BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0028.p (1413 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773540.1| DNA-directed RNA polymerase subunit beta [He... 2886 0.0 ref|YP_004751055.1| DNA-directed RNA polymerase subunit [Collimo... 2677 0.0 ref|YP_001355109.1| DNA-directed RNA polymerase subunit beta' [J... 2672 0.0 ref|YP_001101402.1| DNA-directed RNA polymerase subunit beta' [H... 2670 0.0 ref|ZP_08273217.1| DNA-directed RNA polymerase beta subunit [Oxa... 2644 0.0 ref|ZP_04579990.1| DNA-directed RNA polymerase subunit beta [Oxa... 2569 0.0 ref|ZP_04577840.1| DNA-directed RNA polymerase subunit beta [Oxa... 2559 0.0 ref|YP_001578434.1| DNA-directed RNA polymerase subunit beta' [B... 2433 0.0 ref|YP_443579.1| DNA-directed RNA polymerase subunit beta' [Burk... 2430 0.0 ref|ZP_01914146.1| DNA-directed RNA polymerase subunit beta' [Li... 2430 0.0 >ref|YP_003773540.1| DNA-directed RNA polymerase subunit beta [Herbaspirillum seropedicae SmR1] gb|ADJ61632.1| DNA-directed RNA polymerase subunit beta protein [Herbaspirillum seropedicae SmR1] Length = 1413 Score = 2886 bits (7481), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1413/1413 (100%), Positives = 1413/1413 (100%) Query: 1 MKALLDLFKQVQQNEQFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60 MKALLDLFKQVQQNEQFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK Sbjct: 1 MKALLDLFKQVQQNEQFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60 Query: 61 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL 120 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL Sbjct: 61 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL 120 Query: 121 PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFIAFM 180 PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFIAFM Sbjct: 121 PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFIAFM 180 Query: 181 GAEGIRELLRSIDIDREAETLRQELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPEWMIME 240 GAEGIRELLRSIDIDREAETLRQELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPEWMIME Sbjct: 181 GAEGIRELLRSIDIDREAETLRQELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPEWMIME 240 Query: 241 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ 300 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ Sbjct: 241 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ 300 Query: 301 EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ 360 EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ Sbjct: 301 EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ 360 Query: 361 LKLHQCGLPKLMALELFKPFIFNKLELMGLSTTIKAAKKLVEAQEPVVWDILEEVIREHP 420 LKLHQCGLPKLMALELFKPFIFNKLELMGLSTTIKAAKKLVEAQEPVVWDILEEVIREHP Sbjct: 361 LKLHQCGLPKLMALELFKPFIFNKLELMGLSTTIKAAKKLVEAQEPVVWDILEEVIREHP 420 Query: 421 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA 480 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA Sbjct: 421 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA 480 Query: 481 RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINGKNEGMMFQDVSEVIRAYDNK 540 RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINGKNEGMMFQDVSEVIRAYDNK Sbjct: 481 RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINGKNEGMMFQDVSEVIRAYDNK 540 Query: 541 EVELATRITVRIVEHPKDPVTGEFVRTVKRYETTIGRAILSEILPKGLPFSVLNRALKKK 600 EVELATRITVRIVEHPKDPVTGEFVRTVKRYETTIGRAILSEILPKGLPFSVLNRALKKK Sbjct: 541 EVELATRITVRIVEHPKDPVTGEFVRTVKRYETTIGRAILSEILPKGLPFSVLNRALKKK 600 Query: 601 EISKLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKATLIAAAES 660 EISKLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKATLIAAAES Sbjct: 601 EISKLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKATLIAAAES 660 Query: 661 EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDEVGKAMMDQLKVEDVITREGKKTTQESF 720 EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDEVGKAMMDQLKVEDVITREGKKTTQESF Sbjct: 661 EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDEVGKAMMDQLKVEDVITREGKKTTQESF 720 Query: 721 NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA 780 NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA Sbjct: 721 NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA 780 Query: 781 RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGSAMKALVEGGEVIEALRDRI 840 RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGSAMKALVEGGEVIEALRDRI Sbjct: 781 RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGSAMKALVEGGEVIEALRDRI 840 Query: 841 LGRVAATDIVNPEDQSTLFEAGTLLDEDKVEEIERMGIDEVKVRTPLTCDTRYGLCAKCY 900 LGRVAATDIVNPEDQSTLFEAGTLLDEDKVEEIERMGIDEVKVRTPLTCDTRYGLCAKCY Sbjct: 841 LGRVAATDIVNPEDQSTLFEAGTLLDEDKVEEIERMGIDEVKVRTPLTCDTRYGLCAKCY 900 Query: 901 GRDLGRGLLVNSGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVR 960 GRDLGRGLLVNSGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVR Sbjct: 901 GRDLGRGLLVNSGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVR 960 Query: 961 FTATMRYVTNGKGEQIVISRSGEVLITDDLGRERERHKVPYGATLIVKDGLTIKAGTALA 1020 FTATMRYVTNGKGEQIVISRSGEVLITDDLGRERERHKVPYGATLIVKDGLTIKAGTALA Sbjct: 961 FTATMRYVTNGKGEQIVISRSGEVLITDDLGRERERHKVPYGATLIVKDGLTIKAGTALA 1020 Query: 1021 TWDPLTRPIITEYSGTVKFENVEEGSTVAKQIDEVTGLSTLVVIDAKRRGPSSKVMRPQV 1080 TWDPLTRPIITEYSGTVKFENVEEGSTVAKQIDEVTGLSTLVVIDAKRRGPSSKVMRPQV Sbjct: 1021 TWDPLTRPIITEYSGTVKFENVEEGSTVAKQIDEVTGLSTLVVIDAKRRGPSSKVMRPQV 1080 Query: 1081 KLLNEQGEEVKIAGTEHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRDITGGL 1140 KLLNEQGEEVKIAGTEHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRDITGGL Sbjct: 1081 KLLNEQGEEVKIAGTEHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRDITGGL 1140 Query: 1141 PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMEGTKHEFLITKDKQVLVH 1200 PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMEGTKHEFLITKDKQVLVH Sbjct: 1141 PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMEGTKHEFLITKDKQVLVH 1200 Query: 1201 DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ 1260 DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ Sbjct: 1201 DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ 1260 Query: 1261 MLRRVQVVEPGDTNYITGEQVERSELLDENDRVTAEGKIPATYENVLLGITKASLSTDSF 1320 MLRRVQVVEPGDTNYITGEQVERSELLDENDRVTAEGKIPATYENVLLGITKASLSTDSF Sbjct: 1261 MLRRVQVVEPGDTNYITGEQVERSELLDENDRVTAEGKIPATYENVLLGITKASLSTDSF 1320 Query: 1321 ISAASFQETTRVLTEAAIMGKKDGLRGLKENVIVGRLIPAGTGLAFHRARKEKDAWEAEE 1380 ISAASFQETTRVLTEAAIMGKKDGLRGLKENVIVGRLIPAGTGLAFHRARKEKDAWEAEE Sbjct: 1321 ISAASFQETTRVLTEAAIMGKKDGLRGLKENVIVGRLIPAGTGLAFHRARKEKDAWEAEE 1380 Query: 1381 RAALLEAERASRSEFGDEEISSTESIGGGEGEA 1413 RAALLEAERASRSEFGDEEISSTESIGGGEGEA Sbjct: 1381 RAALLEAERASRSEFGDEEISSTESIGGGEGEA 1413 >ref|YP_004751055.1| DNA-directed RNA polymerase subunit [Collimonas fungivorans Ter331] gb|AEK60232.1| DNA-directed RNA polymerase subunit [Collimonas fungivorans Ter331] Length = 1411 Score = 2677 bits (6940), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1306/1389 (94%), Positives = 1355/1389 (97%) Query: 1 MKALLDLFKQVQQNEQFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60 MKALLDLFKQVQQNE FD+IKIGLASP+KIRSWS+GEVKKPETINYRTFKPERDGLFCAK Sbjct: 1 MKALLDLFKQVQQNETFDSIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK 60 Query: 61 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL 120 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL Sbjct: 61 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL 120 Query: 121 PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFIAFM 180 PSRLGMVLDMTLRDIERVLYFEAYV+TDPGMTPLK+CQIMSEDDYAAKYEEYGDDF AFM Sbjct: 121 PSRLGMVLDMTLRDIERVLYFEAYVITDPGMTPLKRCQIMSEDDYAAKYEEYGDDFTAFM 180 Query: 181 GAEGIRELLRSIDIDREAETLRQELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPEWMIME 240 GAEGIRELLR+IDIDR+AETLRQELK+SKSEAKIKKYAKRLKVLEAFQRSGIKP+WMIME Sbjct: 181 GAEGIRELLRAIDIDRDAETLRQELKESKSEAKIKKYAKRLKVLEAFQRSGIKPDWMIME 240 Query: 241 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ 300 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ Sbjct: 241 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ 300 Query: 301 EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ 360 EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ Sbjct: 301 EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ 360 Query: 361 LKLHQCGLPKLMALELFKPFIFNKLELMGLSTTIKAAKKLVEAQEPVVWDILEEVIREHP 420 LKLHQCGLPKLMALELFKPFIF+KLE+MG+++TIKAAKK VE Q VVWDILE+VIREHP Sbjct: 361 LKLHQCGLPKLMALELFKPFIFHKLEVMGIASTIKAAKKEVENQTSVVWDILEDVIREHP 420 Query: 421 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA 480 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA Sbjct: 421 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA 480 Query: 481 RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINGKNEGMMFQDVSEVIRAYDNK 540 RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATRE INGK EGMMF DVSE IRAYDNK Sbjct: 481 RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREQINGKGEGMMFPDVSEAIRAYDNK 540 Query: 541 EVELATRITVRIVEHPKDPVTGEFVRTVKRYETTIGRAILSEILPKGLPFSVLNRALKKK 600 EVEL TR+TVRI E+PKDPVTGEFV+T+KRYETT+GRAILSEILPKGLPF+VLNRALKKK Sbjct: 541 EVELTTRVTVRITEYPKDPVTGEFVKTIKRYETTVGRAILSEILPKGLPFTVLNRALKKK 600 Query: 601 EISKLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKATLIAAAES 660 EISKLINT+FRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKAT+IA AE Sbjct: 601 EISKLINTAFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKATIIATAEQ 660 Query: 661 EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDEVGKAMMDQLKVEDVITREGKKTTQESF 720 EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGD+VGKAMM+QLKVEDV+ R+G K TQESF Sbjct: 661 EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDDVGKAMMEQLKVEDVVRRDGTKGTQESF 720 Query: 721 NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA 780 NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA Sbjct: 721 NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA 780 Query: 781 RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGSAMKALVEGGEVIEALRDRI 840 RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNG++MKA+VEGGEVIEALRDRI Sbjct: 781 RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGASMKAMVEGGEVIEALRDRI 840 Query: 841 LGRVAATDIVNPEDQSTLFEAGTLLDEDKVEEIERMGIDEVKVRTPLTCDTRYGLCAKCY 900 LGRVAA DIVNPE Q TL+EAGTLLDED VEEIER+GIDEVKVRTPLTCDTRYGLCA+CY Sbjct: 841 LGRVAANDIVNPETQGTLYEAGTLLDEDAVEEIERLGIDEVKVRTPLTCDTRYGLCAQCY 900 Query: 901 GRDLGRGLLVNSGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVR 960 GRDLGRG LVN+GEAVGVVAAQSIGEPGTQLTMRTFHIGGAASR+AVASSVEAKSNGTVR Sbjct: 901 GRDLGRGSLVNNGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRSAVASSVEAKSNGTVR 960 Query: 961 FTATMRYVTNGKGEQIVISRSGEVLITDDLGRERERHKVPYGATLIVKDGLTIKAGTALA 1020 FTATMRYVTNGKGE IVISRSGEVLITDD GRERERHKVPYGATLIVKDGLTIKAGTALA Sbjct: 961 FTATMRYVTNGKGELIVISRSGEVLITDDHGRERERHKVPYGATLIVKDGLTIKAGTALA 1020 Query: 1021 TWDPLTRPIITEYSGTVKFENVEEGSTVAKQIDEVTGLSTLVVIDAKRRGPSSKVMRPQV 1080 TWDPLTRPIITEY+GTV+FENVEEGSTVA+QIDEVTGLSTLVVIDAKRRG +K +RPQV Sbjct: 1021 TWDPLTRPIITEYTGTVRFENVEEGSTVARQIDEVTGLSTLVVIDAKRRGSVTKTVRPQV 1080 Query: 1081 KLLNEQGEEVKIAGTEHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRDITGGL 1140 KLLNEQGEEVKIAGTEH+VTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRDITGGL Sbjct: 1081 KLLNEQGEEVKIAGTEHAVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRDITGGL 1140 Query: 1141 PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMEGTKHEFLITKDKQVLVH 1200 PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDM+G KHEFLITKDKQVLVH Sbjct: 1141 PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMDGNKHEFLITKDKQVLVH 1200 Query: 1201 DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ 1260 DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ Sbjct: 1201 DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ 1260 Query: 1261 MLRRVQVVEPGDTNYITGEQVERSELLDENDRVTAEGKIPATYENVLLGITKASLSTDSF 1320 MLRRVQ+V+ GD +YITGEQVERSELLDENDRV A GKIPATYENVLLGITKASLSTDSF Sbjct: 1261 MLRRVQIVDAGDASYITGEQVERSELLDENDRVIAAGKIPATYENVLLGITKASLSTDSF 1320 Query: 1321 ISAASFQETTRVLTEAAIMGKKDGLRGLKENVIVGRLIPAGTGLAFHRARKEKDAWEAEE 1380 ISAASFQETTRVLTEAAIMGKKD LRGLKENVIVGRLIPAGTGLAFHRARKEKD+WEAEE Sbjct: 1321 ISAASFQETTRVLTEAAIMGKKDTLRGLKENVIVGRLIPAGTGLAFHRARKEKDSWEAEE 1380 Query: 1381 RAALLEAER 1389 R ALL++E+ Sbjct: 1381 RTALLQSEQ 1389 >ref|YP_001355109.1| DNA-directed RNA polymerase subunit beta' [Janthinobacterium sp. Marseille] sp|A6T3L2.1|RPOC_JANMA RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; AltName: Full=RNA polymerase subunit beta'; AltName: Full=Transcriptase subunit beta' gb|ABR89599.1| DNA-directed RNA polymerase subunit beta' [Janthinobacterium sp. Marseille] Length = 1414 Score = 2672 bits (6925), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1312/1387 (94%), Positives = 1349/1387 (97%) Query: 1 MKALLDLFKQVQQNEQFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60 MKALLDLFKQVQQNEQFDAIKIGLASP+KIRSWS+GEVKKPETINYRTFKPERDGLFCAK Sbjct: 1 MKALLDLFKQVQQNEQFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK 60 Query: 61 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL 120 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL Sbjct: 61 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL 120 Query: 121 PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFIAFM 180 PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEE+GDDF AFM Sbjct: 121 PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEFGDDFTAFM 180 Query: 181 GAEGIRELLRSIDIDREAETLRQELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPEWMIME 240 GAEGIRELLR+IDIDR+AE LRQELKDSKSEAKIKKYAKRLKVLEAFQRSGIKP+WMIME Sbjct: 181 GAEGIRELLRAIDIDRDAEMLRQELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPDWMIME 240 Query: 241 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ 300 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ Sbjct: 241 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ 300 Query: 301 EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ 360 EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ Sbjct: 301 EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ 360 Query: 361 LKLHQCGLPKLMALELFKPFIFNKLELMGLSTTIKAAKKLVEAQEPVVWDILEEVIREHP 420 LKLHQCGLPKLMALELFKPFIFNKLELMGL+TTIKAAKKLVE QEPVVWDILE+VIREHP Sbjct: 361 LKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKAAKKLVEIQEPVVWDILEDVIREHP 420 Query: 421 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA 480 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA Sbjct: 421 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA 480 Query: 481 RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINGKNEGMMFQDVSEVIRAYDNK 540 RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYA+REAIN K EGMMF DVSEVIRAYDNK Sbjct: 481 RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYASREAINAKGEGMMFPDVSEVIRAYDNK 540 Query: 541 EVELATRITVRIVEHPKDPVTGEFVRTVKRYETTIGRAILSEILPKGLPFSVLNRALKKK 600 VELATRITVRI E+PK+ TGEF +TV RYETT+GRAILSEILPKGLPFSVLNRALKKK Sbjct: 541 MVELATRITVRITEYPKNVETGEFEKTVTRYETTVGRAILSEILPKGLPFSVLNRALKKK 600 Query: 601 EISKLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKATLIAAAES 660 EIS+LIN SFRKCGLRATVVFADQL+QSGFRLATRAGISICVDDMLVP QK +IA AES Sbjct: 601 EISRLINLSFRKCGLRATVVFADQLLQSGFRLATRAGISICVDDMLVPKQKVDIIATAES 660 Query: 661 EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDEVGKAMMDQLKVEDVITREGKKTTQESF 720 EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGD+VGKAMMDQLKVEDV R+G KTTQESF Sbjct: 661 EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDDVGKAMMDQLKVEDVTKRDGTKTTQESF 720 Query: 721 NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA 780 NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA Sbjct: 721 NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA 780 Query: 781 RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGSAMKALVEGGEVIEALRDRI 840 RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNG++MKALVEGGEVIEALRDRI Sbjct: 781 RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGASMKALVEGGEVIEALRDRI 840 Query: 841 LGRVAATDIVNPEDQSTLFEAGTLLDEDKVEEIERMGIDEVKVRTPLTCDTRYGLCAKCY 900 LGRVAA DIVNPE Q+TL+ AGTLLDED VEEIER+GIDEVKVRTPLTCDTR+GLCA+CY Sbjct: 841 LGRVAANDIVNPETQATLYAAGTLLDEDMVEEIERLGIDEVKVRTPLTCDTRFGLCAQCY 900 Query: 901 GRDLGRGLLVNSGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVR 960 GRDLGRG LVN+GEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVR Sbjct: 901 GRDLGRGTLVNAGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVR 960 Query: 961 FTATMRYVTNGKGEQIVISRSGEVLITDDLGRERERHKVPYGATLIVKDGLTIKAGTALA 1020 FTATMRYVTNGKG QIVISRSGEVLITDD GRERERHKVPYGATLIVKDG+ IKAGTALA Sbjct: 961 FTATMRYVTNGKGGQIVISRSGEVLITDDHGRERERHKVPYGATLIVKDGMVIKAGTALA 1020 Query: 1021 TWDPLTRPIITEYSGTVKFENVEEGSTVAKQIDEVTGLSTLVVIDAKRRGPSSKVMRPQV 1080 TWDPLTRPIITEY+GTVKFENVEEGSTVA+QIDEVTGLSTLVVIDAKRRG +K +RPQV Sbjct: 1021 TWDPLTRPIITEYTGTVKFENVEEGSTVARQIDEVTGLSTLVVIDAKRRGSVTKTVRPQV 1080 Query: 1081 KLLNEQGEEVKIAGTEHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRDITGGL 1140 KLLNEQGEEVKIAGTEH+VTIGFQVGALITVKDGQQV VGEVLARIPTESQKTRDITGGL Sbjct: 1081 KLLNEQGEEVKIAGTEHAVTIGFQVGALITVKDGQQVTVGEVLARIPTESQKTRDITGGL 1140 Query: 1141 PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMEGTKHEFLITKDKQVLVH 1200 PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDM+G KHEFLITKDKQVLVH Sbjct: 1141 PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMDGNKHEFLITKDKQVLVH 1200 Query: 1201 DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ 1260 DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ Sbjct: 1201 DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ 1260 Query: 1261 MLRRVQVVEPGDTNYITGEQVERSELLDENDRVTAEGKIPATYENVLLGITKASLSTDSF 1320 MLRRVQVV+ GD NYI GEQVERSELLDENDRV A GKIPATYENVLLGITKASLSTDSF Sbjct: 1261 MLRRVQVVDAGDANYIVGEQVERSELLDENDRVIALGKIPATYENVLLGITKASLSTDSF 1320 Query: 1321 ISAASFQETTRVLTEAAIMGKKDGLRGLKENVIVGRLIPAGTGLAFHRARKEKDAWEAEE 1380 ISAASFQETTRVLTEAAIMGKKDGLRGLKENVIVGRLIPAGTGLAFHRARKEKD+WEAEE Sbjct: 1321 ISAASFQETTRVLTEAAIMGKKDGLRGLKENVIVGRLIPAGTGLAFHRARKEKDSWEAEE 1380 Query: 1381 RAALLEA 1387 RAALL++ Sbjct: 1381 RAALLQS 1387 >ref|YP_001101402.1| DNA-directed RNA polymerase subunit beta' [Herminiimonas arsenicoxydans] sp|A4G9U4.1|RPOC_HERAR RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; AltName: Full=RNA polymerase subunit beta'; AltName: Full=Transcriptase subunit beta' emb|CAL63281.1| DNA-directed RNA polymerase subunit beta' (RNAP subunit beta') (Transcriptase subunit beta') (RNA polymerase subunit beta') [Herminiimonas arsenicoxydans] Length = 1414 Score = 2670 bits (6920), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1309/1387 (94%), Positives = 1349/1387 (97%) Query: 1 MKALLDLFKQVQQNEQFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60 MKALLDLFKQVQQNEQFDAIKIGLASP+KIRSWS+GEVKKPETINYRTFKPERDGLFCAK Sbjct: 1 MKALLDLFKQVQQNEQFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK 60 Query: 61 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL 120 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL Sbjct: 61 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL 120 Query: 121 PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFIAFM 180 PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLK+CQIMSEDDYAAKYEE+GDDF AFM Sbjct: 121 PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKRCQIMSEDDYAAKYEEFGDDFTAFM 180 Query: 181 GAEGIRELLRSIDIDREAETLRQELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPEWMIME 240 GAEGIRELLR+IDIDR+AE LRQELKDSKSEAKIKKYAKRLKVLEAFQRSGIKP+WMIME Sbjct: 181 GAEGIRELLRAIDIDRDAEMLRQELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPDWMIME 240 Query: 241 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ 300 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ Sbjct: 241 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ 300 Query: 301 EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ 360 EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ Sbjct: 301 EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ 360 Query: 361 LKLHQCGLPKLMALELFKPFIFNKLELMGLSTTIKAAKKLVEAQEPVVWDILEEVIREHP 420 LKLHQCGLPKLMALELFKPFIFNKLELMGL+TTIKAAKKLVE QEPVVWDILE+VIREHP Sbjct: 361 LKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKAAKKLVEIQEPVVWDILEDVIREHP 420 Query: 421 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA 480 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA Sbjct: 421 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA 480 Query: 481 RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINGKNEGMMFQDVSEVIRAYDNK 540 RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAIN K EGMMF DVSEVIRAYDNK Sbjct: 481 RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINAKGEGMMFPDVSEVIRAYDNK 540 Query: 541 EVELATRITVRIVEHPKDPVTGEFVRTVKRYETTIGRAILSEILPKGLPFSVLNRALKKK 600 EVELATRITVRI E+PK+ TGEF +TV RYETT+GRAILSEILPKGLPFSVLNRALKKK Sbjct: 541 EVELATRITVRITEYPKNVETGEFEKTVTRYETTVGRAILSEILPKGLPFSVLNRALKKK 600 Query: 601 EISKLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKATLIAAAES 660 EIS+LIN SFRKCGLRATVVFADQL+QSGFRLATRAGISICVDDMLVP QK +IA AE Sbjct: 601 EISRLINLSFRKCGLRATVVFADQLLQSGFRLATRAGISICVDDMLVPSQKVDIIATAEG 660 Query: 661 EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDEVGKAMMDQLKVEDVITREGKKTTQESF 720 EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGD+VGKAMMDQLKVEDV R+G KTTQESF Sbjct: 661 EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDDVGKAMMDQLKVEDVTKRDGTKTTQESF 720 Query: 721 NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA 780 NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA Sbjct: 721 NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA 780 Query: 781 RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGSAMKALVEGGEVIEALRDRI 840 RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNG++MKALVEGGEVIEALRDRI Sbjct: 781 RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGASMKALVEGGEVIEALRDRI 840 Query: 841 LGRVAATDIVNPEDQSTLFEAGTLLDEDKVEEIERMGIDEVKVRTPLTCDTRYGLCAKCY 900 LGRVAA DIVNPE Q+TL+ AGTLLDED VEEIER+GIDEVKVRTPLTCDTR+GLCA CY Sbjct: 841 LGRVAANDIVNPETQATLYAAGTLLDEDMVEEIERLGIDEVKVRTPLTCDTRFGLCALCY 900 Query: 901 GRDLGRGLLVNSGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVR 960 GRDLGRG +VN+GEAVGV+AAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVR Sbjct: 901 GRDLGRGSMVNAGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVR 960 Query: 961 FTATMRYVTNGKGEQIVISRSGEVLITDDLGRERERHKVPYGATLIVKDGLTIKAGTALA 1020 FTATMRYVTNGKG QIVISRSGEVLITDDLGRERERHKVPYGATLIVKDGL IKAGTALA Sbjct: 961 FTATMRYVTNGKGGQIVISRSGEVLITDDLGRERERHKVPYGATLIVKDGLVIKAGTALA 1020 Query: 1021 TWDPLTRPIITEYSGTVKFENVEEGSTVAKQIDEVTGLSTLVVIDAKRRGPSSKVMRPQV 1080 TWDPLTRPIITEY+GTVKFENVEEGSTVA+QIDEVTGLSTLVVIDAKRRG +K +RPQV Sbjct: 1021 TWDPLTRPIITEYTGTVKFENVEEGSTVARQIDEVTGLSTLVVIDAKRRGSVTKTVRPQV 1080 Query: 1081 KLLNEQGEEVKIAGTEHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRDITGGL 1140 KLLNEQGEEVKIAGTEH+VTIGFQVGALITVKDGQQV VGEVLARIPTESQKTRDITGGL Sbjct: 1081 KLLNEQGEEVKIAGTEHAVTIGFQVGALITVKDGQQVTVGEVLARIPTESQKTRDITGGL 1140 Query: 1141 PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMEGTKHEFLITKDKQVLVH 1200 PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDM+G KHEFLITKDKQVLVH Sbjct: 1141 PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMDGNKHEFLITKDKQVLVH 1200 Query: 1201 DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ 1260 DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ Sbjct: 1201 DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ 1260 Query: 1261 MLRRVQVVEPGDTNYITGEQVERSELLDENDRVTAEGKIPATYENVLLGITKASLSTDSF 1320 MLRRVQVV+ GD NYI GEQVERSELLDENDRV A+GKIPATYENVLLGITKASLSTDSF Sbjct: 1261 MLRRVQVVDAGDANYIVGEQVERSELLDENDRVIAQGKIPATYENVLLGITKASLSTDSF 1320 Query: 1321 ISAASFQETTRVLTEAAIMGKKDGLRGLKENVIVGRLIPAGTGLAFHRARKEKDAWEAEE 1380 ISAASFQETTRVLTEAAIMGK+DGLRGLKENVIVGRLIPAGTGLAFHRARKEK++WEAEE Sbjct: 1321 ISAASFQETTRVLTEAAIMGKRDGLRGLKENVIVGRLIPAGTGLAFHRARKEKESWEAEE 1380 Query: 1381 RAALLEA 1387 R ALL++ Sbjct: 1381 RTALLQS 1387 >ref|ZP_08273217.1| DNA-directed RNA polymerase beta subunit [Oxalobacteraceae bacterium IMCC9480] gb|EGF33311.1| DNA-directed RNA polymerase beta subunit [Oxalobacteraceae bacterium IMCC9480] Length = 1411 Score = 2644 bits (6853), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1309/1396 (93%), Positives = 1351/1396 (96%), Gaps = 1/1396 (0%) Query: 1 MKALLDLFKQVQQNEQFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60 MKALLDLFKQVQQNEQFDAIKIGLASP+KIRSWS+GEVKKPETINYRTFKPERDGLFCAK Sbjct: 1 MKALLDLFKQVQQNEQFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK 60 Query: 61 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL 120 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL Sbjct: 61 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL 120 Query: 121 PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFIAFM 180 PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEE+GDDF AFM Sbjct: 121 PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEFGDDFTAFM 180 Query: 181 GAEGIRELLRSIDIDREAETLRQELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPEWMIME 240 GAEGIRELLRSIDIDR+AE LRQELK+SKSEAKIKKYAKRLKVLEAFQRSGIKP+WMIME Sbjct: 181 GAEGIRELLRSIDIDRDAEMLRQELKESKSEAKIKKYAKRLKVLEAFQRSGIKPDWMIME 240 Query: 241 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ 300 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRM Q Sbjct: 241 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMFQ 300 Query: 301 EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ 360 EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ Sbjct: 301 EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ 360 Query: 361 LKLHQCGLPKLMALELFKPFIFNKLELMGLSTTIKAAKKLVEAQEPVVWDILEEVIREHP 420 LKLHQCGLPKLMALELFKPFIFNKLELMGL+TTIKAAKKLVE QEPVVWDILE+VIREHP Sbjct: 361 LKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKAAKKLVEIQEPVVWDILEDVIREHP 420 Query: 421 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA 480 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA Sbjct: 421 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA 480 Query: 481 RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINGKNEGMMFQDVSEVIRAYDNK 540 RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATRE INGKNEGMMF DVSEVIRAYDNK Sbjct: 481 RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREKINGKNEGMMFPDVSEVIRAYDNK 540 Query: 541 EVELATRITVRIVEHPKDPVTGEFVRTVKRYETTIGRAILSEILPKGLPFSVLNRALKKK 600 EVEL TR+TVRI E+PK+ TGEF +T+ RYETTIGRAILSEILPKGLPFSVLNRALKKK Sbjct: 541 EVELTTRVTVRITEYPKNLETGEFEKTITRYETTIGRAILSEILPKGLPFSVLNRALKKK 600 Query: 601 EISKLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKATLIAAAES 660 EISKLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQK TLIA AE Sbjct: 601 EISKLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKVTLIATAEQ 660 Query: 661 EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDEVGKAMMDQLKVEDVITREGKKTTQESF 720 EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGD+VGKAMMDQLKVEDVI R+G K+TQESF Sbjct: 661 EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDDVGKAMMDQLKVEDVIRRDGTKSTQESF 720 Query: 721 NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA 780 NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA Sbjct: 721 NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA 780 Query: 781 RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGSAMKALVEGGEVIEALRDRI 840 RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNG++MKA+VEGGEVIEALRDRI Sbjct: 781 RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGASMKAMVEGGEVIEALRDRI 840 Query: 841 LGRVAATDIVNPEDQSTLFEAGTLLDEDKVEEIERMGIDEVKVRTPLTCDTRYGLCAKCY 900 LGRVAA DIV+PE Q+TLF AGTLLDED VEEIER+GIDEVKVRTPLTCDTRYGLC CY Sbjct: 841 LGRVAANDIVHPETQATLFPAGTLLDEDGVEEIERLGIDEVKVRTPLTCDTRYGLCGMCY 900 Query: 901 GRDLGRGLLVNSGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVR 960 GRDLGRG+LVN+GEAVGV+AAQ+IGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNG VR Sbjct: 901 GRDLGRGVLVNAGEAVGVIAAQAIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGIVR 960 Query: 961 FTATMRYVTNGKGEQIVISRSGEVLITDDLGRERERHKVPYGATLIVKDGLTIKAGTALA 1020 FTATMRYVTNGKG QIVISRSGEVLITDD GRERERHKVPYGATL V DGL IKAG LA Sbjct: 961 FTATMRYVTNGKGGQIVISRSGEVLITDDHGRERERHKVPYGATLSVHDGLVIKAGIPLA 1020 Query: 1021 TWDPLTRPIITEYSGTVKFENVEEGSTVAKQIDEVTGLSTLVVIDAKRRGPSSKVMRPQV 1080 TWDPLTRPIITEY+GTV+FENVEEGSTVA+Q+DEVTGLST+VVIDAKRRG SK +RPQV Sbjct: 1021 TWDPLTRPIITEYAGTVRFENVEEGSTVARQVDEVTGLSTMVVIDAKRRGSVSKTVRPQV 1080 Query: 1081 KLLNEQGEEVKIAGTEHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRDITGGL 1140 KLLNEQGEEVKIAGTEH+VTIGFQVGALITVKDGQ V VGEVLARIPTESQKTRDITGGL Sbjct: 1081 KLLNEQGEEVKIAGTEHAVTIGFQVGALITVKDGQHVTVGEVLARIPTESQKTRDITGGL 1140 Query: 1141 PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMEGTKHEFLITKDKQVLVH 1200 PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDM+G KHEFLITKDKQVLVH Sbjct: 1141 PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMDGNKHEFLITKDKQVLVH 1200 Query: 1201 DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ 1260 DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ Sbjct: 1201 DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ 1260 Query: 1261 MLRRVQVVEPGDTNYITGEQVERSELLDENDRVTAEGKIPATYENVLLGITKASLSTDSF 1320 MLRRVQ+V+ GD NYITGEQVERSELLDENDRV A GKIPATYENVLLGITKASLSTDSF Sbjct: 1261 MLRRVQIVDAGDANYITGEQVERSELLDENDRVNAAGKIPATYENVLLGITKASLSTDSF 1320 Query: 1321 ISAASFQETTRVLTEAAIMGKKDGLRGLKENVIVGRLIPAGTGLAFHRARKEKDAWEAEE 1380 ISAASFQETTRVLTEAAIMGK+DGLRGLKENVIVGRLIPAG GLAFHRARKEK+AWEAEE Sbjct: 1321 ISAASFQETTRVLTEAAIMGKRDGLRGLKENVIVGRLIPAGNGLAFHRARKEKEAWEAEE 1380 Query: 1381 RAALLEAERASR-SEF 1395 R ALL+AE+ +R +EF Sbjct: 1381 RTALLQAEKVARNAEF 1396 >ref|ZP_04579990.1| DNA-directed RNA polymerase subunit beta [Oxalobacter formigenes OXCC13] gb|EEO30963.1| DNA-directed RNA polymerase subunit beta [Oxalobacter formigenes OXCC13] Length = 1411 Score = 2569 bits (6659), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1254/1405 (89%), Positives = 1327/1405 (94%) Query: 1 MKALLDLFKQVQQNEQFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60 MKALLDLFKQVQQ+EQFDAIKIGLASP+KIRSWS+GEVKKPETINYRTFKPERDGLFCAK Sbjct: 1 MKALLDLFKQVQQDEQFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK 60 Query: 61 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL 120 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASP AHIWFLKSL Sbjct: 61 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPAAHIWFLKSL 120 Query: 121 PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFIAFM 180 PSRLGMVLDMTLRDIERVLYFEA+VVTDPGMTPLKKCQIMSEDDYAAKYEE+GD+F A M Sbjct: 121 PSRLGMVLDMTLRDIERVLYFEAFVVTDPGMTPLKKCQIMSEDDYAAKYEEFGDEFSASM 180 Query: 181 GAEGIRELLRSIDIDREAETLRQELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPEWMIME 240 GAEGIRELLRSIDI+ EAE LR ELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPEWMIME Sbjct: 181 GAEGIRELLRSIDINAEAELLRNELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPEWMIME 240 Query: 241 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ 300 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL+ELRAPEIITRNEKRMLQ Sbjct: 241 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPEIITRNEKRMLQ 300 Query: 301 EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ 360 EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVI VGPQ Sbjct: 301 EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVITVGPQ 360 Query: 361 LKLHQCGLPKLMALELFKPFIFNKLELMGLSTTIKAAKKLVEAQEPVVWDILEEVIREHP 420 LKLHQCGLPKLMALELFKPFIFNKLELMGL+TTIKAAK+LVE QEPVVWDILEEVIREHP Sbjct: 361 LKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKAAKRLVEIQEPVVWDILEEVIREHP 420 Query: 421 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA 480 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQ+EA Sbjct: 421 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQLEA 480 Query: 481 RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINGKNEGMMFQDVSEVIRAYDNK 540 RTLMLASNNILFPSNGEPSIVPSQD+VLGLYYATRE INGK EGMMF D+SEV RAYDNK Sbjct: 481 RTLMLASNNILFPSNGEPSIVPSQDMVLGLYYATREKINGKGEGMMFTDISEVQRAYDNK 540 Query: 541 EVELATRITVRIVEHPKDPVTGEFVRTVKRYETTIGRAILSEILPKGLPFSVLNRALKKK 600 EVELATRITVR+ ++ KDP++GE V+ + RYETT+GRA+LSEILP+GLPFSVLN LKKK Sbjct: 541 EVELATRITVRLPDYVKDPLSGEMVKRLMRYETTVGRALLSEILPEGLPFSVLNTPLKKK 600 Query: 601 EISKLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKATLIAAAES 660 EIS+LINTSFRKCGLRATVVFAD+LMQSGFRLAT+AGISIC++DMLVP QK LI+ AE Sbjct: 601 EISRLINTSFRKCGLRATVVFADRLMQSGFRLATKAGISICINDMLVPKQKVDLISTAEQ 660 Query: 661 EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDEVGKAMMDQLKVEDVITREGKKTTQESF 720 EVKQIEQQY+SGLVTAGERYNKVVDIWGK GD VGKAMMDQLKV+DV+ R+G TQESF Sbjct: 661 EVKQIEQQYASGLVTAGERYNKVVDIWGKTGDSVGKAMMDQLKVQDVVKRDGSTGTQESF 720 Query: 721 NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA 780 N+IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA Sbjct: 721 NSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA 780 Query: 781 RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGSAMKALVEGGEVIEALRDRI 840 RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGT G MKAL+EGGEVIEAL DRI Sbjct: 781 RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTHEGVVMKALIEGGEVIEALGDRI 840 Query: 841 LGRVAATDIVNPEDQSTLFEAGTLLDEDKVEEIERMGIDEVKVRTPLTCDTRYGLCAKCY 900 LGRV+A DI+NPE + LFEAGTLLDEDK+EEIER+GIDEVKVRTPLTC+TRYG+CAKCY Sbjct: 841 LGRVSANDIINPESREVLFEAGTLLDEDKIEEIERLGIDEVKVRTPLTCETRYGMCAKCY 900 Query: 901 GRDLGRGLLVNSGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVR 960 GRDLGRG LVNSGEAVGV+AAQSIGEPGTQLTMRTFHIGGAASR+AVASSVEA+SNGT+ Sbjct: 901 GRDLGRGSLVNSGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSAVASSVEARSNGTIH 960 Query: 961 FTATMRYVTNGKGEQIVISRSGEVLITDDLGRERERHKVPYGATLIVKDGLTIKAGTALA 1020 FT+TMRYVTN KG+QIVISRSGE++ITDD+GRERERHKVPYGATL+V DGL +KAG LA Sbjct: 961 FTSTMRYVTNDKGDQIVISRSGEIIITDDVGRERERHKVPYGATLLVNDGLPVKAGKVLA 1020 Query: 1021 TWDPLTRPIITEYSGTVKFENVEEGSTVAKQIDEVTGLSTLVVIDAKRRGPSSKVMRPQV 1080 TWDP+TRPIITEY+GT++FENVEEG TVA+Q+DEVTGLSTLVVID KRRG S+K RPQV Sbjct: 1021 TWDPMTRPIITEYAGTIRFENVEEGVTVARQVDEVTGLSTLVVIDPKRRGTSTKSARPQV 1080 Query: 1081 KLLNEQGEEVKIAGTEHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRDITGGL 1140 KLLN+ GEEVKIAGTEH+VTI FQVGAL+ V+DGQ+V VGEVLARIPTESQKTRDITGGL Sbjct: 1081 KLLNDSGEEVKIAGTEHAVTISFQVGALLMVQDGQKVSVGEVLARIPTESQKTRDITGGL 1140 Query: 1141 PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMEGTKHEFLITKDKQVLVH 1200 PRVAELFEARSPKDAG LAEVTGTVAFGKETKGKQRLEITDM+G +HEFLI KDKQVLVH Sbjct: 1141 PRVAELFEARSPKDAGTLAEVTGTVAFGKETKGKQRLEITDMDGNRHEFLIGKDKQVLVH 1200 Query: 1201 DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ 1260 DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ Sbjct: 1201 DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ 1260 Query: 1261 MLRRVQVVEPGDTNYITGEQVERSELLDENDRVTAEGKIPATYENVLLGITKASLSTDSF 1320 MLRRV VV+ GDT+YITGEQVERSELLDENDRV AEGK PATYENVLLGITKASLSTDSF Sbjct: 1261 MLRRVNVVDAGDTSYITGEQVERSELLDENDRVIAEGKRPATYENVLLGITKASLSTDSF 1320 Query: 1321 ISAASFQETTRVLTEAAIMGKKDGLRGLKENVIVGRLIPAGTGLAFHRARKEKDAWEAEE 1380 ISAASFQETTRVLTEAAIMGKKDGLRGLKENVIVGRLIPAGTGLA HRARK+K WE EE Sbjct: 1321 ISAASFQETTRVLTEAAIMGKKDGLRGLKENVIVGRLIPAGTGLAMHRARKQKSVWEQEE 1380 Query: 1381 RAALLEAERASRSEFGDEEISSTES 1405 RAAL AE+ E ++IS S Sbjct: 1381 RAALQRAEQELPQEEPMQDISDVVS 1405 >ref|ZP_04577840.1| DNA-directed RNA polymerase subunit beta [Oxalobacter formigenes HOxBLS] gb|EEO28802.1| DNA-directed RNA polymerase subunit beta [Oxalobacter formigenes HOxBLS] Length = 1407 Score = 2559 bits (6632), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1243/1394 (89%), Positives = 1319/1394 (94%) Query: 1 MKALLDLFKQVQQNEQFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60 MKALLDLFKQVQQ+EQFDAIKIGLASPDKIRSWS+GEVKKPETINYRTFKPERDGLFCAK Sbjct: 1 MKALLDLFKQVQQDEQFDAIKIGLASPDKIRSWSYGEVKKPETINYRTFKPERDGLFCAK 60 Query: 61 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL 120 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASP AHIWFLKSL Sbjct: 61 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPAAHIWFLKSL 120 Query: 121 PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFIAFM 180 PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEE+GD+F A M Sbjct: 121 PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEFGDEFSASM 180 Query: 181 GAEGIRELLRSIDIDREAETLRQELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPEWMIME 240 GAEGIRELLRSIDIDREAE LR ELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPEWMIME Sbjct: 181 GAEGIRELLRSIDIDREAEVLRNELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPEWMIME 240 Query: 241 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ 300 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL+ELRAPEIITRNEKRMLQ Sbjct: 241 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPEIITRNEKRMLQ 300 Query: 301 EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ 360 EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVI VGPQ Sbjct: 301 EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVITVGPQ 360 Query: 361 LKLHQCGLPKLMALELFKPFIFNKLELMGLSTTIKAAKKLVEAQEPVVWDILEEVIREHP 420 LKLHQCGLPKLMALELFKPFIFNKLELMGL+TTIKAAK+LVE QEPVVWDILEEVIREHP Sbjct: 361 LKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKAAKRLVELQEPVVWDILEEVIREHP 420 Query: 421 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA 480 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQ+EA Sbjct: 421 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQLEA 480 Query: 481 RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINGKNEGMMFQDVSEVIRAYDNK 540 RTLMLASNN+LFPSNGEPSIVPSQD+VLGLYYATRE INGK EGM+F D++EV RAYDNK Sbjct: 481 RTLMLASNNVLFPSNGEPSIVPSQDMVLGLYYATREKINGKGEGMLFADIAEVQRAYDNK 540 Query: 541 EVELATRITVRIVEHPKDPVTGEFVRTVKRYETTIGRAILSEILPKGLPFSVLNRALKKK 600 EVELATRITVR+ ++ KDP++GE V+ + RYETT+GR +LSEILP+GLPFSVLN LKKK Sbjct: 541 EVELATRITVRLPDYVKDPISGETVKKLVRYETTVGRTLLSEILPEGLPFSVLNTPLKKK 600 Query: 601 EISKLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKATLIAAAES 660 EIS+LINTSFRKCGLRATVVFAD LMQ+GFRLAT+AGISIC++DMLVP QK LI+AAE Sbjct: 601 EISRLINTSFRKCGLRATVVFADHLMQAGFRLATKAGISICINDMLVPKQKVELISAAEQ 660 Query: 661 EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDEVGKAMMDQLKVEDVITREGKKTTQESF 720 EVKQIEQQY+SGLVT+GERYNKVVDIWGK GD VGKAMMDQLKVE+V+ R+G TQESF Sbjct: 661 EVKQIEQQYASGLVTSGERYNKVVDIWGKTGDSVGKAMMDQLKVEEVVKRDGSAGTQESF 720 Query: 721 NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA 780 N+IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA Sbjct: 721 NSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA 780 Query: 781 RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGSAMKALVEGGEVIEALRDRI 840 RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGT G MKAL+EGGEV+EAL DRI Sbjct: 781 RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTHEGVVMKALIEGGEVVEALGDRI 840 Query: 841 LGRVAATDIVNPEDQSTLFEAGTLLDEDKVEEIERMGIDEVKVRTPLTCDTRYGLCAKCY 900 LGRV+A DI+NPE + L+EAGTLLDEDK+EEIER+GIDEVKVRTPLTC+TRYG+CAKCY Sbjct: 841 LGRVSANDIINPESREVLYEAGTLLDEDKIEEIERLGIDEVKVRTPLTCETRYGMCAKCY 900 Query: 901 GRDLGRGLLVNSGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVR 960 GRDLGRG LVN+GEAVGV+AAQSIGEPGTQLTMRTFHIGGAASR+AVASSVEA+SNGT+ Sbjct: 901 GRDLGRGSLVNAGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSAVASSVEARSNGTIH 960 Query: 961 FTATMRYVTNGKGEQIVISRSGEVLITDDLGRERERHKVPYGATLIVKDGLTIKAGTALA 1020 FT+TMRYVTN KG+QIVISRSGE+ ITDD+GRERERHKVPYGATL+V D L +KAG LA Sbjct: 961 FTSTMRYVTNDKGDQIVISRSGEITITDDVGRERERHKVPYGATLLVNDSLPVKAGKVLA 1020 Query: 1021 TWDPLTRPIITEYSGTVKFENVEEGSTVAKQIDEVTGLSTLVVIDAKRRGPSSKVMRPQV 1080 TWDP+TRPIITEY+GT++FENVEEG TVA+Q+DEVTGLSTLVVID KRRG ++K RPQV Sbjct: 1021 TWDPMTRPIITEYAGTIRFENVEEGVTVARQVDEVTGLSTLVVIDPKRRGTATKSARPQV 1080 Query: 1081 KLLNEQGEEVKIAGTEHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRDITGGL 1140 KLLNE GEEVKIAGTEH+VTI FQVGAL+ V+DGQ+V VGEVLARIPTESQKTRDITGGL Sbjct: 1081 KLLNENGEEVKIAGTEHAVTISFQVGALLMVQDGQKVSVGEVLARIPTESQKTRDITGGL 1140 Query: 1141 PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMEGTKHEFLITKDKQVLVH 1200 PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDM+G +HEFLI KDKQVLVH Sbjct: 1141 PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMDGNRHEFLIGKDKQVLVH 1200 Query: 1201 DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ 1260 DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ Sbjct: 1201 DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ 1260 Query: 1261 MLRRVQVVEPGDTNYITGEQVERSELLDENDRVTAEGKIPATYENVLLGITKASLSTDSF 1320 MLRRV VV+ GDT YI GEQVERSELLDENDRV AEGK PATYENVLLGITKASLSTDSF Sbjct: 1261 MLRRVNVVDAGDTCYIPGEQVERSELLDENDRVIAEGKRPATYENVLLGITKASLSTDSF 1320 Query: 1321 ISAASFQETTRVLTEAAIMGKKDGLRGLKENVIVGRLIPAGTGLAFHRARKEKDAWEAEE 1380 ISAASFQETTRVLTEAAIMGKKD LRGLKENVIVGRLIPAGTGLA HRARK+K WE EE Sbjct: 1321 ISAASFQETTRVLTEAAIMGKKDSLRGLKENVIVGRLIPAGTGLAMHRARKQKSVWEQEE 1380 Query: 1381 RAALLEAERASRSE 1394 RAAL +E+ + + Sbjct: 1381 RAALQRSEQMQQEQ 1394 >ref|YP_001578434.1| DNA-directed RNA polymerase subunit beta' [Burkholderia multivorans ATCC 17616] ref|YP_001947433.1| DNA-directed RNA polymerase subunit beta' [Burkholderia multivorans ATCC 17616] ref|ZP_03574596.1| DNA-directed RNA polymerase, beta' subunit [Burkholderia multivorans CGD2M] ref|ZP_03580377.1| DNA-directed RNA polymerase, beta' subunit [Burkholderia multivorans CGD2] ref|ZP_03586480.1| DNA-directed RNA polymerase, beta' subunit [Burkholderia multivorans CGD1] sp|A9ADI6.1|RPOC_BURM1 RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; AltName: Full=RNA polymerase subunit beta'; AltName: Full=Transcriptase subunit beta' gb|ABX13937.1| DNA-directed RNA polymerase, beta' subunit [Burkholderia multivorans ATCC 17616] dbj|BAG44897.1| DNA-directed RNA polymerase, beta' subunit [Burkholderia multivorans ATCC 17616] gb|EED99428.1| DNA-directed RNA polymerase, beta' subunit [Burkholderia multivorans CGD1] gb|EEE05392.1| DNA-directed RNA polymerase, beta' subunit [Burkholderia multivorans CGD2] gb|EEE10783.1| DNA-directed RNA polymerase, beta' subunit [Burkholderia multivorans CGD2M] Length = 1413 Score = 2433 bits (6305), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1200/1395 (86%), Positives = 1279/1395 (91%), Gaps = 6/1395 (0%) Query: 1 MKALLDLFKQVQQNEQFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60 MKALLDLFKQVQQ E FDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK Sbjct: 1 MKALLDLFKQVQQEEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60 Query: 61 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL 120 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASP AHIWFLKSL Sbjct: 61 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL 120 Query: 121 PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFIAFM 180 PSRLGMVLDMTLRDIERVLYFEAYVV DPGMTPLK QIM+E+DY K EEYGD+F A M Sbjct: 121 PSRLGMVLDMTLRDIERVLYFEAYVVIDPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM 180 Query: 181 GAEGIRELLRSIDIDREAETLRQELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPEWMIME 240 GAEG+RELLR+I+ID + E LR ELK++ SEAKIKKYAKRLKVLEAFQRSGIKPEWMI+E Sbjct: 181 GAEGVRELLRAINIDEQVEQLRTELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPEWMILE 240 Query: 241 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ 300 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL+EL+APEII RNEKRMLQ Sbjct: 241 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ 300 Query: 301 EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ 360 EAVDSLLDNGRRGKAMTGANKRPLKSLA+MIKGKGGRFRQNLLGKRVDYSGRSVIVVGP Sbjct: 301 EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT 360 Query: 361 LKLHQCGLPKLMALELFKPFIFNKLELMGLSTTIKAAKKLVEAQEPVVWDILEEVIREHP 420 LKLHQCGLPKLMALELFKPFIFNKLE+MG++TTIKAAKK VE Q PVVWDILEEVIREHP Sbjct: 361 LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHP 420 Query: 421 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA 480 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLS+EAQMEA Sbjct: 421 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA 480 Query: 481 RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINGKNEGMMFQDVSEVIRAYDNK 540 RTLMLASNN+LFP+NG+PSIVPSQDIVLGLYYATREAINGK EG+ F VSEVIRAY+NK Sbjct: 481 RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAINGKGEGLTFTGVSEVIRAYENK 540 Query: 541 EVELATRITVRIVE----HPKDPVTGEFVRTVKRYETTIGRAILSEILPKGLPFSVLNRA 596 EVELA+R+ VRI E K EFV + Y TT+GRAILSEILP GLPFSVLN+ Sbjct: 541 EVELASRVNVRITEMVRNEDKSEGAPEFVPKISLYATTVGRAILSEILPPGLPFSVLNKP 600 Query: 597 LKKKEISKLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKATLIA 656 LKKKEIS+LINT+FRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQK T++ Sbjct: 601 LKKKEISRLINTAFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKETIVG 660 Query: 657 AAESEVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDEVGKAMMDQLKVEDVITREGKKTT 716 A +VK+ ++QY SGLVTA ERYN VVDIW + VGKAMM+QL E VI R+G +T Sbjct: 661 DAAKKVKEYDRQYMSGLVTAQERYNNVVDIWSATSEAVGKAMMEQLSTEPVIDRDGNETR 720 Query: 717 QESFNAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS 776 QESFN+IYMMADSGARGSA QIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS Sbjct: 721 QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS 780 Query: 777 THGARKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGSAMKALVEGGEVIEAL 836 THGARKGLADTALKTANSGYLTRRLVDVTQDLVV+EDDCGTSNG AMKALVEGGEV+EAL Sbjct: 781 THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEAL 840 Query: 837 RDRILGRVAATDIVNPEDQSTLFEAGTLLDEDKVEEIERMGIDEVKVRTPLTCDTRYGLC 896 RDRILGRVA D+VNPE Q TL+EAGTLLDE VEEIER+GIDEV+VRTPLTC+TRYGLC Sbjct: 841 RDRILGRVAVADVVNPETQETLYEAGTLLDETAVEEIERLGIDEVRVRTPLTCETRYGLC 900 Query: 897 AKCYGRDLGRGLLVNSGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN 956 A CYGRDLGRG LVN GEAVGV+AAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN Sbjct: 901 ASCYGRDLGRGTLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN 960 Query: 957 GTVRFTATMRYVTNGKGEQIVISRSGEVLITDDLGRERERHKVPYGATLIVKDGLTIKAG 1016 GTVRF+ +MRYVTN KGEQIVISRSGE LITDD+GRERERHK+PYGATL+ DG IKAG Sbjct: 961 GTVRFSPSMRYVTNAKGEQIVISRSGEALITDDIGRERERHKIPYGATLLQLDGAAIKAG 1020 Query: 1017 TALATWDPLTRPIITEYSGTVKFENVEEGSTVAKQIDEVTGLSTLVVIDAKRRGP-SSKV 1075 T LATWDP+TRPIITEY GTVKFENVEEG TVAKQID+VTGLSTLVVIDAKRRG +SK Sbjct: 1021 TQLATWDPMTRPIITEYGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDAKRRGSQASKS 1080 Query: 1076 MRPQVKLLNEQGEEVKIAGTEHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRD 1135 +RPQVKLL+ G+EVKI GTEHSV IGFQVGALITVKDGQQV VGEVLARIPTESQKTRD Sbjct: 1081 VRPQVKLLDANGDEVKIPGTEHSVQIGFQVGALITVKDGQQVQVGEVLARIPTESQKTRD 1140 Query: 1136 ITGGLPRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMEGTKHEFLITKDK 1195 ITGGLPRVAELFEARSPKDAG+LAEVTGTV+FGK+TKGKQRL ITD+EG +HEFLI K+K Sbjct: 1141 ITGGLPRVAELFEARSPKDAGILAEVTGTVSFGKDTKGKQRLVITDLEGNQHEFLIAKEK 1200 Query: 1196 QVLVHDGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIE 1255 QVLVHDGQVVNKGEMIVDGPADP DILRL GIEAL+RYIVDEVQDVYRLQGVKINDKHIE Sbjct: 1201 QVLVHDGQVVNKGEMIVDGPADPHDILRLQGIEALSRYIVDEVQDVYRLQGVKINDKHIE 1260 Query: 1256 VIVRQMLRRVQVVEPGDTNYITGEQVERSELLDENDRVTAEGKIPATYENVLLGITKASL 1315 VIVRQMLRRVQ+ + GD+ +I GEQVERS++LDENDR+ AEGK PA+YENVLLGITKASL Sbjct: 1261 VIVRQMLRRVQITDNGDSRFIPGEQVERSDMLDENDRMIAEGKRPASYENVLLGITKASL 1320 Query: 1316 STDSFISAASFQETTRVLTEAAIMGKKDGLRGLKENVIVGRLIPAGTGLAFHRARKEKDA 1375 STDSFISAASFQETTRVLTEAAIMGK+D LRGLKENVIVGRLIPAGTGLAFH+ARK K+ Sbjct: 1321 STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKAKEM 1380 Query: 1376 WEAEERAALLEAERA 1390 + ER + AE A Sbjct: 1381 SD-RERFDQIAAEEA 1394 >ref|YP_443579.1| DNA-directed RNA polymerase subunit beta' [Burkholderia thailandensis E264] ref|ZP_02375503.1| DNA-directed RNA polymerase subunit beta' [Burkholderia thailandensis TXDOH] ref|ZP_02389374.1| DNA-directed RNA polymerase subunit beta' [Burkholderia thailandensis Bt4] ref|ZP_05585900.1| DNA-directed RNA polymerase subunit beta' [Burkholderia thailandensis E264] sp|Q2SU20.1|RPOC_BURTA RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; AltName: Full=RNA polymerase subunit beta'; AltName: Full=Transcriptase subunit beta' gb|ABC37639.1| DNA-directed RNA polymerase, beta' subunit [Burkholderia thailandensis E264] Length = 1412 Score = 2430 bits (6299), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1202/1401 (85%), Positives = 1283/1401 (91%), Gaps = 8/1401 (0%) Query: 1 MKALLDLFKQVQQNEQFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60 MKALLDLFKQVQQ E FDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK Sbjct: 1 MKALLDLFKQVQQEEIFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60 Query: 61 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL 120 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASP AHIWFLKSL Sbjct: 61 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL 120 Query: 121 PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFIAFM 180 PSRLGMVLDMTLRDIERVLYFEAYVV DPGMTPLK QIM+E+DY K EEYGD+F A M Sbjct: 121 PSRLGMVLDMTLRDIERVLYFEAYVVIDPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM 180 Query: 181 GAEGIRELLRSIDIDREAETLRQELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPEWMIME 240 GAEG+RELLRSI+ID + ETLR ELK++ SEAKIKKYAKRLKVLEAFQRSGIKP+WMI+E Sbjct: 181 GAEGVRELLRSINIDEQVETLRTELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPDWMILE 240 Query: 241 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ 300 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL+EL+APEII RNEKRMLQ Sbjct: 241 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ 300 Query: 301 EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ 360 EAVDSLLDNGRRGKAMTGANKRPLKSLA+MIKGKGGRFRQNLLGKRVDYSGRSVIVVGP Sbjct: 301 EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT 360 Query: 361 LKLHQCGLPKLMALELFKPFIFNKLELMGLSTTIKAAKKLVEAQEPVVWDILEEVIREHP 420 LKLHQCGLPKLMALELFKPFIFNKLE+MG++TTIKAAKK VE Q PVVWDILEEVIREHP Sbjct: 361 LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHP 420 Query: 421 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA 480 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLS+EAQMEA Sbjct: 421 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA 480 Query: 481 RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINGKNEGMMFQDVSEVIRAYDNK 540 RTLMLASNN+LFP+NG+PSIVPSQDIVLGLYYATREAINGK EG+ F VSEVIRAY+NK Sbjct: 481 RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAINGKGEGLSFTGVSEVIRAYENK 540 Query: 541 EVELATRITVRIVEHPKDPVTGE----FVRTVKRYETTIGRAILSEILPKGLPFSVLNRA 596 EVELA+R+ VRI E ++ T E FV + Y TT+GRAILSEILP GLPFSVLN+ Sbjct: 541 EVELASRVNVRITEMVRNEDTSEGAPQFVPKISLYATTVGRAILSEILPPGLPFSVLNKP 600 Query: 597 LKKKEISKLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKATLIA 656 LKKKEIS+LINT+FRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVP QK ++ Sbjct: 601 LKKKEISRLINTAFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPTQKEQIVG 660 Query: 657 AAESEVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDEVGKAMMDQLKVEDVITREGKKTT 716 A +VK+ ++QY SGLVTA ERYN VVDIW + VGKAMM+QL E V+ R+G +T Sbjct: 661 DAAKKVKEYDRQYMSGLVTAQERYNNVVDIWSATSEAVGKAMMEQLSTEPVVDRDGNETR 720 Query: 717 QESFNAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS 776 QESFN+IYMMADSGARGSA QIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS Sbjct: 721 QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS 780 Query: 777 THGARKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGSAMKALVEGGEVIEAL 836 THGARKGLADTALKTANSGYLTRRLVDVTQDLVV+EDDCGTSNG AMKALVEGGEV+EAL Sbjct: 781 THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEAL 840 Query: 837 RDRILGRVAATDIVNPEDQSTLFEAGTLLDEDKVEEIERMGIDEVKVRTPLTCDTRYGLC 896 RDRILGRVAA+D+VNPE Q TL+EAGTLLDE VE+IER+GIDEV+VRT LTC+TRYGLC Sbjct: 841 RDRILGRVAASDVVNPETQETLYEAGTLLDETAVEDIERLGIDEVRVRTALTCETRYGLC 900 Query: 897 AKCYGRDLGRGLLVNSGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN 956 A CYGRDLGRG LVN GEAVGV+AAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN Sbjct: 901 ASCYGRDLGRGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN 960 Query: 957 GTVRFTATMRYVTNGKGEQIVISRSGEVLITDDLGRERERHKVPYGATLIVKDGLTIKAG 1016 GTVRFTATMRYVTN KGEQIVISRSGE +ITDD+GRERERHKVPYGATL+ DG IKAG Sbjct: 961 GTVRFTATMRYVTNAKGEQIVISRSGEAMITDDIGRERERHKVPYGATLLQLDGAQIKAG 1020 Query: 1017 TALATWDPLTRPIITEYSGTVKFENVEEGSTVAKQIDEVTGLSTLVVIDAKRRGP-SSKV 1075 T LATWDPLTRPIITEY GTVKFENVEEG TVAKQID+VTGLSTLVVID KRRG +SK Sbjct: 1021 TQLATWDPLTRPIITEYGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQASKS 1080 Query: 1076 MRPQVKLLNEQGEEVKIAGTEHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRD 1135 +RPQVKLL+ GEEVKI GTEH+V IGFQVGALITVKDGQQV VGEVLARIPTE+QKTRD Sbjct: 1081 VRPQVKLLDANGEEVKIPGTEHAVQIGFQVGALITVKDGQQVQVGEVLARIPTEAQKTRD 1140 Query: 1136 ITGGLPRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMEGTKHEFLITKDK 1195 ITGGLPRVAELFEARSPKDAG+LAEVTGT +FGK+TKGKQRL ITD+EG +HEFLI K+K Sbjct: 1141 ITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVITDLEGNQHEFLIAKEK 1200 Query: 1196 QVLVHDGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIE 1255 QVLVHD QVVNKGEMIVDGPADP DILRL GIEAL+RYIVDEVQDVYRLQGVKINDKHIE Sbjct: 1201 QVLVHDAQVVNKGEMIVDGPADPHDILRLQGIEALSRYIVDEVQDVYRLQGVKINDKHIE 1260 Query: 1256 VIVRQMLRRVQVVEPGDTNYITGEQVERSELLDENDRVTAEGKIPATYENVLLGITKASL 1315 VIVRQMLRRVQ+V+ GDT +I GEQVERS++LDENDR+ AEGK PATYEN+LLGITKASL Sbjct: 1261 VIVRQMLRRVQIVDNGDTRFIPGEQVERSDMLDENDRMIAEGKRPATYENILLGITKASL 1320 Query: 1316 STDSFISAASFQETTRVLTEAAIMGKKDGLRGLKENVIVGRLIPAGTGLAFHRARKEKDA 1375 STDSFISAASFQETTRVLTEAAIMGK+D LRGLKENVIVGRLIPAGTGLAFH+ARK K+ Sbjct: 1321 STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKAKEQ 1380 Query: 1376 WEAEERAALLEAERASRSEFG 1396 + ER + AE A EFG Sbjct: 1381 SD-RERFDQIAAEEA--FEFG 1398 >ref|ZP_01914146.1| DNA-directed RNA polymerase subunit beta' [Limnobacter sp. MED105] gb|EDM84382.1| DNA-directed RNA polymerase subunit beta' [Limnobacter sp. MED105] Length = 1399 Score = 2430 bits (6297), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1173/1394 (84%), Positives = 1275/1394 (91%), Gaps = 1/1394 (0%) Query: 1 MKALLDLFKQVQQNEQFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60 MKALLDLFKQVQQ+EQFDAIKI +ASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK Sbjct: 1 MKALLDLFKQVQQDEQFDAIKIAIASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60 Query: 61 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL 120 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHI+LASP AHIWFLKSL Sbjct: 61 IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIDLASPVAHIWFLKSL 120 Query: 121 PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFIAFM 180 PSRLGMVLDMTLRDIERVLYFE +VV +PGMTPLK+ Q+++E+DY AK EEYGDDF+AFM Sbjct: 121 PSRLGMVLDMTLRDIERVLYFEGFVVVEPGMTPLKRAQLLTEEDYLAKQEEYGDDFVAFM 180 Query: 181 GAEGIRELLRSIDIDREAETLRQELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPEWMIME 240 GAEGI+ELL+SIDIDRE TLR+EL + SEAKIKK AKRLKVLE FQ+SGIKPEWMI+E Sbjct: 181 GAEGIKELLKSIDIDREVTTLREELGTTNSEAKIKKIAKRLKVLEGFQKSGIKPEWMILE 240 Query: 241 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ 300 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL+EL AP+II RNEKRMLQ Sbjct: 241 VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQ 300 Query: 301 EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ 360 EAVDSLLDNGRRGKAMTGANKRPLKSLA+MIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ Sbjct: 301 EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ 360 Query: 361 LKLHQCGLPKLMALELFKPFIFNKLELMGLSTTIKAAKKLVEAQEPVVWDILEEVIREHP 420 LKLHQCGLPKLMALELFKPFIFN+LE+MG++TTIK AKK VE QEP+VWDILEEVIREHP Sbjct: 361 LKLHQCGLPKLMALELFKPFIFNRLEVMGIATTIKQAKKFVENQEPIVWDILEEVIREHP 420 Query: 421 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA 480 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLS+EAQ+EA Sbjct: 421 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQIEA 480 Query: 481 RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINGKNEGMMFQDVSEVIRAYDNK 540 RTLMLASNN+LFP+NG+PSIVPSQDIVLGLYY TR+ +NG+NEG+MF DVSE RAYDNK Sbjct: 481 RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYTTRDKVNGRNEGIMFSDVSEANRAYDNK 540 Query: 541 EVELATRITVRIVEHPKDPVTGEFVRTVKRYETTIGRAILSEILPKGLPFSVLNRALKKK 600 EVELATR+TVRI E+ + TGE RYETT+GRA+LSEILP GLPFS ++R LKKK Sbjct: 541 EVELATRVTVRITEYDVNKETGEKTSKRTRYETTVGRALLSEILPPGLPFSFIDRPLKKK 600 Query: 601 EISKLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKATLIAAAES 660 EIS+LIN SFR+CGLR TV+FAD+LMQ GFR+ATR GISI + DM+VP QK +IAAAE+ Sbjct: 601 EISRLINASFRRCGLRETVIFADKLMQFGFRMATRGGISIAMGDMVVPAQKQVIIAAAEA 660 Query: 661 EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDEVGKAMMDQLKVEDVITREGKKTTQESF 720 EVK+I+ QY+SGLVT GERYNKVVDIWG+AGD+VGKAMM+QL E VI R G + QESF Sbjct: 661 EVKEIQSQYTSGLVTQGERYNKVVDIWGRAGDQVGKAMMEQLATEPVIDRNGNEVRQESF 720 Query: 721 NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA 780 NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPI ANFREGLNVLQYFISTHGA Sbjct: 721 NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIIANFREGLNVLQYFISTHGA 780 Query: 781 RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGSAMKALVEGGEVIEALRDRI 840 RKGLADTALKTANSGYLTRRLVDVTQDLVV+EDDCGTSNG AMKALVEGGEVIEALRDRI Sbjct: 781 RKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVIEALRDRI 840 Query: 841 LGRVAATDIVNPEDQSTLFEAGTLLDEDKVEEIERMGIDEVKVRTPLTCDTRYGLCAKCY 900 LGRV +D+VNPE Q T+FE G LLDED VE I+ +GIDEV+VRTPL+CDTRYGLCAKCY Sbjct: 841 LGRVVVSDVVNPETQETVFEVGKLLDEDAVELIDHLGIDEVRVRTPLSCDTRYGLCAKCY 900 Query: 901 GRDLGRGLLVNSGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVR 960 GRDLGRG LVN+GEAVGV+AAQSIGEPGTQLTMRTFHIGGAASRAAV SS+EAKSNG +R Sbjct: 901 GRDLGRGYLVNNGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVVSSIEAKSNGVIR 960 Query: 961 FTATMRYVTNGKGEQIVISRSGEVLITDDLGRERERHKVPYGATLIVKDGLTIKAGTALA 1020 FTATMRYVTNGKGEQIVISRSGEVLITDD GRERERHKVPYGATL V DG +KAG LA Sbjct: 961 FTATMRYVTNGKGEQIVISRSGEVLITDDFGRERERHKVPYGATLAVLDGNQVKAGAMLA 1020 Query: 1021 TWDPLTRPIITEYSGTVKFENVEEGSTVAKQIDEVTGLSTLVVIDAKRRGPSSKVMRPQV 1080 TWDPLTRPI+TEY+G ++FEN+EEG+TVAKQID+VTGLSTLVVIDAKRR SK RPQV Sbjct: 1021 TWDPLTRPIVTEYAGKIRFENIEEGATVAKQIDDVTGLSTLVVIDAKRRTAGSKGERPQV 1080 Query: 1081 KLLNEQGEEVKIAGTEHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRDITGGL 1140 KL++ QG EVKIAG++HSV I F VGALITV+D Q V VGEVLARIP ESQKTRDITGGL Sbjct: 1081 KLIDPQGNEVKIAGSDHSVNISFPVGALITVRDNQDVFVGEVLARIPQESQKTRDITGGL 1140 Query: 1141 PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMEGTKHEFLITKDKQVLVH 1200 PRVAELFEARSPKDAGMLAEVTGTV+FGK+TKGKQRL ITD++G HEFLI KDK VLVH Sbjct: 1141 PRVAELFEARSPKDAGMLAEVTGTVSFGKDTKGKQRLVITDLDGVSHEFLIPKDKHVLVH 1200 Query: 1201 DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ 1260 DGQVVNKGE IVDGPADP DILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ Sbjct: 1201 DGQVVNKGESIVDGPADPHDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ 1260 Query: 1261 MLRRVQVVEPGDTNYITGEQVERSELLDENDRVTAEGKIPATYENVLLGITKASLSTDSF 1320 MLRRV V +PG+T +I GEQVERSELLD ND++ +E K A+Y+N+LLGITKASLSTDSF Sbjct: 1261 MLRRVIVDDPGETGFIPGEQVERSELLDANDKMRSENKREASYQNILLGITKASLSTDSF 1320 Query: 1321 ISAASFQETTRVLTEAAIMGKKDGLRGLKENVIVGRLIPAGTGLAFHRARKEKDAWEAEE 1380 ISAASFQETTRVLTEAAIMGK+D LRGLKENVIVGRLIPAGTG+AFH+ARKEK+ EAEE Sbjct: 1321 ISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAFHKARKEKEGREAEE 1380 Query: 1381 RAALLEAERASRSE 1394 +EAE R++ Sbjct: 1381 LRQ-MEAEHDPRAQ 1393