BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0538.p (832 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773441.1| DNA gyrase subunit B [Herbaspirillum seroped... 1716 0.0 emb|CAM32658.1| DNA gyrase subunit B, type II topoisomerase, ATP... 1713 0.0 ref|YP_004750665.1| DNA gyrase subunit B [Collimonas fungivorans... 1419 0.0 ref|YP_001351693.1| DNA gyrase subunit B [Janthinobacterium sp. ... 1386 0.0 ref|YP_001098373.1| DNA gyrase subunit B [Herminiimonas arsenico... 1368 0.0 ref|ZP_04577637.1| DNA gyrase subunit B [Oxalobacter formigenes ... 1261 0.0 ref|ZP_04579796.1| DNA gyrase subunit B [Oxalobacter formigenes ... 1261 0.0 emb|CCA88284.1| DNA gyrase, subunit B (type II topoisomerase) [R... 1234 0.0 emb|CCA80877.1| DNA gyrase, subunit B (type II topoisomerase) [b... 1233 0.0 ref|YP_003750712.1| DNA gyrase, subunit B (type II topoisomerase... 1232 0.0 >ref|YP_003773441.1| DNA gyrase subunit B [Herbaspirillum seropedicae SmR1] gb|ADJ61533.1| DNA gyrase subunit B protein [Herbaspirillum seropedicae SmR1] Length = 832 Score = 1716 bits (4445), Expect = 0.0, Method: Compositional matrix adjust. Identities = 831/832 (99%), Positives = 831/832 (99%) Query: 1 MSTSPADNTNSAQQSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID 60 MSTSPADNTNSAQQSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID Sbjct: 1 MSTSPADNTNSAQQSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID 60 Query: 61 EALAGYCSEIHVTIHADNSISITDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFD 120 EALAGYCSEIHVTIHADNSISITDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFD Sbjct: 61 EALAGYCSEIHVTIHADNSISITDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFD 120 Query: 121 QNSYKVSGGLHGVGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGVQVSP 180 QNSYKVSGGLHGVGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGVQVSP Sbjct: 121 QNSYKVSGGLHGVGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGVQVSP 180 Query: 181 IKVIGESDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEE 240 IKVIGESDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEE Sbjct: 181 IKVIGESDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEE 240 Query: 241 DFAFEGGTRGFVEYINKNKSILNPTIFQATGEKQSDQGTMITVDVSMQWNDAFNEQVLCF 300 DFAFEGGTRGFVEYINKNKSILNPTIFQATGEKQSDQGTMITVDVSMQWNDAFNEQVLCF Sbjct: 241 DFAFEGGTRGFVEYINKNKSILNPTIFQATGEKQSDQGTMITVDVSMQWNDAFNEQVLCF 300 Query: 301 TNNIPQRDGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDMREGLTCVLSVKVPE 360 TNNIPQRDGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDMREGLTCVLSVKVPE Sbjct: 301 TNNIPQRDGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDMREGLTCVLSVKVPE 360 Query: 361 PKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKIVEAARAREAARKAR 420 PKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKIVEAARAREAARKAR Sbjct: 361 PKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKIVEAARAREAARKAR 420 Query: 421 ELTRRKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGK 480 ELTRRKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGK Sbjct: 421 ELTRRKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGK 480 Query: 481 VLNVEKARFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIIIMTDADVDGAHIRTL 540 VLNVEKARFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIIIMTDADVDGAHIRTL Sbjct: 481 VLNVEKARFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIIIMTDADVDGAHIRTL 540 Query: 541 LLTLFYRQMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQYMMQIALNDAEIKPA 600 LLTLFYRQMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQYMMQIALNDAEIKPA Sbjct: 541 LLTLFYRQMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQYMMQIALNDAEIKPA 600 Query: 601 EDAPAITGEALVELARQYNTANAIIMRLTRAIDESALDAIMTGGVVLKMDNLEQATATAE 660 EDAPAITGEALVELARQYNTANAIIMRLTRAIDESALDAIMTGGVVLKMDNLEQATATAE Sbjct: 601 EDAPAITGEALVELARQYNTANAIIMRLTRAIDESALDAIMTGGVVLKMDNLEQATATAE 660 Query: 661 ELKKAINDINIDVQARMDEHSEKVALHIHRRQHGNIKATVIDADFVSGPDYQVLSTAAET 720 ELKKAINDINIDVQARMDEHSEKVALHIHRRQHGNIKATVIDADFVSGPDYQVLSTAAET Sbjct: 661 ELKKAINDINIDVQARMDEHSEKVALHIHRRQHGNIKATVIDADFVSGPDYQVLSTAAET 720 Query: 721 FKGLIRKGATVARGQGEKRKESVITDFRQDMAWLRDEAERGVNKQRYKGLGEMNPEQLWE 780 FKGLIRKGATVARGQGEKRKESVITDFRQ MAWLRDEAERGVNKQRYKGLGEMNPEQLWE Sbjct: 721 FKGLIRKGATVARGQGEKRKESVITDFRQAMAWLRDEAERGVNKQRYKGLGEMNPEQLWE 780 Query: 781 TTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQAGNIDV 832 TTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQAGNIDV Sbjct: 781 TTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQAGNIDV 832 >emb|CAM32658.1| DNA gyrase subunit B, type II topoisomerase, ATPase activity, protein [Herbaspirillum seropedicae] Length = 832 Score = 1713 bits (4436), Expect = 0.0, Method: Compositional matrix adjust. Identities = 830/832 (99%), Positives = 830/832 (99%) Query: 1 MSTSPADNTNSAQQSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID 60 MSTSPADNTNSAQQSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID Sbjct: 1 MSTSPADNTNSAQQSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID 60 Query: 61 EALAGYCSEIHVTIHADNSISITDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFD 120 EALAGYCSEIHVTIHADNSISITDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFD Sbjct: 61 EALAGYCSEIHVTIHADNSISITDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFD 120 Query: 121 QNSYKVSGGLHGVGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGVQVSP 180 QNSYKVSGGLHGVGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGVQVSP Sbjct: 121 QNSYKVSGGLHGVGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGVQVSP 180 Query: 181 IKVIGESDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEE 240 IKVIGESDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEE Sbjct: 181 IKVIGESDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEE 240 Query: 241 DFAFEGGTRGFVEYINKNKSILNPTIFQATGEKQSDQGTMITVDVSMQWNDAFNEQVLCF 300 DFAFEGGTRGFVEYINKNKSILNPTIFQATGEKQSDQGTMITVDVSMQWNDAFNEQVLCF Sbjct: 241 DFAFEGGTRGFVEYINKNKSILNPTIFQATGEKQSDQGTMITVDVSMQWNDAFNEQVLCF 300 Query: 301 TNNIPQRDGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDMREGLTCVLSVKVPE 360 TNNIPQRDGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDMREGLTCVLSVKVPE Sbjct: 301 TNNIPQRDGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDMREGLTCVLSVKVPE 360 Query: 361 PKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKIVEAARAREAARKAR 420 PKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKIVEAARAREAARKAR Sbjct: 361 PKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKIVEAARAREAARKAR 420 Query: 421 ELTRRKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGK 480 ELTRRKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGK Sbjct: 421 ELTRRKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGK 480 Query: 481 VLNVEKARFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIIIMTDADVDGAHIRTL 540 VLNVEKARFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIIIMTDADVDGAHIRTL Sbjct: 481 VLNVEKARFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIIIMTDADVDGAHIRTL 540 Query: 541 LLTLFYRQMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQYMMQIALNDAEIKPA 600 LLTLFYRQMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQYMMQIALNDAEIKPA Sbjct: 541 LLTLFYRQMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQYMMQIALNDAEIKPA 600 Query: 601 EDAPAITGEALVELARQYNTANAIIMRLTRAIDESALDAIMTGGVVLKMDNLEQATATAE 660 EDAPAITGEALVELARQYNTANAIIMRLTRAIDESALDAIMTGGVVLKMDNLEQATATAE Sbjct: 601 EDAPAITGEALVELARQYNTANAIIMRLTRAIDESALDAIMTGGVVLKMDNLEQATATAE 660 Query: 661 ELKKAINDINIDVQARMDEHSEKVALHIHRRQHGNIKATVIDADFVSGPDYQVLSTAAET 720 ELKKAINDINIDVQARMDEHSEKVALHIHRRQHGNIKATVIDADFVSGPDYQVLSTAAET Sbjct: 661 ELKKAINDINIDVQARMDEHSEKVALHIHRRQHGNIKATVIDADFVSGPDYQVLSTAAET 720 Query: 721 FKGLIRKGATVARGQGEKRKESVITDFRQDMAWLRDEAERGVNKQRYKGLGEMNPEQLWE 780 FKGLIRKGATVARGQ EKRKESVITDFRQ MAWLRDEAERGVNKQRYKGLGEMNPEQLWE Sbjct: 721 FKGLIRKGATVARGQCEKRKESVITDFRQAMAWLRDEAERGVNKQRYKGLGEMNPEQLWE 780 Query: 781 TTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQAGNIDV 832 TTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQAGNIDV Sbjct: 781 TTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQAGNIDV 832 >ref|YP_004750665.1| DNA gyrase subunit B [Collimonas fungivorans Ter331] gb|AEK59842.1| DNA gyrase subunit B [Collimonas fungivorans Ter331] Length = 826 Score = 1419 bits (3672), Expect = 0.0, Method: Compositional matrix adjust. Identities = 700/833 (84%), Positives = 752/833 (90%), Gaps = 8/833 (0%) Query: 1 MSTSPADNTNSAQ-QSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSI 59 MS++P DNTN Q +YGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSI Sbjct: 1 MSSAP-DNTNQPQPNAYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSI 59 Query: 60 DEALAGYCSEIHVTIHADNSISITDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKF 119 DE+LAG+C+EIHVTIHADNSISITDNGRG+PTG+K DDKH+PKRSAAEIVMTELHAGGKF Sbjct: 60 DESLAGHCTEIHVTIHADNSISITDNGRGVPTGIKFDDKHDPKRSAAEIVMTELHAGGKF 119 Query: 120 DQNSYKVSGGLHGVGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGVQVS 179 DQNSYKVSGGLHGVGVSCVN LSK LKLTIRRDGKVH MEF +G+ QNRE E +DG+ VS Sbjct: 120 DQNSYKVSGGLHGVGVSCVNGLSKLLKLTIRRDGKVHYMEFVRGVPQNRETETIDGMLVS 179 Query: 180 PIKVIGESDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKE 239 PIKVIG++DKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKE Sbjct: 180 PIKVIGDTDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKE 239 Query: 240 EDFAFEGGTRGFVEYINKNKSILNPTIFQATGEKQSDQGTMITVDVSMQWNDAFNEQVLC 299 E+FAFEGGTRGFVEYINK K++L+PTIFQATGEK ++VDVSMQWNDA+NEQVLC Sbjct: 240 ENFAFEGGTRGFVEYINKAKTVLHPTIFQATGEKDG-----VSVDVSMQWNDAYNEQVLC 294 Query: 300 FTNNIPQRDGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDMREGLTCVLSVKVP 359 FTNNIPQRDGGTHLTGLRAAMTR++NKYIEE+D AKKAKVE SGDDMREGLTCVLSVKVP Sbjct: 295 FTNNIPQRDGGTHLTGLRAAMTRILNKYIEEHDFAKKAKVETSGDDMREGLTCVLSVKVP 354 Query: 360 EPKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKIVEAARAREAARKA 419 EPKFSSQTKDKLVSSEVR PVEEIVAKTL D+L E+PNDAKIICGKIVEAARAR+AARKA Sbjct: 355 EPKFSSQTKDKLVSSEVRLPVEEIVAKTLNDYLQERPNDAKIICGKIVEAARARDAARKA 414 Query: 420 RELTRRKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRG 479 RELTRRKGVMDGLGLSSKLADCQE+DPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRG Sbjct: 415 RELTRRKGVMDGLGLSSKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRG 474 Query: 480 KVLNVEKARFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIIIMTDADVDGAHIRT 539 KVLNVEKARFEKMLSSEQITTLIATLGTSIGADEFN DKLRYHRIIIMTDADVDGAHIRT Sbjct: 475 KVLNVEKARFEKMLSSEQITTLIATLGTSIGADEFNADKLRYHRIIIMTDADVDGAHIRT 534 Query: 540 LLLTLFYRQMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQYMMQIALNDAEIKP 599 LLLTLFYRQMP LVERGHIYIAQPPLYKVK GKDERYLKDD EE YMMQ+ALNDA + P Sbjct: 535 LLLTLFYRQMPQLVERGHIYIAQPPLYKVKHGKDERYLKDDAEEVSYMMQVALNDAALVP 594 Query: 600 AEDAPAITGEALVELARQYNTANAIIMRLTRAIDESALDAIMTGGVVLKMDNLEQATATA 659 +E A I+G AL EL RQYN AN+II RLTRA+D +AL +IMT GV LK+D L A A+A Sbjct: 595 SEGALPISGPALAELVRQYNMANSIITRLTRAVDGAALTSIMT-GVTLKLDTLADAEASA 653 Query: 660 EELKKAINDINIDVQARMDEHSEKVALHIHRRQHGNIKATVIDADFVSGPDYQVLSTAAE 719 + L+ +IN+ ++ V + DE S+K AL I RR HGNIK + ID+DFV+ PDY VL AAE Sbjct: 654 QALQASINEPSVQVVVKSDELSDKHALRIQRRYHGNIKVSAIDSDFVASPDYTVLVNAAE 713 Query: 720 TFKGLIRKGATVARGQGEKRKESVITDFRQDMAWLRDEAERGVNKQRYKGLGEMNPEQLW 779 TFKGLI GA + RG GEK KES I DF Q MAWLRDEAERGV+KQRYKGLGEMNP QLW Sbjct: 714 TFKGLIGPGALIRRGAGEKVKESAIIDFHQAMAWLRDEAERGVSKQRYKGLGEMNPSQLW 773 Query: 780 ETTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQAGNIDV 832 ETTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIE NALQAGNIDV Sbjct: 774 ETTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIELNALQAGNIDV 826 >ref|YP_001351693.1| DNA gyrase subunit B [Janthinobacterium sp. Marseille] gb|ABR88535.1| DNA gyrase subunit B [Janthinobacterium sp. Marseille] Length = 832 Score = 1386 bits (3588), Expect = 0.0, Method: Compositional matrix adjust. Identities = 692/833 (83%), Positives = 747/833 (89%), Gaps = 2/833 (0%) Query: 1 MSTSPADNTNSAQQS-YGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSI 59 MS P DN Q + YGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHH VFEVLDNSI Sbjct: 1 MSAIPNDNAPQPQSAQYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHCVFEVLDNSI 60 Query: 60 DEALAGYCSEIHVTIHADNSISITDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKF 119 DE+LAG+C+EIHVTIH+DNSISITDNGRGIPTG+K DDKHEPKRSAAEIVMTELHAGGKF Sbjct: 61 DESLAGHCTEIHVTIHSDNSISITDNGRGIPTGIKWDDKHEPKRSAAEIVMTELHAGGKF 120 Query: 120 DQNSYKVSGGLHGVGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGVQVS 179 DQNSYKVSGGLHGVGVSCVN LSK LKLTIRRDGK H MEF +G+ QNRE+E +DG+ VS Sbjct: 121 DQNSYKVSGGLHGVGVSCVNGLSKLLKLTIRRDGKKHEMEFVRGVPQNREVETIDGMVVS 180 Query: 180 PIKVIGESDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKE 239 PIKV+G++DKRGTEVHFWADEEIFT+VEFHY+ILAKRIRELSFLNNGVHIKL+DQRTGKE Sbjct: 181 PIKVVGDTDKRGTEVHFWADEEIFTNVEFHYDILAKRIRELSFLNNGVHIKLSDQRTGKE 240 Query: 240 EDFAFEGGTRGFVEYINKNKSILNPTIFQATGEKQSDQGTMITVDVSMQWNDAFNEQVLC 299 EDFAFEGGTRGFVEYINK KS+L+PTIFQATGE+ SDQGT ITVDVSMQWNDA+NEQVLC Sbjct: 241 EDFAFEGGTRGFVEYINKAKSVLHPTIFQATGERLSDQGTNITVDVSMQWNDAYNEQVLC 300 Query: 300 FTNNIPQRDGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDMREGLTCVLSVKVP 359 FTNNIPQRDGGTHLTGLRAAMTRVINKYI+E++ AKKAKVEISGDDMREGLTCVLSVKVP Sbjct: 301 FTNNIPQRDGGTHLTGLRAAMTRVINKYIDEHEFAKKAKVEISGDDMREGLTCVLSVKVP 360 Query: 360 EPKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKIVEAARAREAARKA 419 EPKFSSQTKDKLVSSEVRGPVEEIVAKTL D+L EKPNDAKIICGKIVEAARAREAARKA Sbjct: 361 EPKFSSQTKDKLVSSEVRGPVEEIVAKTLADYLQEKPNDAKIICGKIVEAARAREAARKA 420 Query: 420 RELTRRKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRG 479 R+LTRRKGVMDGLGLS+KLADCQE+DPALCELY+VEGDSAGGSAKQGRDRKFQAILPLRG Sbjct: 421 RDLTRRKGVMDGLGLSAKLADCQEKDPALCELYVVEGDSAGGSAKQGRDRKFQAILPLRG 480 Query: 480 KVLNVEKARFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIIIMTDADVDGAHIRT 539 KVLNVEKARFEKML+SEQITTLIATLGTSIGADEFN +KLRYHRIIIMTDADVDGAHIRT Sbjct: 481 KVLNVEKARFEKMLASEQITTLIATLGTSIGADEFNIEKLRYHRIIIMTDADVDGAHIRT 540 Query: 540 LLLTLFYRQMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQYMMQIALNDAEIKP 599 LLLTL YRQMP LVERGH+YIAQPPLYKVK GKDERYLKDD EEA YMMQIALNDA + P Sbjct: 541 LLLTLLYRQMPQLVERGHVYIAQPPLYKVKHGKDERYLKDDVEEAVYMMQIALNDAALIP 600 Query: 600 AEDAPAITGEALVELARQYNTANAIIMRLTRAIDESALDAIMTGGVVLKMDNLEQATATA 659 +E A I G+AL EL RQYN ANAII RLTRA+D +AL AIMT GV L + ++E A A+A Sbjct: 601 SEGAQPIAGDALAELVRQYNMANAIINRLTRAVDGAALTAIMT-GVTLDLSSVEAAQASA 659 Query: 660 EELKKAINDINIDVQARMDEHSEKVALHIHRRQHGNIKATVIDADFVSGPDYQVLSTAAE 719 + L++ IN+ + V + DE S K L I+R HGN+KA+ ID+DFV+GPDY VL+ AA Sbjct: 660 QRLEQGINEPAVTVTVKSDELSGKHTLRINRMYHGNVKASSIDSDFVTGPDYTVLAAAAA 719 Query: 720 TFKGLIRKGATVARGQGEKRKESVITDFRQDMAWLRDEAERGVNKQRYKGLGEMNPEQLW 779 TFKGLI GA V RG GEK K S I+DF Q M WLR EAER V KQRYKGLGEMNPEQLW Sbjct: 720 TFKGLIGPGALVQRGAGEKAKVSAISDFHQAMNWLRSEAERNVGKQRYKGLGEMNPEQLW 779 Query: 780 ETTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQAGNIDV 832 ETTMDP VRRLLKVQIEDAIAADQIF TLMGDDVEPRRAFIE NAL AGNID+ Sbjct: 780 ETTMDPAVRRLLKVQIEDAIAADQIFTTLMGDDVEPRRAFIELNALSAGNIDI 832 >ref|YP_001098373.1| DNA gyrase subunit B [Herminiimonas arsenicoxydans] emb|CAL60244.1| DNA gyrase subunit B [Herminiimonas arsenicoxydans] Length = 835 Score = 1368 bits (3540), Expect = 0.0, Method: Compositional matrix adjust. Identities = 685/836 (81%), Positives = 743/836 (88%), Gaps = 5/836 (0%) Query: 1 MSTSPADNT----NSAQQSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLD 56 MS P DNT ++ +YGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHH VFEVLD Sbjct: 1 MSAIPNDNTPQSPSTLSAAYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHCVFEVLD 60 Query: 57 NSIDEALAGYCSEIHVTIHADNSISITDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAG 116 NSIDE+LAG+C+EIHVTIH+DNSISITDNGRGIPTG+K DDKHEPKRSAAEIVMTELHAG Sbjct: 61 NSIDESLAGHCTEIHVTIHSDNSISITDNGRGIPTGIKWDDKHEPKRSAAEIVMTELHAG 120 Query: 117 GKFDQNSYKVSGGLHGVGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGV 176 GKFDQNSYKVSGGLHGVGVSCVN LS+ LKLTIRRDGK H MEF +G+ QNRE+E +DG Sbjct: 121 GKFDQNSYKVSGGLHGVGVSCVNGLSRLLKLTIRRDGKTHYMEFVRGVPQNREIETIDGH 180 Query: 177 QVSPIKVIGESDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRT 236 VSPIKVIGE+DKRGTEVHFWADEEIF +VEFHY+ILAKRIRELSFLNNGV I+L+DQRT Sbjct: 181 IVSPIKVIGETDKRGTEVHFWADEEIFNNVEFHYDILAKRIRELSFLNNGVRIRLSDQRT 240 Query: 237 GKEEDFAFEGGTRGFVEYINKNKSILNPTIFQATGEKQSDQGTMITVDVSMQWNDAFNEQ 296 GKEE FAFEGGTRGFVEYINK KS+L+PTIFQATGE+ SDQGT I VDVSMQWNDA+NEQ Sbjct: 241 GKEELFAFEGGTRGFVEYINKAKSVLHPTIFQATGERLSDQGTNIAVDVSMQWNDAYNEQ 300 Query: 297 VLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDMREGLTCVLSV 356 V+CFTNNIPQRDGGTHLTGLRAAMTRVINKYI+E++ AKKAKVE++GDDMREGLTCVLSV Sbjct: 301 VICFTNNIPQRDGGTHLTGLRAAMTRVINKYIDEHEFAKKAKVEVTGDDMREGLTCVLSV 360 Query: 357 KVPEPKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKIVEAARAREAA 416 KVPEPKFSSQTKDKLVSSEVRGPVEEIVAKTL D+L EKPNDAKIICGKIVEAARAREAA Sbjct: 361 KVPEPKFSSQTKDKLVSSEVRGPVEEIVAKTLADYLQEKPNDAKIICGKIVEAARAREAA 420 Query: 417 RKARELTRRKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQGRDRKFQAILP 476 RKAR+LTRRKGVMDGLGLSSKLADCQE+DPALCELY+VEGDSAGGSAKQGRDRKFQAILP Sbjct: 421 RKARDLTRRKGVMDGLGLSSKLADCQEKDPALCELYVVEGDSAGGSAKQGRDRKFQAILP 480 Query: 477 LRGKVLNVEKARFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIIIMTDADVDGAH 536 LRGKVLNVEKARFEKML+SEQITTLIATLGTSIGADEFN +KLRYHRIIIMTDADVDGAH Sbjct: 481 LRGKVLNVEKARFEKMLASEQITTLIATLGTSIGADEFNIEKLRYHRIIIMTDADVDGAH 540 Query: 537 IRTLLLTLFYRQMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQYMMQIALNDAE 596 IRTLLLTL YRQMP LVERGH+YIAQPPLYKVK GKDERYLKDD EEA YMMQIALNDA Sbjct: 541 IRTLLLTLLYRQMPQLVERGHVYIAQPPLYKVKHGKDERYLKDDVEEAVYMMQIALNDAA 600 Query: 597 IKPAEDAPAITGEALVELARQYNTANAIIMRLTRAIDESALDAIMTGGVVLKMDNLEQAT 656 + PAE A I+G+AL EL RQYNT+NAII RLTR +D +AL AIMT GV L + + E A Sbjct: 601 LVPAEGAEPISGDALAELVRQYNTSNAIINRLTRMVDGAALTAIMT-GVTLDLSSQEAAN 659 Query: 657 ATAEELKKAINDINIDVQARMDEHSEKVALHIHRRQHGNIKATVIDADFVSGPDYQVLST 716 A+A+ L+ I + +++V R DE +EK +L IHR HGNIK + IDA+FV+G DY+VL+ Sbjct: 660 ASAQRLQDGIGEPSVEVIVRHDELAEKFSLRIHRMYHGNIKVSAIDAEFVNGADYRVLAA 719 Query: 717 AAETFKGLIRKGATVARGQGEKRKESVITDFRQDMAWLRDEAERGVNKQRYKGLGEMNPE 776 AA TFKGLI GA V RG GEK K I DF Q M WLR EAER V KQRYKGLGEMNP Sbjct: 720 AAATFKGLIGTGAMVQRGVGEKVKSIGINDFHQAMNWLRSEAERNVGKQRYKGLGEMNPS 779 Query: 777 QLWETTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQAGNIDV 832 QLWETTMDPTVRRLLKVQIEDAIAADQIF TLMGDDVEPRRAFIE NAL AGNID+ Sbjct: 780 QLWETTMDPTVRRLLKVQIEDAIAADQIFTTLMGDDVEPRRAFIELNALSAGNIDI 835 >ref|ZP_04577637.1| DNA gyrase subunit B [Oxalobacter formigenes HOxBLS] gb|EEO28599.1| DNA gyrase subunit B [Oxalobacter formigenes HOxBLS] Length = 830 Score = 1261 bits (3263), Expect = 0.0, Method: Compositional matrix adjust. Identities = 620/832 (74%), Positives = 710/832 (85%), Gaps = 2/832 (0%) Query: 1 MSTSPADNTNSAQQSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID 60 MS + + +YG SSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID Sbjct: 1 MSQNTQNEVQENGNAYGESSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID 60 Query: 61 EALAGYCSEIHVTIHADNSISITDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFD 120 EALAGYC+EI VT+HADNS+S+ DNGRG+PTG+K DDK+ PKRSAAEIVMTELHAGGKFD Sbjct: 61 EALAGYCTEIQVTLHADNSVSVVDNGRGVPTGIKFDDKNTPKRSAAEIVMTELHAGGKFD 120 Query: 121 QNSYKVSGGLHGVGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGVQVSP 180 QNSYKVSGGLHGVGVSCVNALS L+LTI RDGK H M+F+ G+ QN +E+++GV+ SP Sbjct: 121 QNSYKVSGGLHGVGVSCVNALSTTLQLTIWRDGKEHYMDFSHGLPQNAAVEIINGVECSP 180 Query: 181 IKVIGESDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEE 240 IKVIG+SD++GT V FW D IFT VEF YE+LA+RIRELSFLNNGV I+LTDQRTGKEE Sbjct: 181 IKVIGDSDRQGTRVQFWPDASIFTTVEFQYEVLARRIRELSFLNNGVRIRLTDQRTGKEE 240 Query: 241 DFAFEGGTRGFVEYINKNKSILNPTIFQATGEKQSDQGTMITVDVSMQWNDAFNEQVLCF 300 FA+EGGTRGFVEYIN+ KS+L+PTIFQATGE+ S+ T I VD+SMQWND++NEQVLCF Sbjct: 241 IFAYEGGTRGFVEYINRGKSVLHPTIFQATGERISELDTPIYVDISMQWNDSYNEQVLCF 300 Query: 301 TNNIPQRDGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDMREGLTCVLSVKVPE 360 TNNIPQRDGGTHLTGLRAAMTRVIN+YIEEN+LAKKAKV+++GDDMREGLTCVLSVKVPE Sbjct: 301 TNNIPQRDGGTHLTGLRAAMTRVINRYIEENELAKKAKVDVTGDDMREGLTCVLSVKVPE 360 Query: 361 PKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKIVEAARAREAARKAR 420 PKFSSQTKDKLVSSEVRGPVEEI+ KTLTDFL EKPNDAKIIC KIVEAARAREAARKAR Sbjct: 361 PKFSSQTKDKLVSSEVRGPVEEIITKTLTDFLQEKPNDAKIICSKIVEAARAREAARKAR 420 Query: 421 ELTRRKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGK 480 ELTRRKGV+DGLGLS+KLADCQE+DPAL ELY+VEGDSAGGSAKQGRDR+FQAILPLRGK Sbjct: 421 ELTRRKGVLDGLGLSAKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRRFQAILPLRGK 480 Query: 481 VLNVEKARFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIIIMTDADVDGAHIRTL 540 VLNVEK+R+EKMLSSEQITTLIATLGTSIG DEFN +KLRYHRIIIMTDADVDGAHIRTL Sbjct: 481 VLNVEKSRYEKMLSSEQITTLIATLGTSIGPDEFNIEKLRYHRIIIMTDADVDGAHIRTL 540 Query: 541 LLTLFYRQMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQYMMQIALNDAEIKPA 600 LLTLFYRQMP LVERG++YIAQPPLYK+K GKDERYLKDD EEA +MM IAL A + P Sbjct: 541 LLTLFYRQMPQLVERGYVYIAQPPLYKIKNGKDERYLKDDLEEANHMMSIALQGASLLPG 600 Query: 601 EDAPAITGEALVELARQYNTANAIIMRLTRAIDESALDAIMTGGVVLKMDNLEQATATAE 660 E I+GE L E+A Q+ A II RL+R ID L AIM GV L+++ +E A +A Sbjct: 601 EGVAPISGEQLKEMADQHTVAYNIIQRLSRFIDTDVLSAIMD-GVKLRLNTIEDAEKSAV 659 Query: 661 ELKKAINDINIDVQARMDEHSEKVALHIHRRQHGNIKATVIDADFVSGPDYQVLSTAAET 720 EL AIND ++ V+ + S ++L + R +GN TV+D DFV G DY++L A + Sbjct: 660 ELTAAINDPSVTVKVEKNA-SGALSLLVERTLYGNRHVTVLDTDFVYGNDYRILEKTATS 718 Query: 721 FKGLIRKGATVARGQGEKRKESVITDFRQDMAWLRDEAERGVNKQRYKGLGEMNPEQLWE 780 F LI GA + RG+G++ K+ + +F Q M WLR EAERG++KQRYKGLGEMNP+QLWE Sbjct: 719 FLNLIGSGAVIRRGEGDRMKQQAVQNFHQAMQWLRTEAERGISKQRYKGLGEMNPDQLWE 778 Query: 781 TTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQAGNIDV 832 TTMDP++RRLLKV+IEDAIAADQIF TLMGD+VEPRRAFIE++AL AGNIDV Sbjct: 779 TTMDPSMRRLLKVRIEDAIAADQIFTTLMGDNVEPRRAFIENHALLAGNIDV 830 >ref|ZP_04579796.1| DNA gyrase subunit B [Oxalobacter formigenes OXCC13] gb|EEO30769.1| DNA gyrase subunit B [Oxalobacter formigenes OXCC13] Length = 830 Score = 1261 bits (3262), Expect = 0.0, Method: Compositional matrix adjust. Identities = 618/832 (74%), Positives = 711/832 (85%), Gaps = 2/832 (0%) Query: 1 MSTSPADNTNSAQQSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID 60 MS + ++ +++YG SSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID Sbjct: 1 MSQNSQNDVQQNEENYGVSSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID 60 Query: 61 EALAGYCSEIHVTIHADNSISITDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFD 120 EALAG+C+EIHVT+HADNS+S+ DNGRG+PTG+K DDK+ P+RSAAEIVMTELHAGGKFD Sbjct: 61 EALAGFCTEIHVTLHADNSVSVVDNGRGVPTGIKFDDKNTPRRSAAEIVMTELHAGGKFD 120 Query: 121 QNSYKVSGGLHGVGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGVQVSP 180 QNSYKVSGGLHGVGVSCVN LS LKLTI RDGK H MEFA+G+ QN +EM++GV+ SP Sbjct: 121 QNSYKVSGGLHGVGVSCVNGLSTLLKLTIWRDGKEHYMEFAQGLPQNNSVEMINGVECSP 180 Query: 181 IKVIGESDKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEE 240 IK++G SDK+GT V FW D IFT +EF YE+LA+RIRELSFLNNGV I+LTDQRTGKEE Sbjct: 181 IKIVGVSDKQGTRVQFWPDPTIFTTIEFQYEVLARRIRELSFLNNGVRIRLTDQRTGKEE 240 Query: 241 DFAFEGGTRGFVEYINKNKSILNPTIFQATGEKQSDQGTMITVDVSMQWNDAFNEQVLCF 300 FA+EGGTRGFVEYIN+ KS+L+PTIFQATGE+ S+ GT I VD+SMQWND++NEQVLCF Sbjct: 241 IFAYEGGTRGFVEYINRGKSVLHPTIFQATGERMSELGTPIYVDISMQWNDSYNEQVLCF 300 Query: 301 TNNIPQRDGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDMREGLTCVLSVKVPE 360 TNNIPQRDGGTHLTGLRAAMTRVIN+YIEEN+LAKKAKV+++GDDMREGLTCVLSVKVPE Sbjct: 301 TNNIPQRDGGTHLTGLRAAMTRVINRYIEENELAKKAKVDVTGDDMREGLTCVLSVKVPE 360 Query: 361 PKFSSQTKDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKIVEAARAREAARKAR 420 PKFSSQTKDKLVSSEVRGPVEEI+ KTLTDFL EKPNDAKIIC KIVEAARAREAARKAR Sbjct: 361 PKFSSQTKDKLVSSEVRGPVEEIITKTLTDFLQEKPNDAKIICSKIVEAARAREAARKAR 420 Query: 421 ELTRRKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGK 480 ELTRRKGV+DGLGLS+KLADCQE+DP++CELY+VEGDSAGGSAKQGRDRKFQAILPLRGK Sbjct: 421 ELTRRKGVLDGLGLSAKLADCQEKDPSMCELYLVEGDSAGGSAKQGRDRKFQAILPLRGK 480 Query: 481 VLNVEKARFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIIIMTDADVDGAHIRTL 540 VLNVEK+R+EKMLSSEQITTLIATLGTSIG DEFN DKLRYHRIIIMTDADVDGAHIRTL Sbjct: 481 VLNVEKSRYEKMLSSEQITTLIATLGTSIGPDEFNIDKLRYHRIIIMTDADVDGAHIRTL 540 Query: 541 LLTLFYRQMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQYMMQIALNDAEIKPA 600 LLTLFYRQMP LVERG++YIAQPPLYK+K GKDERYLKDD EEA +MM IAL A + P Sbjct: 541 LLTLFYRQMPQLVERGYVYIAQPPLYKIKNGKDERYLKDDLEEANHMMSIALQGASLTPR 600 Query: 601 EDAPAITGEALVELARQYNTANAIIMRLTRAIDESALDAIMTGGVVLKMDNLEQATATAE 660 E A I GE L E+A Q+ A II R++R ID L AIM G L ++++E+A +A Sbjct: 601 EGAEPIAGEQLKEMADQHTIAYNIIQRISRMIDMDVLSAIMNGA-KLNLNSMEEAEQSAR 659 Query: 661 ELKKAINDINIDVQARMDEHSEKVALHIHRRQHGNIKATVIDADFVSGPDYQVLSTAAET 720 L K IND ++V +E+ + +AL + + +GN T +D DFV G DY+ L A Sbjct: 660 SLAKIINDPTVEVNVENNENGD-IALSVIKTHYGNAHVTRLDKDFVYGNDYRTLEKTATA 718 Query: 721 FKGLIRKGATVARGQGEKRKESVITDFRQDMAWLRDEAERGVNKQRYKGLGEMNPEQLWE 780 F LI GA + RG+G++ ++ + +F Q M WLR EAERG++KQRYKGLGEMNP+QLWE Sbjct: 719 FLNLIGPGAMITRGEGDRMRQLAVKNFHQAMQWLRSEAERGISKQRYKGLGEMNPDQLWE 778 Query: 781 TTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQAGNIDV 832 TTMDPT+RRLLKV+IEDAI ADQIF TLMGD+VEPRRAFIE++AL AGNIDV Sbjct: 779 TTMDPTMRRLLKVKIEDAITADQIFTTLMGDNVEPRRAFIENHALLAGNIDV 830 >emb|CCA88284.1| DNA gyrase, subunit B (type II topoisomerase) [Ralstonia syzygii R24] Length = 838 Score = 1234 bits (3193), Expect = 0.0, Method: Compositional matrix adjust. Identities = 619/836 (74%), Positives = 701/836 (83%), Gaps = 23/836 (2%) Query: 13 QQSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYCSEIHV 72 + SYGA+SIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAG+C+EIHV Sbjct: 10 ENSYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGHCTEIHV 69 Query: 73 TIHADNSISITDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSGGLHG 132 TIH DNSIS+TDNGRGIPTG+K DDKHEP+RSAAEIVMTELHAGGKFDQNSYKVSGGLHG Sbjct: 70 TIHTDNSISVTDNGRGIPTGIKFDDKHEPRRSAAEIVMTELHAGGKFDQNSYKVSGGLHG 129 Query: 133 VGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDG-----VQVSPIKVIGES 187 VGVSCVN LSK LKLT+RRDG+VH M+FA+GI QNR LE + V+VSP++V G + Sbjct: 130 VGVSCVNGLSKWLKLTVRRDGRVHHMDFARGIPQNRLLEQAEAPDGKMVEVSPLRVSGTT 189 Query: 188 DKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEEDFAFEGG 247 DKRGTEVHF ADEEIFT+VE+HYEIL+KRIRELSFLNNGVHIKLTDQRTGKEEDFAF GG Sbjct: 190 DKRGTEVHFLADEEIFTNVEYHYEILSKRIRELSFLNNGVHIKLTDQRTGKEEDFAFSGG 249 Query: 248 TRGFVEYINKNKSILNPTIFQATGEKQSDQGTMITVDVSMQWNDAFNEQVLCFTNNIPQR 307 +GFVEYINKNKS+L+PTIF ATGEK + V+VSMQWND FNEQVLCFTNNIPQR Sbjct: 250 VKGFVEYINKNKSVLHPTIFHATGEKDG-----VGVEVSMQWNDGFNEQVLCFTNNIPQR 304 Query: 308 DGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDMREGLTCVLSVKVPEPKFSSQT 367 DGGTHLTGLRAAMTRVINKYI +N++AKKAKVE SGDDMREGLTCVLSVKVPEPKFSSQT Sbjct: 305 DGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKVPEPKFSSQT 364 Query: 368 KDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKIVEAARAREAARKARELTRRKG 427 KDKLVSSEVR PVEE+VAK LTDFL E PNDAKIICGKIVEAARAREAARKARE+TRRKG Sbjct: 365 KDKLVSSEVRLPVEEMVAKALTDFLLETPNDAKIICGKIVEAARAREAARKAREMTRRKG 424 Query: 428 VMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKA 487 V+DG+GL KLADCQE+DPAL EL+IVEGDSAGGSAKQGRDRKFQAILPL+GK+LNVE+A Sbjct: 425 VLDGMGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERA 484 Query: 488 RFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIIIMTDADVDGAHIRTLLLTLFYR 547 RF+KMLSS+++ TLI +GT IG D++N DKLRYHRIIIMTDADVDG+HIRTLLLT FYR Sbjct: 485 RFDKMLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTLLLTFFYR 544 Query: 548 QMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQYMMQIALNDAEIKPAEDAPAIT 607 QMPA++ERGH+YIAQPPLYK+K GK+ERY+KDD E A Y+M+ AL+ A + A D I Sbjct: 545 QMPAIIERGHVYIAQPPLYKIKHGKEERYIKDDVEMAAYLMRQALDTAILVRA-DGTEIA 603 Query: 608 GEALVELARQYNTANAIIMRLTRAIDESALDAIMTGGVVLKMDNLEQATATAEELKKAIN 667 +AL ELARQY + A+I RL+R ID AL AI GV L + + A A+A+ LK + Sbjct: 604 SDALAELARQYQFSRAVIERLSRVIDADALRAIAE-GVALDLSSEAGAEASAKALKARLL 662 Query: 668 DI-----------NIDVQARMDEHSEKVALHIHRRQHGNIKATVIDADFVSGPDYQVLST 716 ++ D + DE EK + + RRQHGN + + IDADFV+G DY LS Sbjct: 663 EMQGNASSANGGATADAFMQYDEKHEKYRVMVVRRQHGNQRLSHIDADFVAGADYATLSQ 722 Query: 717 AAETFKGLIRKGATVARGQGEKRKESVITDFRQDMAWLRDEAERGVNKQRYKGLGEMNPE 776 A+TF+GLI +GA V RG G+K++E +TDF + WL EAERG+++QRYKGLGEMNP Sbjct: 723 TAQTFQGLIGEGAKVRRGTGDKQREQAVTDFHAAITWLLGEAERGISRQRYKGLGEMNPS 782 Query: 777 QLWETTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQAGNIDV 832 QLWETTMD T RRLLKVQIEDAIAADQIF TLMGDDVEPRR FIESNAL A NIDV Sbjct: 783 QLWETTMDVTQRRLLKVQIEDAIAADQIFTTLMGDDVEPRRNFIESNALVARNIDV 838 >emb|CCA80877.1| DNA gyrase, subunit B (type II topoisomerase) [blood disease bacterium R229] Length = 838 Score = 1233 bits (3190), Expect = 0.0, Method: Compositional matrix adjust. Identities = 618/836 (73%), Positives = 701/836 (83%), Gaps = 23/836 (2%) Query: 13 QQSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYCSEIHV 72 + SYGA+SIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAG+C+EIHV Sbjct: 10 ENSYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGHCTEIHV 69 Query: 73 TIHADNSISITDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSGGLHG 132 TIH DNSIS+TDNGRGIPTG+K DDKHEP+RSAAEIVMTELHAGGKFDQNSYKVSGGLHG Sbjct: 70 TIHTDNSISVTDNGRGIPTGIKFDDKHEPRRSAAEIVMTELHAGGKFDQNSYKVSGGLHG 129 Query: 133 VGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDG-----VQVSPIKVIGES 187 VGVSCVN LSK LKLT+RRDG+VH M+FA+GI QNR LE + V+VSP++V G + Sbjct: 130 VGVSCVNGLSKWLKLTVRRDGRVHHMDFARGIPQNRLLEQAEAPDGKMVEVSPLRVSGTT 189 Query: 188 DKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEEDFAFEGG 247 DKRGTEVHF ADEEIFT+VE+HYEIL+KRIRELSFLNNGVHIKLTDQRTGKEEDFAF GG Sbjct: 190 DKRGTEVHFLADEEIFTNVEYHYEILSKRIRELSFLNNGVHIKLTDQRTGKEEDFAFSGG 249 Query: 248 TRGFVEYINKNKSILNPTIFQATGEKQSDQGTMITVDVSMQWNDAFNEQVLCFTNNIPQR 307 +GFVEYINKNKS+L+PTIF ATGEK + V+VSMQWND FNEQVLCFTNNIPQR Sbjct: 250 VKGFVEYINKNKSVLHPTIFHATGEKDG-----VGVEVSMQWNDGFNEQVLCFTNNIPQR 304 Query: 308 DGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDMREGLTCVLSVKVPEPKFSSQT 367 DGGTHLTGLRAAMTRVINKYI +N++AKKAKVE SGDDMREGLTCVLSVKVPEPKFSSQT Sbjct: 305 DGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKVPEPKFSSQT 364 Query: 368 KDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKIVEAARAREAARKARELTRRKG 427 KDKLVSSEVR PVEE+VAK LTDFL E PNDAKIICGKIVEAARAREAARKARE+TRRKG Sbjct: 365 KDKLVSSEVRLPVEEMVAKALTDFLLETPNDAKIICGKIVEAARAREAARKAREMTRRKG 424 Query: 428 VMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKA 487 V+DG+GL KLADCQE+DPAL EL+IVEGDSAGGSAKQGRDRKFQAILPL+GK+LNVE+A Sbjct: 425 VLDGMGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERA 484 Query: 488 RFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIIIMTDADVDGAHIRTLLLTLFYR 547 RF+KMLSS+++ TLI +GT IG D++N DKLRYHRIIIMTDADVDG+HIRTLLLT FYR Sbjct: 485 RFDKMLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTLLLTFFYR 544 Query: 548 QMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQYMMQIALNDAEIKPAEDAPAIT 607 QMPA++ERGH+YIAQPPLYK+K GK+ERY+KDD E A Y+M+ AL+ A + A D I Sbjct: 545 QMPAIIERGHVYIAQPPLYKIKHGKEERYIKDDVEMAAYLMRQALDTAILVRA-DGTEIA 603 Query: 608 GEALVELARQYNTANAIIMRLTRAIDESALDAIMTGGVVLKMDNLEQATATAEELKKAIN 667 +AL ELARQY + A+I RL+R ID AL AI GV L + + A A+A+ LK + Sbjct: 604 SDALAELARQYQFSRAVIERLSRVIDADALRAIAE-GVALDLSSEAGAEASAKALKARLL 662 Query: 668 DI-----------NIDVQARMDEHSEKVALHIHRRQHGNIKATVIDADFVSGPDYQVLST 716 ++ D + DE EK + + RRQHGN + + IDADFV+G DY L+ Sbjct: 663 EMQGNASSANGGATADAFMQYDEKHEKYRVMVVRRQHGNQRLSHIDADFVAGADYATLAQ 722 Query: 717 AAETFKGLIRKGATVARGQGEKRKESVITDFRQDMAWLRDEAERGVNKQRYKGLGEMNPE 776 A+TF+GLI +GA V RG G+K++E +TDF + WL EAERG+++QRYKGLGEMNP Sbjct: 723 TAQTFQGLIGEGAKVRRGTGDKQREQAVTDFHAAITWLLGEAERGISRQRYKGLGEMNPS 782 Query: 777 QLWETTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQAGNIDV 832 QLWETTMD T RRLLKVQIEDAIAADQIF TLMGDDVEPRR FIESNAL A NIDV Sbjct: 783 QLWETTMDVTQRRLLKVQIEDAIAADQIFTTLMGDDVEPRRNFIESNALVARNIDV 838 >ref|YP_003750712.1| DNA gyrase, subunit B (type II topoisomerase) [Ralstonia solanacearum PSI07] emb|CBJ49384.1| DNA gyrase, subunit B (type II topoisomerase) [Ralstonia solanacearum PSI07] Length = 838 Score = 1232 bits (3187), Expect = 0.0, Method: Compositional matrix adjust. Identities = 618/836 (73%), Positives = 701/836 (83%), Gaps = 23/836 (2%) Query: 13 QQSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYCSEIHV 72 + SYGA+SIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAG+C+EIHV Sbjct: 10 ENSYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGHCTEIHV 69 Query: 73 TIHADNSISITDNGRGIPTGLKMDDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSGGLHG 132 TIH DNSIS+TDNGRGIPTG+K DDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSGGLHG Sbjct: 70 TIHTDNSISVTDNGRGIPTGIKFDDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSGGLHG 129 Query: 133 VGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDG-----VQVSPIKVIGES 187 VGVSCVN LSK LKLT+RRDG+VH M+FA+GI QNR LE + V+VSP++V G + Sbjct: 130 VGVSCVNGLSKWLKLTVRRDGRVHHMDFARGIPQNRLLEQAEAPDGKMVEVSPLRVSGTT 189 Query: 188 DKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKEEDFAFEGG 247 DKRGTEVHF ADEEIFT+VE+HYEIL+KRIRELSFLNNGVHIKLTDQRTGKEEDFAF GG Sbjct: 190 DKRGTEVHFLADEEIFTNVEYHYEILSKRIRELSFLNNGVHIKLTDQRTGKEEDFAFSGG 249 Query: 248 TRGFVEYINKNKSILNPTIFQATGEKQSDQGTMITVDVSMQWNDAFNEQVLCFTNNIPQR 307 +GFVEYINKNK++L+PT+F ATGEK + V+VSMQWND FNEQVLCFTNNIPQR Sbjct: 250 VKGFVEYINKNKTVLHPTVFNATGEKDG-----VGVEVSMQWNDGFNEQVLCFTNNIPQR 304 Query: 308 DGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDMREGLTCVLSVKVPEPKFSSQT 367 DGGTHLTGLRAAMTRVINKYI +N++AKKAKVE SGDDMREGLTCVLSVKVPEPKFSSQT Sbjct: 305 DGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKVPEPKFSSQT 364 Query: 368 KDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKIVEAARAREAARKARELTRRKG 427 KDKLVSSEVR PVEE+VAK LTDFL E PNDAKIICGKIVEAARAREAARKARE+TRRKG Sbjct: 365 KDKLVSSEVRLPVEEMVAKALTDFLLETPNDAKIICGKIVEAARAREAARKAREMTRRKG 424 Query: 428 VMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKA 487 V+DG+GL KLADCQE+DPAL EL+IVEGDSAGGSAKQGRDRKFQAILPL+GK+LNVE+A Sbjct: 425 VLDGMGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERA 484 Query: 488 RFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIIIMTDADVDGAHIRTLLLTLFYR 547 RF+KMLSS+++ TLI +GT IG D++N DKLRYHRIIIMTDADVDG+HIRTLLLT FYR Sbjct: 485 RFDKMLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTLLLTFFYR 544 Query: 548 QMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQYMMQIALNDAEIKPAEDAPAIT 607 QMPA++ERGH+YIAQPPLYK+K GK+ERY+KDD E A Y+M+ AL+ A + A D I Sbjct: 545 QMPAIIERGHVYIAQPPLYKIKHGKEERYIKDDVEMAAYLMRQALDTAILVRA-DGTEIA 603 Query: 608 GEALVELARQYNTANAIIMRLTRAIDESALDAIMTGGVVLKMDNLEQATATAEELKKAIN 667 +AL ELARQY + A+I RL+R ID AL AI GV L + + A A+A+ LK + Sbjct: 604 SDALAELARQYQFSRAVIERLSRVIDADALRAIAE-GVALDLSSEAGAEASAKALKARLL 662 Query: 668 DI-----------NIDVQARMDEHSEKVALHIHRRQHGNIKATVIDADFVSGPDYQVLST 716 ++ D + DE EK + + RRQHGN + + IDADFV+G DY LS Sbjct: 663 EMQGNASSANGGATADAFMQYDEKHEKYRVMVVRRQHGNQRLSHIDADFVAGADYATLSQ 722 Query: 717 AAETFKGLIRKGATVARGQGEKRKESVITDFRQDMAWLRDEAERGVNKQRYKGLGEMNPE 776 A+TF+GLI +GA V RG G+K++E +TDF + WL EAERG+++QRYKGLGEMNP Sbjct: 723 TAQTFQGLIGEGAKVRRGTGDKQREQGVTDFHAAITWLLGEAERGISRQRYKGLGEMNPS 782 Query: 777 QLWETTMDPTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQAGNIDV 832 QLWETTMD T RRLLKVQIEDAIAADQIF TLMGDDVEPRR FIESNAL A NIDV Sbjct: 783 QLWETTMDVTQRRLLKVQIEDAIAADQIFTTLMGDDVEPRRNFIESNALVARNIDV 838