BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0515.p (220 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001101639.1| 16S rRNA methyltransferase GidB [Herminiimon... 296 2e-78 ref|YP_001355328.1| 16S rRNA methyltransferase GidB [Janthinobac... 290 7e-77 ref|ZP_08272542.1| Ribosomal RNA small subunit methyltransferase... 284 5e-75 ref|YP_003778158.1| methyltransferase GidB [Herbaspirillum serop... 278 6e-73 ref|YP_004755048.1| ribosomal RNA small subunit methyltransferas... 276 1e-72 ref|ZP_04577646.1| ribosomal RNA small subunit methyltransferase... 243 1e-62 ref|YP_001901074.1| 16S rRNA methyltransferase GidB [Ralstonia p... 238 4e-61 ref|ZP_00944004.1| Methyltransferase gidB [Ralstonia solanacearu... 235 3e-60 emb|CAQ17880.1| methyltransferase gidb (glucose inhibited divisi... 235 4e-60 gb|AEG67419.1| methyltransferase [Ralstonia solanacearum Po82] 234 7e-60 >ref|YP_001101639.1| 16S rRNA methyltransferase GidB [Herminiimonas arsenicoxydans] sp|A4GAI1.1|RSMG_HERAR RecName: Full=Ribosomal RNA small subunit methyltransferase G; AltName: Full=16S rRNA 7-methylguanosine methyltransferase; Short=16S rRNA m7G methyltransferase emb|CAL63518.1| Methyltransferase gidB (Glucose-inhibited division protein B) [Herminiimonas arsenicoxydans] Length = 218 Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 144/213 (67%), Positives = 171/213 (80%) Query: 6 DLNHLTRTLKEGATAMGLTLSDAQLDKLMAYQALLAKWNKVYNLTALRDPAQMVTHHLLD 65 D LT L EGA + LTLS+AQ+ KL+ Y AL+ KWN VYNLTA+RDP QMVT HLLD Sbjct: 5 DRPALTAILVEGARGLSLTLSEAQITKLIDYLALMVKWNSVYNLTAVRDPLQMVTQHLLD 64 Query: 66 SLSAVSAFTGAQRVLDVGAGGGLPGIVLAIWAAQAQPQMKITLVDTVQKKTAFLNQVKAQ 125 SL+AVSAF GA+ VLDVGAGGGLPGIVLAIWAA+A+P+M+++L+DTV KKTAFL QVKA+ Sbjct: 65 SLAAVSAFAGAKNVLDVGAGGGLPGIVLAIWAAEAEPEMRVSLIDTVHKKTAFLTQVKAE 124 Query: 126 LQLGNVTVVHARVEQLPIEQQYDVITSRAFAELKDFVTWSNHLLQQGGKYIALKGVLPQE 185 L L NV+V ARVEQ ++DVITSRAFAEL DFV WS HLL +GG++IALKGV P Sbjct: 125 LGLANVSVHTARVEQWNAPHKFDVITSRAFAELNDFVNWSGHLLDEGGEFIALKGVAPDT 184 Query: 186 EIDRLPPGWAVQQVQPLQVPGLDAERHLIFMER 218 E+ LP GW V++V+PLQVP L AERHLIF+ER Sbjct: 185 EVAHLPAGWKVREVRPLQVPTLQAERHLIFIER 217 >ref|YP_001355328.1| 16S rRNA methyltransferase GidB [Janthinobacterium sp. Marseille] sp|A6T481.1|RSMG_JANMA RecName: Full=Ribosomal RNA small subunit methyltransferase G; AltName: Full=16S rRNA 7-methylguanosine methyltransferase; Short=16S rRNA m7G methyltransferase gb|ABR88439.1| glucose inhibited division protein B [Janthinobacterium sp. Marseille] Length = 220 Score = 290 bits (743), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 142/214 (66%), Positives = 170/214 (79%) Query: 6 DLNHLTRTLKEGATAMGLTLSDAQLDKLMAYQALLAKWNKVYNLTALRDPAQMVTHHLLD 65 D LT L +GA + L LS+AQ+ KL+ Y AL+AKWN VYNLTA+RDP QMVT HLLD Sbjct: 5 DRPALTVLLVQGARDLSLNLSEAQITKLIDYLALMAKWNSVYNLTAVRDPVQMVTQHLLD 64 Query: 66 SLSAVSAFTGAQRVLDVGAGGGLPGIVLAIWAAQAQPQMKITLVDTVQKKTAFLNQVKAQ 125 SL+AVSAF+ A+ VLDVGAGGGLPGIVLAIWAA+A P+M+I+++DTV KKTAFL QVKA+ Sbjct: 65 SLAAVSAFSNAKNVLDVGAGGGLPGIVLAIWAAEAHPEMRISMIDTVHKKTAFLTQVKAE 124 Query: 126 LQLGNVTVVHARVEQLPIEQQYDVITSRAFAELKDFVTWSNHLLQQGGKYIALKGVLPQE 185 L L NV+V ARVEQ Q++DVITSRAFA+L DFV WS HLL GG+YIALKGV P Sbjct: 125 LNLSNVSVYTARVEQWQAPQKFDVITSRAFADLSDFVNWSEHLLADGGQYIALKGVAPDT 184 Query: 186 EIDRLPPGWAVQQVQPLQVPGLDAERHLIFMERT 219 E+ LP GW V++V+ LQVP L AERHL+F+ERT Sbjct: 185 EVAGLPAGWQVREVRALQVPTLQAERHLVFIERT 218 >ref|ZP_08272542.1| Ribosomal RNA small subunit methyltransferase G [Oxalobacteraceae bacterium IMCC9480] gb|EGF33990.1| Ribosomal RNA small subunit methyltransferase G [Oxalobacteraceae bacterium IMCC9480] Length = 221 Score = 284 bits (727), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 139/220 (63%), Positives = 172/220 (78%) Query: 1 MSNTADLNHLTRTLKEGATAMGLTLSDAQLDKLMAYQALLAKWNKVYNLTALRDPAQMVT 60 M+NT + LT+ L++GAT++ L L A L++L+ Y ALLAKWN VYNLTA+RDP QMVT Sbjct: 1 MTNTFNRLELTQLLRDGATSLDLFLEPATLERLIDYVALLAKWNTVYNLTAIRDPQQMVT 60 Query: 61 HHLLDSLSAVSAFTGAQRVLDVGAGGGLPGIVLAIWAAQAQPQMKITLVDTVQKKTAFLN 120 HLLD+L+ + AF + VLDVGAGGGLPG+VLAIWA QA P ++I++VDTV KKTAFL Sbjct: 61 QHLLDTLAILPAFLHVKHVLDVGAGGGLPGMVLAIWAQQANPALRISMVDTVHKKTAFLT 120 Query: 121 QVKAQLQLGNVTVVHARVEQLPIEQQYDVITSRAFAELKDFVTWSNHLLQQGGKYIALKG 180 QVK +L L NVTV RVE L + Q +DVITSRAFAEL DFV WS HLL + G++IA+KG Sbjct: 121 QVKVELGLTNVTVHTGRVEALKVTQLFDVITSRAFAELLDFVNWSGHLLAEDGRFIAMKG 180 Query: 181 VLPQEEIDRLPPGWAVQQVQPLQVPGLDAERHLIFMERTT 220 LP +EI RLP GW V +++PLQVPGL+AERHLIF+ER T Sbjct: 181 QLPVDEIARLPAGWKVAEIRPLQVPGLNAERHLIFIERDT 220 >ref|YP_003778158.1| methyltransferase GidB [Herbaspirillum seropedicae SmR1] gb|ADJ66250.1| methyltransferase GidB (glucose inhibited division protein B) protein [Herbaspirillum seropedicae SmR1] Length = 139 Score = 278 bits (710), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 139/139 (100%), Positives = 139/139 (100%) Query: 1 MSNTADLNHLTRTLKEGATAMGLTLSDAQLDKLMAYQALLAKWNKVYNLTALRDPAQMVT 60 MSNTADLNHLTRTLKEGATAMGLTLSDAQLDKLMAYQALLAKWNKVYNLTALRDPAQMVT Sbjct: 1 MSNTADLNHLTRTLKEGATAMGLTLSDAQLDKLMAYQALLAKWNKVYNLTALRDPAQMVT 60 Query: 61 HHLLDSLSAVSAFTGAQRVLDVGAGGGLPGIVLAIWAAQAQPQMKITLVDTVQKKTAFLN 120 HHLLDSLSAVSAFTGAQRVLDVGAGGGLPGIVLAIWAAQAQPQMKITLVDTVQKKTAFLN Sbjct: 61 HHLLDSLSAVSAFTGAQRVLDVGAGGGLPGIVLAIWAAQAQPQMKITLVDTVQKKTAFLN 120 Query: 121 QVKAQLQLGNVTVVHARVE 139 QVKAQLQLGNVTVVHARVE Sbjct: 121 QVKAQLQLGNVTVVHARVE 139 >ref|YP_004755048.1| ribosomal RNA small subunit methyltransferase G [Collimonas fungivorans Ter331] gb|AEK64225.1| Ribosomal RNA small subunit methyltransferase G [Collimonas fungivorans Ter331] Length = 223 Score = 276 bits (706), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 136/209 (65%), Positives = 173/209 (82%) Query: 10 LTRTLKEGATAMGLTLSDAQLDKLMAYQALLAKWNKVYNLTALRDPAQMVTHHLLDSLSA 69 L +L++GA+A+G+ L Q +L+AY LLAKWNKVYNLT++R+PAQM+THHLLDSL+ Sbjct: 14 LEASLQQGASALGIALDQGQQQQLLAYLDLLAKWNKVYNLTSIREPAQMMTHHLLDSLAV 73 Query: 70 VSAFTGAQRVLDVGAGGGLPGIVLAIWAAQAQPQMKITLVDTVQKKTAFLNQVKAQLQLG 129 V AFT A+ VLDVGAGGGLPG++LAIWA +A+P+M+++++DTV KKTAFL QVKA+L LG Sbjct: 74 VPAFTEAENVLDVGAGGGLPGMILAIWAGKARPRMRVSMIDTVHKKTAFLTQVKAELGLG 133 Query: 130 NVTVVHARVEQLPIEQQYDVITSRAFAELKDFVTWSNHLLQQGGKYIALKGVLPQEEIDR 189 NV+V ARVEQL + Q++DVITSRAFAEL DF+ WS HLL G++IALKGV P EEI R Sbjct: 134 NVSVHTARVEQLQVAQKFDVITSRAFAELTDFINWSEHLLTDDGRFIALKGVRPDEEIAR 193 Query: 190 LPPGWAVQQVQPLQVPGLDAERHLIFMER 218 LP GW V + +PL VPGLDAERHL+F++R Sbjct: 194 LPAGWQVTETRPLAVPGLDAERHLVFIKR 222 >ref|ZP_04577646.1| ribosomal RNA small subunit methyltransferase G [Oxalobacter formigenes HOxBLS] gb|EEO28608.1| ribosomal RNA small subunit methyltransferase G [Oxalobacter formigenes HOxBLS] Length = 221 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 111/205 (54%), Positives = 155/205 (75%), Gaps = 4/205 (1%) Query: 14 LKEGATAMGLTLSDAQLDKLMAYQALLAKWNKVYNLTALRDPAQMVTHHLLDSLSAVSAF 73 L++GA +G++L D QL+KL Y LL+KWN +YNLTA+RD M+THHL+DSLS V Sbjct: 11 LEKGARELGISLGDNQLNKLSTYLVLLSKWNAIYNLTAIRDWRAMLTHHLMDSLSIVPFL 70 Query: 74 TGAQRVLDVGAGGGLPGIVLAIWAAQAQPQMKITLVDTVQKKTAFLNQVKAQLQLGNVTV 133 + +LDVG+GGGLPG++LAI A P++K+TL+D V KKTAF+NQVK +L L NVTV Sbjct: 71 LECKNLLDVGSGGGLPGLILAI----AYPELKVTLIDIVHKKTAFMNQVKIELALKNVTV 126 Query: 134 VHARVEQLPIEQQYDVITSRAFAELKDFVTWSNHLLQQGGKYIALKGVLPQEEIDRLPPG 193 RVE+L +++++DVI SRAF+ L DFV+ S HLL + G++ A+KG++P+EEI L PG Sbjct: 127 CTGRVEELFVDKKFDVIVSRAFSSLSDFVSLSGHLLDENGRFYAMKGLIPEEEISNLDPG 186 Query: 194 WAVQQVQPLQVPGLDAERHLIFMER 218 W V +++PL+VP L+A+RHLI M + Sbjct: 187 WKVSKIEPLKVPCLEAQRHLIVMAK 211 >ref|YP_001901074.1| 16S rRNA methyltransferase GidB [Ralstonia pickettii 12J] gb|ACD28642.1| methyltransferase GidB [Ralstonia pickettii 12J] Length = 222 Score = 238 bits (607), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 123/211 (58%), Positives = 149/211 (70%), Gaps = 12/211 (5%) Query: 14 LKEGATAMGLTLSDAQLDKLMAYQALLAKWNKVYNLTALRDPAQMVTHHLLDSLSAVSAF 73 L+ GA A+GL+L DAQ+D+L+AYQ LLAKWN+VYNLTA+RD M+THHLLDSLSAVS Sbjct: 12 LEAGARALGLSLDDAQVDRLLAYQGLLAKWNRVYNLTAIRDAGDMLTHHLLDSLSAVSRI 71 Query: 74 TG--------AQRVLDVGAGGGLPGIVLAIWAAQAQPQMKITLVDTVQKKTAFLNQVKAQ 125 G A RVLDVG+GGGLPGI LAI A P + +T+VD VQKKTAFL Q +A+ Sbjct: 72 AGLARRAQPDAPRVLDVGSGGGLPGIPLAI----AFPDVSVTMVDIVQKKTAFLTQCRAE 127 Query: 126 LQLGNVTVVHARVEQLPIEQQYDVITSRAFAELKDFVTWSNHLLQQGGKYIALKGVLPQE 185 L L N VE+L Y VITSRAFAEL DFV + HLL GG+ +A+KGV P Sbjct: 128 LGLANAQSHWGHVEKLADATGYGVITSRAFAELVDFVNLAGHLLAPGGRMVAMKGVRPDA 187 Query: 186 EIDRLPPGWAVQQVQPLQVPGLDAERHLIFM 216 EI+RLP GW V+ ++ L VPGL AERHL+ + Sbjct: 188 EIERLPAGWTVEAIERLTVPGLPAERHLVIL 218 >ref|ZP_00944004.1| Methyltransferase gidB [Ralstonia solanacearum UW551] ref|YP_002261214.1| methyltransferase gidb (glucose inhibited divisionprotein b) [Ralstonia solanacearum IPO1609] gb|EAP73510.1| Methyltransferase gidB [Ralstonia solanacearum UW551] emb|CAQ63159.1| methyltransferase gidb (glucose inhibited divisionprotein b) [Ralstonia solanacearum IPO1609] Length = 225 Score = 235 bits (600), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 129/225 (57%), Positives = 153/225 (68%), Gaps = 13/225 (5%) Query: 1 MSNT-ADLNHLTRTLKEGATAMGLTLSDAQLDKLMAYQALLAKWNKVYNLTALRDPAQMV 59 M+NT A L L GA A+GL+L AQLD+L+AYQALL KWN+VYNLTA+RD M+ Sbjct: 1 MANTHAALADARSELDAGARALGLSLDAAQLDRLLAYQALLGKWNRVYNLTAIRDAGDML 60 Query: 60 THHLLDSLSAV--------SAFTGAQRVLDVGAGGGLPGIVLAIWAAQAQPQMKITLVDT 111 THHLLDSL+AV A A RVLDVG+GGGLPGI LAI A P + +T+VD Sbjct: 61 THHLLDSLAAVPRIAERVRRAQPEAPRVLDVGSGGGLPGIPLAI----ACPDIGVTMVDI 116 Query: 112 VQKKTAFLNQVKAQLQLGNVTVVHARVEQLPIEQQYDVITSRAFAELKDFVTWSNHLLQQ 171 VQKKTAFL Q +A+L LGN VE+L Y VITSRAFAEL DFV + HLL Sbjct: 117 VQKKTAFLTQCRAELGLGNAQSHWGHVEKLADATGYGVITSRAFAELNDFVRLAGHLLAP 176 Query: 172 GGKYIALKGVLPQEEIDRLPPGWAVQQVQPLQVPGLDAERHLIFM 216 GG+ +A+KGV P EI RLP GWAV+ ++ L VPGL AERHLI + Sbjct: 177 GGRMVAMKGVHPAGEIARLPDGWAVESIERLTVPGLSAERHLIIL 221 >emb|CAQ17880.1| methyltransferase gidb (glucose inhibited divisionprotein b) [Ralstonia solanacearum MolK2] Length = 225 Score = 235 bits (599), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 128/225 (56%), Positives = 151/225 (67%), Gaps = 13/225 (5%) Query: 1 MSNT-ADLNHLTRTLKEGATAMGLTLSDAQLDKLMAYQALLAKWNKVYNLTALRDPAQMV 59 M+NT A L L GA A+GL+L AQLD+L AYQALL KWN+VYNLTA+RD M+ Sbjct: 1 MANTPAALADARSELDAGARALGLSLDAAQLDRLQAYQALLGKWNRVYNLTAIRDAGDML 60 Query: 60 THHLLDSLSAVSAFTG--------AQRVLDVGAGGGLPGIVLAIWAAQAQPQMKITLVDT 111 THHLLDSL+AV A RVLDVG+GGGLPGI LAI A P + +T+VD Sbjct: 61 THHLLDSLAAVPRIAERVRRVQPEAPRVLDVGSGGGLPGIPLAI----ACPDISVTMVDI 116 Query: 112 VQKKTAFLNQVKAQLQLGNVTVVHARVEQLPIEQQYDVITSRAFAELKDFVTWSNHLLQQ 171 VQKKTAFL Q +A+L LGN VE+L Y VITSRAFAEL DFV + HLL Sbjct: 117 VQKKTAFLTQCRAELGLGNAQSHWGHVEKLADATGYGVITSRAFAELNDFVRLAGHLLAP 176 Query: 172 GGKYIALKGVLPQEEIDRLPPGWAVQQVQPLQVPGLDAERHLIFM 216 GG+ +A+KGV P EI RLP GWAV+ ++ L VPGL AERHLI + Sbjct: 177 GGRMVAMKGVHPAAEIARLPDGWAVESIERLTVPGLSAERHLIIL 221 >gb|AEG67419.1| methyltransferase [Ralstonia solanacearum Po82] Length = 225 Score = 234 bits (597), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 124/211 (58%), Positives = 147/211 (69%), Gaps = 12/211 (5%) Query: 14 LKEGATAMGLTLSDAQLDKLMAYQALLAKWNKVYNLTALRDPAQMVTHHLLDSLSAV--- 70 L GA A+GL+L AQLD+L+AYQALL KWN+VYNLTA+RD M+THHLLDSL+AV Sbjct: 15 LDAGARALGLSLDAAQLDRLLAYQALLGKWNRVYNLTAIRDAGDMLTHHLLDSLAAVPRI 74 Query: 71 -----SAFTGAQRVLDVGAGGGLPGIVLAIWAAQAQPQMKITLVDTVQKKTAFLNQVKAQ 125 S A RVLDVG+GGGLPGI LAI A P + +T+VD VQKKTAFL Q +A+ Sbjct: 75 AERVRSVQPEAPRVLDVGSGGGLPGIPLAI----ACPDINVTMVDIVQKKTAFLTQCRAE 130 Query: 126 LQLGNVTVVHARVEQLPIEQQYDVITSRAFAELKDFVTWSNHLLQQGGKYIALKGVLPQE 185 L LGN VE+L Y VITSRAFAEL DFV + HLL GG+ +A+KGV P Sbjct: 131 LGLGNAQSHWGHVEKLADATGYGVITSRAFAELNDFVRLAGHLLAPGGRMVAMKGVHPAA 190 Query: 186 EIDRLPPGWAVQQVQPLQVPGLDAERHLIFM 216 EI RLP GWAV+ ++ L VPGL AERHLI + Sbjct: 191 EIARLPDGWAVESIERLAVPGLSAERHLITL 221