BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0541.p (431 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBJ36240.1| putative integrase, catalytic region [Ralstonia ... 477 e-132 ref|ZP_03264744.1| hypothetical protein BH160DRAFT_1021 [Burkhol... 474 e-131 ref|YP_002353715.1| hypothetical protein Tmz1t_0016 [Thauera sp.... 177 4e-42 emb|CCA88273.1| hypothetical protein RALSY_30003 [Ralstonia syzy... 170 4e-40 ref|YP_001117874.1| hypothetical protein Bcep1808_0012 [Burkhold... 155 2e-35 >emb|CBJ36240.1| putative integrase, catalytic region [Ralstonia solanacearum CMR15] Length = 668 Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust. Identities = 231/417 (55%), Positives = 295/417 (70%), Gaps = 5/417 (1%) Query: 3 SLRLHDRLVDPRSQEVYLEVLDVQLHGGCVKVFDSAQKTDRYIELAAIAEDIHVGTLMVL 62 +L LHDRL P++ YLEVLD Q GGC+KVFD++ + DRYIE+A++ DIH G L VL Sbjct: 4 TLLLHDRLAPPKNHSAYLEVLDPQPRGGCLKVFDASGRKDRYIEIASLVADIHAGKLTVL 63 Query: 63 RKGKPRHSHAEQYNDDHLHQKDHFVRGILYAIQDRQSQDGVSFLRAYRHVEQAYKNKKVD 122 R GKPR SHA Q D LH+++ FV ++ + D + + G+SF +AY+ V + Y+ + Sbjct: 64 RTGKPRFSHAAQPEDLALHERNRFVHTVMRRVDDMRLRQGISFRQAYQRVAEEYRQEATP 123 Query: 123 PTFPFPSQAAIYRYHQADIAGLPILRGDKNKGNRSSRYSSEVIDTILQIASEHYLQPHSR 182 + PFP Q+ +YRY + D AGLP LRG+KNKGNRS RY EV D I +A +HYL P SR Sbjct: 124 QSLPFPPQSTMYRYRKCDRAGLPALRGNKNKGNRSPRYPQEVDDMIRMVAEQHYLLPQSR 183 Query: 183 WTLIKIAASVNRRVQGIYLPPGHPPISPKYVKAVITRHACTDPEATRMLPKDAIAGKSIA 242 W+L ++ VN +V G +LP PPIS KYV+ I R A +DPE RMLP DA+AGKS A Sbjct: 184 WSLKRVTDDVNLKVHGTFLPTTCPPISTKYVRDTILRLASSDPEHDRMLPADAVAGKSFA 243 Query: 243 KKRIRAEQPLERVEQDALHLPFVVRTPNGVTSEVYLVLAIDCCTGFPLGWRLVVGTPTDT 302 KKRIRAE P ERVEQDALHLPFVV TP+GVTS+VYLV AIDCCT +PLGWRLVVG PT Sbjct: 244 KKRIRAEAPFERVEQDALHLPFVVETPSGVTSQVYLVHAIDCCTSYPLGWRLVVGAPT-- 301 Query: 303 DTLACIEMYMSPVAREHGFMRLGLTHKVSLYGTPGQIIFDNGPENRSGRILRLQRIGSDV 362 A + + ++ F L + H +++ GTPGQ+IFDNG E + R+ +L+R+G DV Sbjct: 302 ---ARMRRDVHGPLKKKRFEELAIDHAMNVCGTPGQLIFDNGAETKGARVQKLERLGVDV 358 Query: 363 QYCKSRAGQEKPFVERTNRSIKEDLEVLPGCTRLDGVDGKRDPVSLGEDLMDLEELE 419 + CK+RAGQEKPF+ER NRS KE E L GCTR+DG DG+RDP++LG+ L LEELE Sbjct: 359 KNCKARAGQEKPFIERLNRSFKEAAEGLAGCTRVDGKDGQRDPIALGDKLPTLEELE 415 >ref|ZP_03264744.1| hypothetical protein BH160DRAFT_1021 [Burkholderia sp. H160] gb|EEA03724.1| hypothetical protein BH160DRAFT_1021 [Burkholderia sp. H160] Length = 678 Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust. Identities = 231/419 (55%), Positives = 292/419 (69%), Gaps = 1/419 (0%) Query: 1 MHSLRLHDRLVDPRSQEVYLEVLDVQLHGGCVKVFDSAQKTDRYIELAAIAEDIHVGTLM 60 M +L HDRLV P + + YLEV+D G +KVFD+ + DRYI++A++ D+H GTL Sbjct: 2 MRALLRHDRLVPPGNPDAYLEVIDPSPRAGSIKVFDAQLRADRYIDMASVVADVHKGTLS 61 Query: 61 VLRKGKPRHSHAEQYNDDHLHQKDHFVRGILYAIQDRQSQDGVSFLRAYRHVEQAYKNKK 120 VLR GKPR SHA Q +D+ LH++ F+R + IQ Q Q GVSF +AYR V + Y Sbjct: 62 VLRAGKPRFSHAAQPDDETLHERSSFIREAMQRIQAVQKQRGVSFQQAYRLVAEQYSQVG 121 Query: 121 VDPTFPFPSQAAIYRYHQADIAGLPILRGDKNKGNRSSRYSSEVIDTILQIASEHYLQPH 180 P P Q+ +YRY +A +AGLP LRG+KNKGNR RYS EVIDTI A YL PH Sbjct: 122 FSQARPLPPQSTMYRYRKALVAGLPPLRGNKNKGNREPRYSQEVIDTIRTAAELLYLVPH 181 Query: 181 SRWTLIKIAASVNRRVQGIYLPPGHPPISPKYVKAVITRHACTDPEATRMLPKDAIAGKS 240 SRW+L ++ VN +V G LP P I+ +YVK I R A DPE RMLP D +AGKS Sbjct: 182 SRWSLKRVTNDVNLKVHGTLLPETRPQITARYVKNTILRVASADPELDRMLPSDVVAGKS 241 Query: 241 IAKKRIRAEQPLERVEQDALHLPFVVRTPNGVTSEVYLVLAIDCCTGFPLGWRLVVGTPT 300 +AK RIRAE P ERVEQDA+HLPFVV TP+G++S+VYLV A+DCCT PLGW L VG PT Sbjct: 242 LAKNRIRAEVPFERVEQDAVHLPFVVETPSGISSQVYLVHAVDCCTSVPLGWNLCVGAPT 301 Query: 301 DTDTLACIEMYMSPVAREHGFMRLGLTHKVSLYGTPGQIIFDNGPENRSGRILRLQRIGS 360 D +TLAC+EMY +P E F LGL +++ GT GQI+FDNG E ++ RI LQ++G+ Sbjct: 302 DRETLACVEMYTAPRKLER-FKALGLDLDMNMCGTAGQIVFDNGAETKTSRIQNLQKLGT 360 Query: 361 DVQYCKSRAGQEKPFVERTNRSIKEDLEVLPGCTRLDGVDGKRDPVSLGEDLMDLEELE 419 DV++C++RA EKPF+ER NRS+KE LE L GCTRLDG DGKRDP+ LG++L +E LE Sbjct: 361 DVKHCRARAAHEKPFIERLNRSLKEALEGLGGCTRLDGKDGKRDPIQLGDELPTMEVLE 419 >ref|YP_002353715.1| hypothetical protein Tmz1t_0016 [Thauera sp. MZ1T] gb|ACK52819.1| hypothetical protein Tmz1t_0016 [Thauera sp. MZ1T] Length = 662 Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 105/299 (35%), Positives = 160/299 (53%), Gaps = 6/299 (2%) Query: 123 PTFPFPSQAAIYRYHQADIAGLPILRGDKNKGNRSSRYSSEVIDTILQIASEHYLQPHSR 182 P P + A A + L ++ +GNR R+S +V + + + E Y + HSR Sbjct: 121 PVPPISERQAYRLIDAASSSPLELMPAHAERGNRLPRHSKDVEELVRHLIEEEYAKVHSR 180 Query: 183 WTLIKIA--ASVNRRVQGIYLPPGHPPISPKYVKAVITRHACTDPEATRMLPKDAIAGKS 240 T+ K++ A+ R +G+ IS YV+ + D + R+ P+ A + K+ Sbjct: 181 ITMRKLSELATTLAREKGLIATSRR--ISRAYVRDFFIKRYHGDIDHKRIDPRIARSKKA 238 Query: 241 IAKKRIRAEQPLERVEQDALHLPFVVRTPNGVTSEVYLVLAIDCCTGFPLGWRLVVGTPT 300 +AK+RIR + L+RVEQD LPF+V T G YL ++IDC TG PLGW L T Sbjct: 239 VAKERIRVDAALQRVEQDTNSLPFIVMTSEGPLKNPYLTVSIDCGTGVPLGWHLSKTPVT 298 Query: 301 DTDTLACIEMYMSPVAREHGFMRLGLTHKVSLYGTPGQIIFDNGPENRSGRILRLQRIGS 360 + +TL C+E + ++ F +L + + YG + DNGPEN+ RI R+ IG Sbjct: 299 EEETLDCLERSL--YSKAERFSQLSIDCSIDPYGLFANLYLDNGPENKGRRITRITEIGI 356 Query: 361 DVQYCKSRAGQEKPFVERTNRSIKEDLEVLPGCTRLDGVDGKRDPVSLGEDLMDLEELE 419 + + +G +KP++ER S+K LE LPGCTR DG DG R ++ +DL+ L+ELE Sbjct: 357 FLTRVAANSGHQKPYIERFFGSLKPALEALPGCTRFDGKDGARTDEAMKDDLLTLDELE 415 >emb|CCA88273.1| hypothetical protein RALSY_30003 [Ralstonia syzygii R24] Length = 135 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 75/117 (64%), Positives = 98/117 (83%), Gaps = 1/117 (0%) Query: 272 VTSEVYLVLAIDCCTGFPLGWRLVVGTPTDTDTLACIEMYMSPVAREHGFMRLGLTHKVS 331 +TS+VYLV AIDCCT +PLGWRLVVG PTDT++LAC+EMYM+P+ ++ F LG+ H ++ Sbjct: 1 MTSQVYLVHAIDCCTSYPLGWRLVVGAPTDTESLACVEMYMAPLKKKR-FEELGIDHAMN 59 Query: 332 LYGTPGQIIFDNGPENRSGRILRLQRIGSDVQYCKSRAGQEKPFVERTNRSIKEDLE 388 + GTPGQ+IFDNG E R GRI LQR+G DV++C++RAGQEKPF+ER NRS+KE +E Sbjct: 60 VCGTPGQLIFDNGAEARGGRIQNLQRLGVDVKHCRARAGQEKPFIERLNRSLKEAME 116 >ref|YP_001117874.1| hypothetical protein Bcep1808_0012 [Burkholderia vietnamiensis G4] gb|ABO53039.1| hypothetical protein Bcep1808_0012 [Burkholderia vietnamiensis G4] Length = 248 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 94/248 (37%), Positives = 135/248 (54%), Gaps = 2/248 (0%) Query: 1 MHSLRLHDRLVDPRSQEVYLEVLDVQLHGGCVKVFDSAQKTDRYIELAAIAEDIHVGTLM 60 M LR D+L P + Y EV+D +LH G +++FD + Y++ I I G L+ Sbjct: 1 MSDLRAGDKLALPGKADSYFEVIDGRLHAGAIQLFDVEKSEALYVKYDDIRAQISEGRLV 60 Query: 61 VLRKGKPRHSHAEQYNDDHLHQKDHFVRGILYAIQDRQSQDGVSFLRAYRHVEQAYKNKK 120 + RKG PR S A QY++ LH K + L I + Q G+SF A +AY + Sbjct: 61 LHRKGMPRVSIAAQYDNPELHGKVCLLNDTLRRIDAIRDQRGLSFNAAIPLAREAYLMEN 120 Query: 121 VD-PTFPFPSQAAIYRYHQADIAGLPILRGDKNKGNRSSRYSSEVIDTILQIASEHYLQP 179 D P FPS+A +YR H + GLP+L+GDKNKGN ++RYS ++I+ + ++ +L Sbjct: 121 GDKPVRSFPSRATLYRAHCNQLLGLPVLKGDKNKGNATARYSKDLIEFVEEVIQNEFLVT 180 Query: 180 HSRWTLIKIAASVNRRVQGIYLPPGHPPISPKYVKAVITRHACTDPEATRMLPKDAIAGK 239 S+WT++ + VNR + L IS K+V A I R D + RM P +AGK Sbjct: 181 DSKWTVLDVTRYVNREGRRRGLHVAKHAISRKFVCAAI-RGLTVDAQYDRMGPLTRVAGK 239 Query: 240 SIAKKRIR 247 S AKKRIR Sbjct: 240 SFAKKRIR 247