEKRHAAGLMRVNNVGEVCA 60 Query: 61 QALYDAQGRFAQKAEIKNAFARAGIEEEDHLAWTAERLRELGSHTSLLNPLWYGGAYVLG 120 QALYDAQGRFAQKAEIKNAFARAGIEEEDHLAWTAERLRELGSHTSLLNPLWYGGAYVLG Sbjct: 61 QALYDAQGRFAQKAEIKNAFARAGIEEEDHLAWTAERLRELGSHTSLLNPLWYGGAYVLG 120 Query: 121 SIAARLGDARNLGFVSETERQVEHHLMGHLDKLPAQDNRSRAIVDQMRIDEIEHGQAARD 180 SIAARLGDARNLGFVSETERQVEHHLMGHLDKLPAQDNRSRAIVDQMRIDEIEHGQAARD Sbjct: 121 SIAARLGDARNLGFVSETERQVEHHLMGHLDKLPAQDNRSRAIVDQMRIDEIEHGQAARD 180 Query: 181 LGAAEMPAPVKGLMKAMAKVMTTVAYRI 208 LGAAEMPAPVKGLMKAMAKVMTTVAYRI Sbjct: 181 LGAAEMPAPVKGLMKAMAKVMTTVAYRI 208 >ref|YP_004754616.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Collimonas fungivorans Ter331] gb|AEK63793.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Collimonas fungivorans Ter331] Length = 238 Score = 307 bits (786), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 149/208 (71%), Positives = 169/208 (81%) Query: 1 MQFVDELISDFDKALRVINGVVFESRPNPGRGLPDGVMSEAEKRHAAGLMRVNNVGEVCA 60 M F+D +I+DFD ALRVI G SRPNP DGV+ AE+RH+AGLMRVN+VGEVCA Sbjct: 31 MLFLDRVIADFDNALRVITGQASASRPNPALLAADGVLDAAEQRHSAGLMRVNHVGEVCA 90 Query: 61 QALYDAQGRFAQKAEIKNAFARAGIEEEDHLAWTAERLRELGSHTSLLNPLWYGGAYVLG 120 QALYDAQGRFAQ IK FA AG EEEDHLAWTAERLRELGSH SLLNPLWY G+Y LG Sbjct: 91 QALYDAQGRFAQGDPIKQQFAAAGREEEDHLAWTAERLRELGSHVSLLNPLWYAGSYALG 150 Query: 121 SIAARLGDARNLGFVSETERQVEHHLMGHLDKLPAQDNRSRAIVDQMRIDEIEHGQAARD 180 ++AARLGD R+L FVSETERQVE HL HL++LP QD +SRAIV+QMR DEI HG AAR Sbjct: 151 TLAARLGDVRSLSFVSETERQVEAHLSSHLEQLPLQDAKSRAIVEQMRDDEIAHGAAARS 210 Query: 181 LGAAEMPAPVKGLMKAMAKVMTTVAYRI 208 LGAAEMP PV+ +M+AM+KVMTTVAY + Sbjct: 211 LGAAEMPRPVQKVMQAMSKVMTTVAYYV 238 >ref|ZP_08275134.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Oxalobacteraceae bacterium IMCC9480] gb|EGF31393.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Oxalobacteraceae bacterium IMCC9480] Length = 209 Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 125/205 (60%), Positives = 153/205 (74%) Query: 4 VDELISDFDKALRVINGVVFESRPNPGRGLPDGVMSEAEKRHAAGLMRVNNVGEVCAQAL 63 D I+ FD ALR+I GV +R +P + D MSE ++RH+AGLMRVN+VGEVCAQAL Sbjct: 5 TDNWIAGFDSALRIIAGVAVAARASPALAVEDVAMSEEDRRHSAGLMRVNHVGEVCAQAL 64 Query: 64 YDAQGRFAQKAEIKNAFARAGIEEEDHLAWTAERLRELGSHTSLLNPLWYGGAYVLGSIA 123 Y AQG+FA+ A + FA A EEEDHLAWTAER+ +LGSHTS+LNP+W+ G+Y+LG A Sbjct: 65 YQAQGQFARSAALTGQFAHAAREEEDHLAWTAERIAQLGSHTSVLNPIWFAGSYLLGIAA 124 Query: 124 ARLGDARNLGFVSETERQVEHHLMGHLDKLPAQDNRSRAIVDQMRIDEIEHGQAARDLGA 183 AR GD R+LGFV ETERQVE HL HLD LPA D SRAIV QMR DEI HG AA++LGA Sbjct: 125 ARAGDKRSLGFVVETERQVEAHLTHHLDTLPATDTMSRAIVLQMRDDEIAHGAAAQELGA 184 Query: 184 AEMPAPVKGLMKAMAKVMTTVAYRI 208 +E+P P + LM ++KVMT AY + Sbjct: 185 SELPKPARLLMGVISKVMTRTAYYL 209 >ref|ZP_07677730.1| ubiquinone biosynthesis protein [Ralstonia sp. 5_7_47FAA] gb|EFP63797.1| ubiquinone biosynthesis protein [Ralstonia sp. 5_7_47FAA] Length = 217 Score = 250 bits (638), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 124/217 (57%), Positives = 149/217 (68%), Gaps = 11/217 (5%) Query: 3 FVDELISDFDKALRVINGVVFESRPNPGRGLPDGV-----------MSEAEKRHAAGLMR 51 +D I +FD+ALR + GV SRPNP + +SEA++RHAAGLMR Sbjct: 1 MLDRFIPEFDRALRAVAGVTRASRPNPADAVIASAASANTADNATRLSEADRRHAAGLMR 60 Query: 52 VNNVGEVCAQALYDAQGRFAQKAEIKNAFARAGIEEEDHLAWTAERLRELGSHTSLLNPL 111 VN+VGEVCAQALY Q FAQ I+ A EEEDHLAW A+RL+EL SLLNPL Sbjct: 61 VNHVGEVCAQALYQGQALFAQDPAIRAQLDEAAREEEDHLAWCAQRLQELNDRPSLLNPL 120 Query: 112 WYGGAYVLGSIAARLGDARNLGFVSETERQVEHHLMGHLDKLPAQDNRSRAIVDQMRIDE 171 WY GA+ +G++A RLGD +LGFV+ETERQVEHHL GHLDKLP QD RSRAIV QMR DE Sbjct: 121 WYAGAFAIGALAGRLGDKISLGFVAETERQVEHHLDGHLDKLPEQDTRSRAIVAQMREDE 180 Query: 172 IEHGQAARDLGAAEMPAPVKGLMKAMAKVMTTVAYRI 208 I HG AR G ++PAP++ M+A ++VMT AYRI Sbjct: 181 IRHGDNARQAGGIDLPAPIRQAMRAASRVMTATAYRI 217 >ref|YP_001900654.1| hypothetical protein Rpic_3099 [Ralstonia pickettii 12J] sp|B2UCY7.1|COQ7_RALPJ RecName: Full=2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; AltName: Full=5-demethoxyubiquinone hydroxylase; Short=DMQ hydroxylase gb|ACD28222.1| conserved hypothetical protein [Ralstonia pickettii 12J] Length = 217 Score = 249 bits (637), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 123/217 (56%), Positives = 149/217 (68%), Gaps = 11/217 (5%) Query: 3 FVDELISDFDKALRVINGVVFESRPNPGRGLPDGV-----------MSEAEKRHAAGLMR 51 +D I +FD+ALR + GV SRPNP + +SEA++RHAAGLMR Sbjct: 1 MLDRFIPEFDRALRAVAGVTRASRPNPADAVIASAASTNTADNATKLSEADRRHAAGLMR 60 Query: 52 VNNVGEVCAQALYDAQGRFAQKAEIKNAFARAGIEEEDHLAWTAERLRELGSHTSLLNPL 111 VN+VGEVCAQALY Q FA+ I+ A EEEDHLAW A+RL+EL SLLNPL Sbjct: 61 VNHVGEVCAQALYQGQALFARDPAIRTQLDEAAREEEDHLAWCAQRLQELNDRPSLLNPL 120 Query: 112 WYGGAYVLGSIAARLGDARNLGFVSETERQVEHHLMGHLDKLPAQDNRSRAIVDQMRIDE 171 WY GA+ +G++A RLGD +LGFV+ETERQVEHHL GHLD LP QD RSRAIV QMR DE Sbjct: 121 WYAGAFAIGAVAGRLGDKISLGFVAETERQVEHHLDGHLDTLPEQDTRSRAIVAQMRDDE 180 Query: 172 IEHGQAARDLGAAEMPAPVKGLMKAMAKVMTTVAYRI 208 I HG AR G ++PAP++ M+A ++VMTT AYRI Sbjct: 181 IRHGDNARQAGGIDLPAPIRQAMRAASRVMTTAAYRI 217 >ref|ZP_00945771.1| 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Ralstonia solanacearum UW551] ref|YP_002260803.1| ipr011566 ubiquinone biosynthesis and related protein [Ralstonia solanacearum IPO1609] gb|EAP71740.1| 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Ralstonia solanacearum UW551] emb|CAQ17260.1| ipr011566 ubiquinone biosynthesis and related protein [Ralstonia solanacearum MolK2] emb|CAQ62743.1| ipr011566 ubiquinone biosynthesis and related protein [Ralstonia solanacearum IPO1609] Length = 225 Score = 247 bits (630), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 120/209 (57%), Positives = 148/209 (70%), Gaps = 5/209 (2%) Query: 5 DELISDFDKALRVINGVVFESRPNPGRGL-----PDGVMSEAEKRHAAGLMRVNNVGEVC 59 D I +FD+ALR + G+ SRPNP + +SEAE+RHAAGLMRVN+VGEVC Sbjct: 17 DRFIPEFDRALRAVAGITRASRPNPADAIVAHADDSAKLSEAERRHAAGLMRVNHVGEVC 76 Query: 60 AQALYDAQGRFAQKAEIKNAFARAGIEEEDHLAWTAERLRELGSHTSLLNPLWYGGAYVL 119 AQALY Q FA+ I+ A EEEDHLAW A+RL+EL SLLNPLWY GA+ + Sbjct: 77 AQALYQGQALFARDPAIRAQLDEAAREEEDHLAWCAQRLQELSDRPSLLNPLWYAGAFAI 136 Query: 120 GSIAARLGDARNLGFVSETERQVEHHLMGHLDKLPAQDNRSRAIVDQMRIDEIEHGQAAR 179 G++A RLGD +LGFV+ETERQVEHHL GHLD+LP QD RSRAIV QMR DE+ HG AR Sbjct: 137 GALAGRLGDKISLGFVAETERQVEHHLDGHLDRLPEQDARSRAIVAQMRDDEVRHGDNAR 196 Query: 180 DLGAAEMPAPVKGLMKAMAKVMTTVAYRI 208 G ++P PV+ +M+ +++MTT AYRI Sbjct: 197 AAGGIDLPTPVREVMRFASRIMTTAAYRI 225 >gb|AEG67956.1| ipr011566 ubiquinone biosynthesis and related protein [Ralstonia solanacearum Po82] Length = 242 Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 120/209 (57%), Positives = 148/209 (70%), Gaps = 5/209 (2%) Query: 5 DELISDFDKALRVINGVVFESRPNPGRGL-----PDGVMSEAEKRHAAGLMRVNNVGEVC 59 D I +FD+ALR + G+ SRPNP + +SEAE+RHAAGLMRVN+VGEVC Sbjct: 34 DRFIPEFDRALRAVAGITRASRPNPADAIVAHADDSAKLSEAERRHAAGLMRVNHVGEVC 93 Query: 60 AQALYDAQGRFAQKAEIKNAFARAGIEEEDHLAWTAERLRELGSHTSLLNPLWYGGAYVL 119 AQALY Q FA+ I+ A EEEDHLAW A+RL+EL SLLNPLWY GA+ + Sbjct: 94 AQALYQGQALFARDPAIRAQLDEAAREEEDHLAWCAQRLQELSDRPSLLNPLWYAGAFAI 153 Query: 120 GSIAARLGDARNLGFVSETERQVEHHLMGHLDKLPAQDNRSRAIVDQMRIDEIEHGQAAR 179 G++A RLGD +LGFV+ETERQVEHHL GHLD+LP QD RSRAIV QMR DE+ HG AR Sbjct: 154 GALAGRLGDKISLGFVAETERQVEHHLDGHLDRLPEQDARSRAIVAQMRDDEVRHGDNAR 213 Query: 180 DLGAAEMPAPVKGLMKAMAKVMTTVAYRI 208 G ++P PV+ +M+ +++MTT AYRI Sbjct: 214 AAGGIDLPTPVREVMRFASRIMTTAAYRI 242 >ref|YP_002006730.1| ubiquinone biosynthesis protein [Cupriavidus taiwanensis LMG 19424] sp|B3R6W9.1|COQ7_CUPTR RecName: Full=2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; AltName: Full=5-demethoxyubiquinone hydroxylase; Short=DMQ hydroxylase emb|CAQ70669.1| Putative ubiquinone biosynthesis and related protein [Cupriavidus taiwanensis LMG 19424] Length = 207 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 125/207 (60%), Positives = 149/207 (71%), Gaps = 2/207 (0%) Query: 4 VDELISDFDKALRVINGVVFESRPNPG-RGLPDG-VMSEAEKRHAAGLMRVNNVGEVCAQ 61 +D LI +FD ALR I G +R NP R PD MS E+RH AGLMR+N+VGEVCAQ Sbjct: 1 MDTLIKEFDVALRAIAGATRSARANPADRLAPDTEQMSAEERRHVAGLMRINHVGEVCAQ 60 Query: 62 ALYDAQGRFAQKAEIKNAFARAGIEEEDHLAWTAERLRELGSHTSLLNPLWYGGAYVLGS 121 ALY AQ A+ ++ A EEEDHLAW AERLRELGS SLLNPLWY GA+ +G Sbjct: 61 ALYQAQKLTARNGAVRAQMDAAAREEEDHLAWCAERLRELGSRPSLLNPLWYAGAFAIGW 120 Query: 122 IAARLGDARNLGFVSETERQVEHHLMGHLDKLPAQDNRSRAIVDQMRIDEIEHGQAARDL 181 +A R GD +LGFV+ETERQVEHHL GHLD+LP D+RSRAI++QMR DEI HG AAR+ Sbjct: 121 VAGRAGDRVSLGFVAETERQVEHHLGGHLDRLPESDSRSRAILEQMRDDEIRHGDAAREA 180 Query: 182 GAAEMPAPVKGLMKAMAKVMTTVAYRI 208 G +PAPV+ LM+ ++VMTT AYRI Sbjct: 181 GGMPLPAPVRALMRGASRVMTTAAYRI 207 >ref|YP_004687012.1| 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase Coq [Cupriavidus necator N-1] gb|AEI78531.1| 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase Coq [Cupriavidus necator N-1] Length = 207 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 126/207 (60%), Positives = 148/207 (71%), Gaps = 2/207 (0%) Query: 4 VDELISDFDKALRVINGVVFESRPNPG-RGLPDG-VMSEAEKRHAAGLMRVNNVGEVCAQ 61 +D LI +FD ALR I G +R NP R PD MS E+RH AGLMR+N+VGEVCAQ Sbjct: 1 MDTLIKEFDVALRAIAGATRTARANPADRLAPDTEQMSADERRHVAGLMRINHVGEVCAQ 60 Query: 62 ALYDAQGRFAQKAEIKNAFARAGIEEEDHLAWTAERLRELGSHTSLLNPLWYGGAYVLGS 121 ALY AQ A+ ++ A EEEDHLAW AERLRELGS SLLNPLWY GA+ +G Sbjct: 61 ALYQAQKLTARNGAVRAQMDAAAREEEDHLAWCAERLRELGSRPSLLNPLWYAGAFAIGW 120 Query: 122 IAARLGDARNLGFVSETERQVEHHLMGHLDKLPAQDNRSRAIVDQMRIDEIEHGQAARDL 181 +A R GD +LGFV+ETERQVEHHL GHLD+LP D RSRAI++QMR DEI HG AARD Sbjct: 121 VAGRAGDRVSLGFVAETERQVEHHLGGHLDRLPEADGRSRAILEQMRDDEIRHGDAARDA 180 Query: 182 GAAEMPAPVKGLMKAMAKVMTTVAYRI 208 G +PAPV+ LM+ ++VMTT AYRI Sbjct: 181 GGIPLPAPVRALMRGASRVMTTAAYRI 207 >ref|YP_002982677.1| hypothetical protein Rpic12D_2734 [Ralstonia pickettii 12D] gb|ACS64005.1| conserved hypothetical protein [Ralstonia pickettii 12D] Length = 217 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 122/217 (56%), Positives = 148/217 (68%), Gaps = 11/217 (5%) Query: 3 FVDELISDFDKALRVINGVVFESRPNPGRGLPDGV-----------MSEAEKRHAAGLMR 51 +D I +FD+ALR + G SRPNP + +SEA++RHAAGLMR Sbjct: 1 MLDRFIPEFDRALRAVAGFTRASRPNPADAVIASAASANTADNATKLSEADRRHAAGLMR 60 Query: 52 VNNVGEVCAQALYDAQGRFAQKAEIKNAFARAGIEEEDHLAWTAERLRELGSHTSLLNPL 111 VN+VGEVCAQALY Q FA+ I+ A EEEDHLAW A+RL+EL SLLNPL Sbjct: 61 VNHVGEVCAQALYQGQALFARDPAIRAQLDEAAREEEDHLAWCAQRLQELNDRPSLLNPL 120 Query: 112 WYGGAYVLGSIAARLGDARNLGFVSETERQVEHHLMGHLDKLPAQDNRSRAIVDQMRIDE 171 WY GA+ +G++A RLGD +LGFV+ETERQVEHHL GHLDKLP QD RSRAIV QMR DE Sbjct: 121 WYAGAFAIGALAGRLGDKISLGFVAETERQVEHHLDGHLDKLPEQDTRSRAIVAQMRDDE 180 Query: 172 IEHGQAARDLGAAEMPAPVKGLMKAMAKVMTTVAYRI 208 I HG AR G ++PAP++ M+A ++VMT AYRI Sbjct: 181 IRHGDNARQAGGIDLPAPIRQAMRAASRVMTATAYRI 217