BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0019.p (196 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773534.1| transcription antitermination protein [Herba... 402 e-110 ref|YP_004751049.1| transcription antitermination protein [Colli... 337 4e-91 emb|CAL63287.2| Transcription antitermination protein NusG [Herm... 334 3e-90 ref|YP_001355115.1| transcription antitermination protein NusG [... 330 8e-89 ref|YP_004028678.1| transcription antitermination protein nusG [... 322 2e-86 ref|YP_003606469.1| NusG antitermination factor [Burkholderia sp... 320 8e-86 ref|ZP_02380172.1| NusG antitermination factor [Burkholderia ubo... 318 3e-85 ref|ZP_03269713.1| NusG antitermination factor [Burkholderia sp.... 318 3e-85 ref|YP_104179.1| transcription antitermination protein NusG [Bur... 318 4e-85 ref|YP_560684.1| transcription antitermination protein NusG [Bur... 317 4e-85 >ref|YP_003773534.1| transcription antitermination protein [Herbaspirillum seropedicae SmR1] gb|ADJ61626.1| transcription antitermination protein [Herbaspirillum seropedicae SmR1] Length = 196 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 196/196 (100%), Positives = 196/196 (100%) Query: 1 MSDSTQDSAPIGAQSVSGAGKKRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVP 60 MSDSTQDSAPIGAQSVSGAGKKRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVP Sbjct: 1 MSDSTQDSAPIGAQSVSGAGKKRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVP 60 Query: 61 TEEVVDMKNGHKSVTERRFFPGYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPP 120 TEEVVDMKNGHKSVTERRFFPGYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPP Sbjct: 61 TEEVVDMKNGHKSVTERRFFPGYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPP 120 Query: 121 HEVDSLLRQMQEGVEKPRPKVLYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIF 180 HEVDSLLRQMQEGVEKPRPKVLYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIF Sbjct: 121 HEVDSLLRQMQEGVEKPRPKVLYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIF 180 Query: 181 GRATPVELEFGQLEKV 196 GRATPVELEFGQLEKV Sbjct: 181 GRATPVELEFGQLEKV 196 >ref|YP_004751049.1| transcription antitermination protein [Collimonas fungivorans Ter331] gb|AEK60226.1| Transcription antitermination protein [Collimonas fungivorans Ter331] Length = 199 Score = 337 bits (865), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 165/199 (82%), Positives = 182/199 (91%), Gaps = 3/199 (1%) Query: 1 MSDSTQDSAP---IGAQSVSGAGKKRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQI 57 MSDSTQD A A + AGKKRWYVVHAYSGMEKSVQRALTERI+RAGMQEQFGQI Sbjct: 1 MSDSTQDDAQGTPAAATPSAAAGKKRWYVVHAYSGMEKSVQRALTERIDRAGMQEQFGQI 60 Query: 58 LVPTEEVVDMKNGHKSVTERRFFPGYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTP 117 LVPTEEV+++KNG K+VTERRFFPGYVLVEMEMTDETWHLVKNT KVTGFIGGKSN+PTP Sbjct: 61 LVPTEEVIEVKNGQKAVTERRFFPGYVLVEMEMTDETWHLVKNTNKVTGFIGGKSNKPTP 120 Query: 118 LPPHEVDSLLRQMQEGVEKPRPKVLYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSV 177 +P HEVD +++QMQ+G+EKPRPKVLYEVGE+VRIKEG FTDFNGNVEEVNYEKSRVRV+V Sbjct: 121 IPQHEVDKIMQQMQDGIEKPRPKVLYEVGELVRIKEGAFTDFNGNVEEVNYEKSRVRVTV 180 Query: 178 TIFGRATPVELEFGQLEKV 196 TIFGRATPVELEF ++EKV Sbjct: 181 TIFGRATPVELEFDKVEKV 199 >emb|CAL63287.2| Transcription antitermination protein NusG [Herminiimonas arsenicoxydans] Length = 192 Score = 334 bits (857), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 158/176 (89%), Positives = 172/176 (97%) Query: 21 KKRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVPTEEVVDMKNGHKSVTERRFF 80 KKRWYVVHAYSGMEKSV RALTERI RAGMQ+QFGQILVPTEEV+++KNG KSV+ERRFF Sbjct: 17 KKRWYVVHAYSGMEKSVMRALTERIARAGMQDQFGQILVPTEEVIEVKNGQKSVSERRFF 76 Query: 81 PGYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPPHEVDSLLRQMQEGVEKPRPK 140 PGYVLVEMEMTDETWHLVKNT+KVTGFIGGKSN+PTP+PPHEVD +++QMQEGVEKPRPK Sbjct: 77 PGYVLVEMEMTDETWHLVKNTSKVTGFIGGKSNKPTPIPPHEVDKIMQQMQEGVEKPRPK 136 Query: 141 VLYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIFGRATPVELEFGQLEKV 196 VLYEVGEMVRIK+GPFTDFNGNVEEVNYEKS+VRVSVTIFGRATPVELEFGQ+EKV Sbjct: 137 VLYEVGEMVRIKDGPFTDFNGNVEEVNYEKSKVRVSVTIFGRATPVELEFGQVEKV 192 >ref|YP_001355115.1| transcription antitermination protein NusG [Janthinobacterium sp. Marseille] gb|ABR88512.1| Transcription antiterminator [Janthinobacterium sp. Marseille] Length = 199 Score = 330 bits (846), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 154/176 (87%), Positives = 171/176 (97%) Query: 21 KKRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVPTEEVVDMKNGHKSVTERRFF 80 KKRWYVVHAYSGMEKSVQRAL ER RAGM+++FGQILVPTEEV+++KNGHKSV+ERRFF Sbjct: 24 KKRWYVVHAYSGMEKSVQRALIERAARAGMEDKFGQILVPTEEVIEVKNGHKSVSERRFF 83 Query: 81 PGYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPPHEVDSLLRQMQEGVEKPRPK 140 PGYVLVEMEMTDETWHLVKNT KVTGFIGGKSN+PTP+PPHEVD +++QMQ+GVEKPRPK Sbjct: 84 PGYVLVEMEMTDETWHLVKNTNKVTGFIGGKSNKPTPIPPHEVDKIMQQMQDGVEKPRPK 143 Query: 141 VLYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIFGRATPVELEFGQLEKV 196 VLYEVGE+VRIK+GPFTDFNGNVEEVNYEKS+VRVSVTIFGRATPVELEFGQ+EKV Sbjct: 144 VLYEVGELVRIKDGPFTDFNGNVEEVNYEKSKVRVSVTIFGRATPVELEFGQVEKV 199 >ref|YP_004028678.1| transcription antitermination protein nusG [Burkholderia rhizoxinica HKI 454] emb|CBW74534.1| Transcription antitermination protein nusG [Burkholderia rhizoxinica HKI 454] Length = 185 Score = 322 bits (825), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 152/184 (82%), Positives = 169/184 (91%) Query: 13 AQSVSGAGKKRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVPTEEVVDMKNGHK 72 + S + +G KRWYVVHAYSGMEKSVQRAL ERI RAGMQ++FGQILVPTEEVV++K GHK Sbjct: 2 SDSAASSGGKRWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEIKGGHK 61 Query: 73 SVTERRFFPGYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPPHEVDSLLRQMQE 132 SVTERRFFPGYVLVEMEMTDETWHLVKNTAKVTGF+GG NRP+P+ EVD ++ QMQE Sbjct: 62 SVTERRFFPGYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISQREVDKIMSQMQE 121 Query: 133 GVEKPRPKVLYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIFGRATPVELEFGQ 192 GVEKPRPK L+EVGE+VR+KEGPFTDFNG+VEEVNYEKSRVRVSVTIFGRATPVELEFGQ Sbjct: 122 GVEKPRPKTLFEVGELVRVKEGPFTDFNGSVEEVNYEKSRVRVSVTIFGRATPVELEFGQ 181 Query: 193 LEKV 196 +EKV Sbjct: 182 VEKV 185 >ref|YP_003606469.1| NusG antitermination factor [Burkholderia sp. CCGE1002] gb|ADG16958.1| NusG antitermination factor [Burkholderia sp. CCGE1002] Length = 185 Score = 320 bits (819), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 152/175 (86%), Positives = 165/175 (94%) Query: 22 KRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVPTEEVVDMKNGHKSVTERRFFP 81 KRWYVVHAYSGMEKSVQRAL ERI RAGMQEQFGQILVPTEEVV++K GHKSVTERRFFP Sbjct: 11 KRWYVVHAYSGMEKSVQRALQERIERAGMQEQFGQILVPTEEVVEVKGGHKSVTERRFFP 70 Query: 82 GYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPPHEVDSLLRQMQEGVEKPRPKV 141 GYVLVEMEMTDETWHLVKNTAKVTGF+GG NRP+P+ P EV+ ++ QMQEGVEKPRPK Sbjct: 71 GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKT 130 Query: 142 LYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIFGRATPVELEFGQLEKV 196 L+EVGEMVR+KEGPFTDFNG+VEEVNYEKSRVRVSVTIFGRATPVELEFGQ+EK+ Sbjct: 131 LFEVGEMVRVKEGPFTDFNGSVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKL 185 >ref|ZP_02380172.1| NusG antitermination factor [Burkholderia ubonensis Bu] ref|ZP_04946846.1| transcription antitermination protein NusG [Burkholderia dolosa AUO158] gb|EAY70017.1| transcription antitermination protein NusG [Burkholderia dolosa AUO158] gb|EGD06581.1| transcription antitermination protein NusG [Burkholderia sp. TJI49] Length = 185 Score = 318 bits (814), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 151/175 (86%), Positives = 164/175 (93%) Query: 22 KRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVPTEEVVDMKNGHKSVTERRFFP 81 KRWYVVHAYSGMEKSVQRAL ERI RAGMQ++FGQILVPTEEVV++K GHK+VTERRFFP Sbjct: 11 KRWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKAVTERRFFP 70 Query: 82 GYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPPHEVDSLLRQMQEGVEKPRPKV 141 GYVLVEMEMTDETWHLVKNTAKVTGF+GG NRPTP+ P EV+ ++ QMQEGVEKPRPK Sbjct: 71 GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPTPISPKEVEKIMSQMQEGVEKPRPKT 130 Query: 142 LYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIFGRATPVELEFGQLEKV 196 L+EVGEMVR+KEGPFTDFNG VEEVNYEKSRVRVSVTIFGRATPVELEFGQ+EKV Sbjct: 131 LFEVGEMVRVKEGPFTDFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 185 >ref|ZP_03269713.1| NusG antitermination factor [Burkholderia sp. H160] gb|EDZ98698.1| NusG antitermination factor [Burkholderia sp. H160] Length = 185 Score = 318 bits (814), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 151/175 (86%), Positives = 164/175 (93%) Query: 22 KRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVPTEEVVDMKNGHKSVTERRFFP 81 KRWYVVHAYSGMEKSVQRAL ERI RAGMQ QFGQILVPTEEVV++K GHKSVTERRFFP Sbjct: 11 KRWYVVHAYSGMEKSVQRALQERIERAGMQNQFGQILVPTEEVVEVKGGHKSVTERRFFP 70 Query: 82 GYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPPHEVDSLLRQMQEGVEKPRPKV 141 GYVLVEMEMTDETWHLVKNTAKVTGF+GG NRP+P+ P EV+ ++ QMQEGVEKPRPK Sbjct: 71 GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKT 130 Query: 142 LYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIFGRATPVELEFGQLEKV 196 L+EVGEMVR+KEGPFTDFNG+VEEVNYEKSRVRVSVTIFGRATPVELEFGQ+EK+ Sbjct: 131 LFEVGEMVRVKEGPFTDFNGSVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKL 185 >ref|YP_104179.1| transcription antitermination protein NusG [Burkholderia mallei ATCC 23344] ref|YP_994470.1| transcription antitermination protein NusG [Burkholderia mallei SAVP1] ref|YP_001027880.1| transcription antitermination protein NusG [Burkholderia mallei NCTC 10229] ref|YP_001082976.1| transcription antitermination protein NusG [Burkholderia mallei NCTC 10247] ref|ZP_00439115.2| transcription termination/antitermination factor NusG [Burkholderia mallei GB8 horse 4] ref|ZP_04881927.1| transcription termination/antitermination factor NusG [Burkholderia mallei ATCC 10399] ref|ZP_04973406.1| transcription termination/antitermination factor NusG [Burkholderia mallei 2002721280] gb|AAU47883.1| transcription antitermination protein NusG [Burkholderia mallei ATCC 23344] gb|ABM50621.1| transcription termination/antitermination factor NusG [Burkholderia mallei SAVP1] gb|ABN02963.1| transcription termination/antitermination factor NusG [Burkholderia mallei NCTC 10229] gb|ABO05263.1| transcription termination/antitermination factor NusG [Burkholderia mallei NCTC 10247] gb|EDK84281.1| transcription termination/antitermination factor NusG [Burkholderia mallei 2002721280] gb|EDP86281.1| transcription termination/antitermination factor NusG [Burkholderia mallei ATCC 10399] gb|EEP84452.1| transcription termination/antitermination factor NusG [Burkholderia mallei GB8 horse 4] Length = 185 Score = 318 bits (814), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 153/182 (84%), Positives = 168/182 (92%), Gaps = 1/182 (0%) Query: 15 SVSGAGKKRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVPTEEVVDMKNGHKSV 74 S S +GK RWYVVHAYSGMEKSVQRAL ERI RAGMQ++FGQILVPTEEVV++K GHK+V Sbjct: 5 SASPSGK-RWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKAV 63 Query: 75 TERRFFPGYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPPHEVDSLLRQMQEGV 134 TERRFFPGYVLVEMEMTDETWHLVKNTAKVTGF+GG NRP+P+ P EV+ ++ QMQEGV Sbjct: 64 TERRFFPGYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGV 123 Query: 135 EKPRPKVLYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIFGRATPVELEFGQLE 194 EKPRPK L+EVGEMVR+KEGPFTDFNG VEEVNYEKSRVRVSVTIFGRATPVELEFGQ+E Sbjct: 124 EKPRPKTLFEVGEMVRVKEGPFTDFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVE 183 Query: 195 KV 196 KV Sbjct: 184 KV 185 >ref|YP_560684.1| transcription antitermination protein NusG [Burkholderia xenovorans LB400] ref|YP_001897271.1| transcription antitermination protein NusG [Burkholderia phytofirmans PsJN] ref|ZP_06846028.1| NusG antitermination factor [Burkholderia sp. Ch1-1] ref|YP_003908492.1| NusG antitermination factor [Burkholderia sp. CCGE1003] ref|YP_004229768.1| NusG antitermination factor [Burkholderia sp. CCGE1001] gb|ABE32632.1| transcription antitermination protein nusG [Burkholderia xenovorans LB400] gb|ACD18047.1| NusG antitermination factor [Burkholderia phytofirmans PsJN] gb|EFG66354.1| NusG antitermination factor [Burkholderia sp. Ch1-1] gb|ADN59201.1| NusG antitermination factor [Burkholderia sp. CCGE1003] gb|ADX56708.1| NusG antitermination factor [Burkholderia sp. CCGE1001] Length = 185 Score = 317 bits (813), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 150/175 (85%), Positives = 165/175 (94%) Query: 22 KRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVPTEEVVDMKNGHKSVTERRFFP 81 KRWYVVHAYSGMEKSVQRAL ERI RAGMQ+QFGQILVPTEEVV++K GHKSVTERRFFP Sbjct: 11 KRWYVVHAYSGMEKSVQRALQERIERAGMQDQFGQILVPTEEVVEVKGGHKSVTERRFFP 70 Query: 82 GYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPPHEVDSLLRQMQEGVEKPRPKV 141 GYVLVEMEMTDETWHLVKNTAKVTGF+GG NRP+P+ P EV+ ++ QMQEGVEKPRPK Sbjct: 71 GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKT 130 Query: 142 LYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIFGRATPVELEFGQLEKV 196 L+EVGEMVR+K+GPFTDFNG+VEEVNYEKSRVRVSVTIFGRATPVELEFGQ+EK+ Sbjct: 131 LFEVGEMVRVKDGPFTDFNGSVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKL 185