BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0004.p (262 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773521.1| membrane protein [Herbaspirillum seropedicae... 527 e-148 ref|YP_004754807.1| hypothetical protein CFU_4162 [Collimonas fu... 341 8e-92 ref|YP_001353493.1| hypothetical protein mma_1803 [Janthinobacte... 281 5e-74 ref|YP_001099904.1| signal peptide [Herminiimonas arsenicoxydans... 261 6e-68 ref|ZP_08275436.1| hypothetical protein IMCC9480_368 [Oxalobacte... 259 3e-67 ref|YP_004751974.1| hypothetical protein CFU_1319 [Collimonas fu... 246 2e-63 ref|YP_001351858.1| hypothetical protein mma_0168 [Janthinobacte... 184 2e-44 ref|ZP_06686189.1| conserved hypothetical protein [Achromobacter... 175 5e-42 gb|EGP45450.1| hypothetical protein AXXA_16142 [Achromobacter xy... 171 9e-41 gb|EFV82791.1| exported protein [Achromobacter xylosoxidans C54] 170 2e-40 >ref|YP_003773521.1| membrane protein [Herbaspirillum seropedicae SmR1] gb|AAZ43074.1| probable membrane protein precursor [Herbaspirillum seropedicae SmR1] gb|ADJ61613.1| membrane protein [Herbaspirillum seropedicae SmR1] Length = 262 Score = 527 bits (1358), Expect = e-148, Method: Compositional matrix adjust. Identities = 262/262 (100%), Positives = 262/262 (100%) Query: 1 MKKLILATAIAASFVSTVARAEDAKPDNEFSFNAAVVSDYRYRGLTQTRFDPALQVGADY 60 MKKLILATAIAASFVSTVARAEDAKPDNEFSFNAAVVSDYRYRGLTQTRFDPALQVGADY Sbjct: 1 MKKLILATAIAASFVSTVARAEDAKPDNEFSFNAAVVSDYRYRGLTQTRFDPALQVGADY 60 Query: 61 THNPTGLYAGTWLTNIKWIKDAGAVASPPVNTKGDIEWDIYGGKRGDIGGGFTYDVGGLY 120 THNPTGLYAGTWLTNIKWIKDAGAVASPPVNTKGDIEWDIYGGKRGDIGGGFTYDVGGLY Sbjct: 61 THNPTGLYAGTWLTNIKWIKDAGAVASPPVNTKGDIEWDIYGGKRGDIGGGFTYDVGGLY 120 Query: 121 YYYPGNTLADSGAKNANTFELYGQVGYGPGYFKYSQSLTNLFGAANSKYSQYFDLGANIE 180 YYYPGNTLADSGAKNANTFELYGQVGYGPGYFKYSQSLTNLFGAANSKYSQYFDLGANIE Sbjct: 121 YYYPGNTLADSGAKNANTFELYGQVGYGPGYFKYSQSLTNLFGAANSKYSQYFDLGANIE 180 Query: 181 TYYGVILGLHVGHQNVRGNPNQFSYTDWKIGVSKTFDDLAGITLGLAYVGTDLKDGVTTT 240 TYYGVILGLHVGHQNVRGNPNQFSYTDWKIGVSKTFDDLAGITLGLAYVGTDLKDGVTTT Sbjct: 181 TYYGVILGLHVGHQNVRGNPNQFSYTDWKIGVSKTFDDLAGITLGLAYVGTDLKDGVTTT 240 Query: 241 PASDGLKNVGKNGFVFSLSKTF 262 PASDGLKNVGKNGFVFSLSKTF Sbjct: 241 PASDGLKNVGKNGFVFSLSKTF 262 >ref|YP_004754807.1| hypothetical protein CFU_4162 [Collimonas fungivorans Ter331] gb|AEK63984.1| conserved hypothetical protein, signal peptide [Collimonas fungivorans Ter331] Length = 257 Score = 341 bits (874), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 173/262 (66%), Positives = 206/262 (78%), Gaps = 5/262 (1%) Query: 1 MKKLILATAIAASFVSTVARAEDAKPDNEFSFNAAVVSDYRYRGLTQTRFDPALQVGADY 60 MKKLILA IAASF + +A AEDAKPDNE S+N V+DYR+RG++QTR DPA+Q GADY Sbjct: 1 MKKLILAATIAASFSAGLAHAEDAKPDNEISYNIGAVNDYRFRGISQTRLDPAIQGGADY 60 Query: 61 THNPTGLYAGTWLTNIKWIKDAGAVASPPVNTKGDIEWDIYGGKRGDIGGGFTYDVGGLY 120 T+NPTGLYAGTWL+NIKWIKDA A+ KG IEWDIY GKRG++ GGFTYDVGGLY Sbjct: 61 TNNPTGLYAGTWLSNIKWIKDAVDTANTGTGGKGSIEWDIYAGKRGELPGGFTYDVGGLY 120 Query: 121 YYYPGNTLADSGAKNANTFELYGQVGYGPGYFKYSQSLTNLFGAANSKYSQYFDLGANIE 180 YYYP N + G +NANTFELYGQ+GYGP YFKYS +LTNLFG +SK S Y+D GANI+ Sbjct: 121 YYYPTNNYSQIG-RNANTFELYGQLGYGPAYFKYSHALTNLFGTVDSKGSAYYDAGANID 179 Query: 181 TYYGVILGLHVGHQNVRGNPNQFSYTDWKIGVSKTFDDLAGITLGLAYVGTDLKDGVTTT 240 GV LGLHVGHQ V + + +SYTDWKIG +KTF+ LAG+TLGLAYVGT+ KD + Sbjct: 180 VGAGVTLGLHVGHQTVE-HASFYSYTDWKIGATKTFEQLAGVTLGLAYVGTNAKDNAYVS 238 Query: 241 PASDGLKNVGKNGFVFSLSKTF 262 P G KN+G++G VFS++KTF Sbjct: 239 P---GGKNLGRDGVVFSVAKTF 257 >ref|YP_001353493.1| hypothetical protein mma_1803 [Janthinobacterium sp. Marseille] gb|ABR91138.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 269 Score = 281 bits (720), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 147/267 (55%), Positives = 182/267 (68%), Gaps = 22/267 (8%) Query: 1 MKKLILATAIAASFVSTVARAEDAKPDNEFSFNAAVVSDYRYRGLTQTRFDPALQVGADY 60 MK+LIL AIAA+F +++A AED+KPDNE SFNAAVVSDYRYRG++QTR PALQ GADY Sbjct: 20 MKQLILVVAIAAAFTASIAHAEDSKPDNEISFNAAVVSDYRYRGISQTRLQPALQGGADY 79 Query: 61 THNPTGLYAGTWLTNIKWIKDAGAVASPPVNTKGDIEWDIYGGKRGDIGGGFTYDVGGLY 120 HNP+G YAGTWL+ IKW+KD G GD+E D+YGGKRG++G TYD+G L Sbjct: 80 VHNPSGFYAGTWLSTIKWVKDGGG--------SGDVEVDVYGGKRGELGKNVTYDLGVLT 131 Query: 121 YYYPGNTLADSGAKNANTFELYGQVGYGPGYFKYSQSLTNLFGAANSKYSQYFDLGANIE 180 Y YP N L NANT E+YGQ+GYGP Y KYS S+TNLFG +SK S Y D+GAN++ Sbjct: 132 YVYPSNGL----NPNANTTEVYGQLGYGPAYIKYSHSVTNLFGFVDSKNSGYLDIGANLD 187 Query: 181 TYYGVILGLHVGHQNVRGN-----PNQFSYTDWKIGVSKTFDDLAGITLGLAYVGTDLKD 235 G IL LH GHQ V G+ ++ SYTDWK+GVSK F G LAY+GTD Sbjct: 188 ISNGYILNLHAGHQKVAGDNAGVSNDRLSYTDWKVGVSKDFGLFTG---ALAYIGTDADK 244 Query: 236 GVTTTPASDGLKNVGKNGFVFSLSKTF 262 +P + K +GK+ + ++SKTF Sbjct: 245 SAYASPVNG--KFMGKDALILTISKTF 269 >ref|YP_001099904.1| signal peptide [Herminiimonas arsenicoxydans] emb|CAL61779.1| conserved hypothetical protein; putative exported protein [Herminiimonas arsenicoxydans] Length = 250 Score = 261 bits (668), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 143/267 (53%), Positives = 174/267 (65%), Gaps = 22/267 (8%) Query: 1 MKKLILATAIAASFVSTVARAEDAKPDNEFSFNAAVVSDYRYRGLTQTRFDPALQVGADY 60 MKKLILA AI F +A AE+ KP+ E SFNAAV SDYRYRG++QTR ALQ GADY Sbjct: 1 MKKLILAAAITTVFAGNLAHAEEQKPEQEVSFNAAVTSDYRYRGISQTRLQAALQGGADY 60 Query: 61 THNPTGLYAGTWLTNIKWIKDAGAVASPPVNTKGDIEWDIYGGKRGDIGGGFTYDVGGLY 120 HNP+G YAGTWL+ +K++KDAG GD+E DIYGGKRG I +YDVG L Sbjct: 61 VHNPSGFYAGTWLSTLKFVKDAGG--------NGDVEVDIYGGKRGAITSDVSYDVGALS 112 Query: 121 YYYPGNTLADSGAKNANTFELYGQVGYGPGYFKYSQSLTNLFGAANSKYSQYFDLGANIE 180 Y YP N L S NT E+YGQ+GYGP Y KYS S+TNLFG +SK S Y D+GAN++ Sbjct: 113 YVYPSNGLNPS----TNTTEIYGQLGYGPAYIKYSHSVTNLFGYLDSKNSAYLDIGANLD 168 Query: 181 TYYGVILGLHVGHQNVRG-----NPNQFSYTDWKIGVSKTFDDLAGITLGLAYVGTDLKD 235 G IL LH GHQ V G + ++F+YTDWK+GV+K F + G LA VGTD Sbjct: 169 LVDGYILNLHAGHQKVSGTNGGVSNSRFNYTDWKVGVTKDFGIVTG---ALAVVGTDADK 225 Query: 236 GVTTTPASDGLKNVGKNGFVFSLSKTF 262 +PA+ K +GK G V ++SKTF Sbjct: 226 SAYASPAN--AKFMGKTGLVLTVSKTF 250 >ref|ZP_08275436.1| hypothetical protein IMCC9480_368 [Oxalobacteraceae bacterium IMCC9480] gb|EGF31101.1| hypothetical protein IMCC9480_368 [Oxalobacteraceae bacterium IMCC9480] Length = 229 Score = 259 bits (661), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 141/244 (57%), Positives = 169/244 (69%), Gaps = 19/244 (7%) Query: 19 ARAEDAKPDNEFSFNAAVVSDYRYRGLTQTRFDPALQVGADYTHNPTGLYAGTWLTNIKW 78 A AEDAKPDNE SFNAA+ SDYRYRG++Q+R PA+ GAD+ +NPTG Y GTW ++IKW Sbjct: 5 AHAEDAKPDNELSFNAALSSDYRYRGISQSRLKPAISAGADFVNNPTGFYVGTWASSIKW 64 Query: 79 IKDAGAVASPPVNTKGDIEWDIYGGKRGDIGGGFTYDVGGLYYYYPGNTLADSGAKNANT 138 IKDAG KGDIE DIYGGKRG+I +YDVG L Y YP N L S ANT Sbjct: 65 IKDAGG--------KGDIELDIYGGKRGEIVKDVSYDVGVLTYVYPSNNLGTS----ANT 112 Query: 139 FELYGQVGYGPGYFKYSQSLTNLFGAANSKYSQYFDLGANIETYYGVILGLHVGHQNVRG 198 E+YGQVGYGPGY KYS S+TNLFG A+SK S Y D+GANI+ G +L LHVGHQ+V+ Sbjct: 113 TEIYGQVGYGPGYVKYSHSVTNLFGFADSKNSGYLDIGANIDVAEGTVLNLHVGHQSVKN 172 Query: 199 NPNQFSYTDWKIGVSKTFDDLAGITLGLAYVGTDLKDGVTTTPASDGLKNVGKNGFVFSL 258 N SYTD+K+GV+K F L+G LA +GTD K G TP+ K+ GK V ++ Sbjct: 173 NSYS-SYTDYKVGVTKDFGFLSG---SLAVIGTDAKTGAYPTPSG---KDNGKTALVVAI 225 Query: 259 SKTF 262 SKTF Sbjct: 226 SKTF 229 >ref|YP_004751974.1| hypothetical protein CFU_1319 [Collimonas fungivorans Ter331] gb|AEK61151.1| conserved hypothetical protein, signal peptide [Collimonas fungivorans Ter331] Length = 254 Score = 246 bits (629), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 136/267 (50%), Positives = 176/267 (65%), Gaps = 24/267 (8%) Query: 1 MKKLI-----LATAIAASFVSTVARAEDAKPDNEFSFNAAVVSDYRYRGLTQTRFDPALQ 55 MKK+I L+ +F + ++AE+A PDN +FNA++VSDYR+RG++QTR PALQ Sbjct: 7 MKKIIYFAGLLSVIGITAFTANCSQAEEAVPDNSLTFNASLVSDYRFRGISQTRLKPALQ 66 Query: 56 VGADYTHNPTGLYAGTWLTNIKWIKDAGAVASPPVNTKGDIEWDIYGGKRGDIGGGFTYD 115 GADY++NPTGLY GTWL+ +KW+KD+G G+IEWD+Y GK+G+ +YD Sbjct: 67 GGADYSNNPTGLYVGTWLSTLKWVKDSGG--------DGNIEWDVYAGKKGNFTQDLSYD 118 Query: 116 VGGLYYYYPGNTLADSGAKNANTFELYGQVGYGPGYFKYSQSLTNLFGAANSKYSQYFDL 175 G L Y YP N L +ANT ELYGQ+GYGP Y KYSQSLT+LFGA NSK S Y D+ Sbjct: 119 FGVLTYIYPSNDL----HPDANTTELYGQLGYGPAYIKYSQSLTDLFGAVNSKNSGYLDI 174 Query: 176 GANIETYYGVILGLHVGHQNVRGNPNQFSYTDWKIGVSKTFDDLAGITLGLAYVGTDLKD 235 GANI+ G + LH GHQ V+ N + SY DWKIG++K F L+G +A +GTD + Sbjct: 175 GANIDVSNGYTVNLHGGHQTVKNN-SALSYNDWKIGLTKDFGFLSG---SVAVIGTDTNN 230 Query: 236 GVTTTPASDGLKNVGKNGFVFSLSKTF 262 V PA D KN+GK V S +KTF Sbjct: 231 YV--GPAPD-RKNLGKTALVVSATKTF 254 >ref|YP_001351858.1| hypothetical protein mma_0168 [Janthinobacterium sp. Marseille] gb|ABR91209.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 246 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 114/263 (43%), Positives = 154/263 (58%), Gaps = 18/263 (6%) Query: 1 MKKLILATAIAASFVSTVARAEDAKPDNEFSFNAAVVSDYRYRGLTQTRFDPALQVGADY 60 MKKLI+A A+ +F ++A AED P++ F+ N +VVSDYR+RG++QT PA+Q G DY Sbjct: 1 MKKLIIAVAVMGAFAGSLAHAEDVIPEHSFTGNLSVVSDYRFRGISQTFKQPAVQGGFDY 60 Query: 61 THNPTGLYAGTWLTNIKWIKDAGAVASPPVNTKGDIEWDIYGGKRGDIGGGFTYDVGGLY 120 H+ +G Y G W +N+ S T G IE D+YGG + +I T DVG LY Sbjct: 61 AHS-SGFYVGNWNSNV----------SGNSFTDGSIEMDLYGGYKFNITPDVTADVGVLY 109 Query: 121 YYYPGNTLADSGAKNANTFELYGQVGYGPGYFKYSQSLTNLFGAANSKYSQYFDLGANIE 180 YYYPG + G K NT ELYG +GY KYS ++++ FGA +S S Y +L AN E Sbjct: 110 YYYPGAQIL--GGKKYNTTELYGSIGYKWFTLKYSNAVSDFFGAPDSNGSDYIELNANFE 167 Query: 181 TYYGVILGLHVGHQNVRGNPNQFSYTDWKIGVSKTFDDLAGITLGLAYVGTDLKDGV-TT 239 LG HVGHQ V+ N + SYTD+K+ +++ D T+GLA VGTD G + Sbjct: 168 VMDKTTLGFHVGHQKVK-NVDNASYTDYKLSLAR---DFGFATIGLAVVGTDADKGFYSL 223 Query: 240 TPASDGLKNVGKNGFVFSLSKTF 262 T A+ K +G V S+SK F Sbjct: 224 TNAAGKTKKLGDTTAVLSISKAF 246 >ref|ZP_06686189.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gb|EFF76905.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 273 Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 107/249 (42%), Positives = 149/249 (59%), Gaps = 16/249 (6%) Query: 15 VSTVARAEDAKPDNEFSFNAAVVSDYRYRGLTQTRFDPALQVGADYTHNPTGLYAGTWLT 74 ++ A + A D + N + S YRYRGL Q+ PA+Q G D H +G Y G W + Sbjct: 40 LTPAAESTTAASDFTLTANVTLASQYRYRGLMQSNNRPAIQGGVDLVH-ASGFYLGNWNS 98 Query: 75 NIKWIKDAGAVASPPVNTKGDIEWDIYGGKRGDIGGGFTYDVGGLYYYYPGNTLADSGAK 134 +I W+ D+ + S P IE D YGG +G++ G D+G L YYYPG+ SG Sbjct: 99 SISWLGDSNSAVSAP------IEMDFYGGYKGELAPGVPVDLGVLQYYYPGDY--PSGYT 150 Query: 135 NANTFELYGQVGYGPGYFKYSQSLTNLFGAANSKYSQYFDLGANIET-YYGVILGLHVGH 193 + +T ELY +GYGP FKYS +LTNLFG A+SKYSQY DLGAN +T +G+ L HVG Sbjct: 151 SPDTTELYAGIGYGPVTFKYSIALTNLFGFADSKYSQYLDLGANFDTGLWGLTLNAHVGR 210 Query: 194 QNVRGNPNQFSYTDWKIGVSKTFDDLAGITLGLAYVGTDLKDGVTTTPASDGLKNVGKNG 253 Q VR N + SYTDWK+GV++ D G+++ LAY+ T+ + V T +++G+ Sbjct: 211 QIVR-NVDNGSYTDWKLGVTR--DMGQGLSVSLAYLDTNADNAVYTNTHG---RDLGRAT 264 Query: 254 FVFSLSKTF 262 + SL+KTF Sbjct: 265 ALLSLTKTF 273 >gb|EGP45450.1| hypothetical protein AXXA_16142 [Achromobacter xylosoxidans AXX-A] Length = 253 Score = 171 bits (433), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 102/241 (42%), Positives = 144/241 (59%), Gaps = 16/241 (6%) Query: 23 DAKPDNEFSFNAAVVSDYRYRGLTQTRFDPALQVGADYTHNPTGLYAGTWLTNIKWIKDA 82 + P+ + N + S YRYRGL QT PA+Q G D+TH +GLY G W ++I W+ D Sbjct: 28 EPAPEYSLTANVTLASQYRYRGLMQTNNQPAIQGGFDFTH-ASGLYLGNWNSSISWLNDG 86 Query: 83 GAVASPPVNTKGDIEWDIYGGKRGDIGGGFTYDVGGLYYYYPGNTLADSGAKNANTFELY 142 + S PV E D YGG +G++ +D+G L YYYPG+ SG + +T ELY Sbjct: 87 NSKVSAPV------EMDFYGGYKGNLAPNVPFDLGVLQYYYPGD--YPSGYTSPDTTELY 138 Query: 143 GQVGYGPGYFKYSQSLTNLFGAANSKYSQYFDLGANIET-YYGVILGLHVGHQNVRGNPN 201 +GYGP FKYS ++TNLFG A+SKYSQYFDL N +T ++G+ + HVG Q VR N Sbjct: 139 AGLGYGPVLFKYSIAMTNLFGFADSKYSQYFDLSGNFDTGFWGLTVNAHVGRQTVR-NVT 197 Query: 202 QFSYTDWKIGVSKTFDDLAGITLGLAYVGTDLKDGVTTTPASDGLKNVGKNGFVFSLSKT 261 +YTDWK+G++K F G+ + +AY+ T+ V T + +G+ + SL+KT Sbjct: 198 DGAYTDWKLGLTKDFGQ--GLAVSIAYIDTNADRAVYTNSRG---RYMGRATGLLSLTKT 252 Query: 262 F 262 F Sbjct: 253 F 253 >gb|EFV82791.1| exported protein [Achromobacter xylosoxidans C54] Length = 251 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 102/238 (42%), Positives = 143/238 (60%), Gaps = 16/238 (6%) Query: 26 PDNEFSFNAAVVSDYRYRGLTQTRFDPALQVGADYTHNPTGLYAGTWLTNIKWIKDAGAV 85 P+ + N + S YRYRGL QT PA+Q G D+TH +GLY G W +++ W+ D + Sbjct: 29 PEYTLTANVTLASQYRYRGLMQTNNKPAIQGGFDFTH-ASGLYLGNWNSSVSWLNDGNSD 87 Query: 86 ASPPVNTKGDIEWDIYGGKRGDIGGGFTYDVGGLYYYYPGNTLADSGAKNANTFELYGQV 145 S PV E D YGG +G++ +D+G L YYYPG+ SG + +T ELY V Sbjct: 88 VSAPV------EMDFYGGYKGNLAPDVPFDLGVLQYYYPGD--YPSGYTSPDTTELYAGV 139 Query: 146 GYGPGYFKYSQSLTNLFGAANSKYSQYFDLGANIET-YYGVILGLHVGHQNVRGNPNQFS 204 GYGP FKYS ++TNLFG A+SKYSQYFDL N +T ++G+ + HVG Q VR N + Sbjct: 140 GYGPVMFKYSVAMTNLFGFADSKYSQYFDLSGNFDTGFWGLTVNAHVGRQTVR-NLTDGA 198 Query: 205 YTDWKIGVSKTFDDLAGITLGLAYVGTDLKDGVTTTPASDGLKNVGKNGFVFSLSKTF 262 YTDWK+G++K F G+ + +AY+ T+ V T + +G+ + SL+KTF Sbjct: 199 YTDWKLGLTKDFGQ--GLAISVAYIDTNADRAVYTNSRG---RYMGRATGLLSLTKTF 251