BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0489.p (234 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778132.1| transcription regulator protein [Herbaspiril... 468 e-130 ref|YP_004156268.1| GntR family transcriptional regulator [Vario... 182 2e-44 ref|YP_004618379.1| GntR family transcriptional regulator [Ramli... 181 8e-44 ref|YP_003694681.1| GntR family transcriptional regulator [Stark... 177 8e-43 ref|ZP_06841859.1| transcriptional regulator, GntR family [Burkh... 176 2e-42 ref|YP_001409451.1| GntR family transcriptional regulator [Xanth... 172 4e-41 ref|ZP_08137916.1| GntR family transcriptional regulator [Pseudo... 171 7e-41 ref|ZP_08628596.1| transcriptional regulator, GntR family [Brady... 168 5e-40 ref|YP_001156322.1| GntR family transcriptional regulator [Polyn... 167 8e-40 ref|XP_002538636.1| conserved hypothetical protein [Ricinus comm... 165 4e-39 >ref|YP_003778132.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ66224.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 468 bits (1204), Expect = e-130, Method: Compositional matrix adjust. Identities = 233/234 (99%), Positives = 233/234 (99%) Query: 1 MYKIDAPAQLIEQVYHAILDAICTGALAPNEKITQEGLAEQLGVSRQPILQAFQILKREG 60 MYKIDAPAQLIEQVYHAILDAICTGALAPNEKITQEGLAEQLGVSRQPILQAFQILKREG Sbjct: 1 MYKIDAPAQLIEQVYHAILDAICTGALAPNEKITQEGLAEQLGVSRQPILQAFQILKREG 60 Query: 61 FIEDAGRKGVMVTALDPQRLMQLYQVRAVLDGLAARSTAEQWKSDAALRAAGEREGRALI 120 FIEDAGRKGVMVTALDPQRLMQLYQVRAVLDGLAARSTAEQWKSDAALRAAGER GRALI Sbjct: 61 FIEDAGRKGVMVTALDPQRLMQLYQVRAVLDGLAARSTAEQWKSDAALRAAGERAGRALI 120 Query: 121 EAGRALADMRDLSARILADMDFHQFIYRSCGNPMIGQTTALHWQHIRRAMGAILSSEVRS 180 EAGRALADMRDLSARILADMDFHQFIYRSCGNPMIGQTTALHWQHIRRAMGAILSSEVRS Sbjct: 121 EAGRALADMRDLSARILADMDFHQFIYRSCGNPMIGQTTALHWQHIRRAMGAILSSEVRS 180 Query: 181 HLAVWEEHEAILQAMLEGRPALADKLARQHAESAAAHLARVLTSAHYADKRRQA 234 HLAVWEEHEAILQAMLEGRPALADKLARQHAESAAAHLARVLTSAHYADKRRQA Sbjct: 181 HLAVWEEHEAILQAMLEGRPALADKLARQHAESAAAHLARVLTSAHYADKRRQA 234 >ref|YP_004156268.1| GntR family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU38157.1| transcriptional regulator, GntR family [Variovorax paradoxus EPS] Length = 237 Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/224 (45%), Positives = 148/224 (66%), Gaps = 13/224 (5%) Query: 1 MYKIDAPAQLIEQVYHAILDAICTGALAPNEKITQEGLAEQLGVSRQPILQAFQILKREG 60 + I+ L++QVY A+L AI +G+LAP E+ITQE +A++L VSRQP+LQA ++LK++G Sbjct: 5 LVSIEVAPDLVDQVYRALLGAISSGSLAPGERITQEDIAQRLSVSRQPVLQALRLLKKDG 64 Query: 61 FIEDAGRKGVMVTALDPQRLMQLYQVRAVLDGLAARSTAEQ-WKSDAALRAAGEREGRAL 119 F+ DA +GV+V LD + + +YQVR VLD LAAR A+Q ++ D L Sbjct: 65 FVHDAPGRGVLVAPLDAEGMRHIYQVRGVLDVLAARLAAQQRFRIDP-----------KL 113 Query: 120 IEAGRALADMRDLSARILADMDFHQFIYRSCGNPMIGQTTALHWQHIRRAMGAILSSEVR 179 IE GR A R++ A I AD+ FH+ IY + GNP+IGQ+ HW+H+RRAMGA+L +E + Sbjct: 114 IERGRRAARGRNVEAMIDADVAFHRAIYDASGNPLIGQSADPHWRHLRRAMGAVLQAEPQ 173 Query: 180 SHLAVWEEHEAILQAMLEGRPALADKLARQHAESAAAHLARVLT 223 ++W+EHEAI A+ G P A +L+ +H A+ LAR LT Sbjct: 174 RE-SLWDEHEAIADAIAAGNPDRAARLSEEHVAQASEALARRLT 216 >ref|YP_004618379.1| GntR family transcriptional regulator [Ramlibacter tataouinensis TTB310] gb|AEG92360.1| transcriptional regulator, GntR family-like protein [Ramlibacter tataouinensis TTB310] Length = 227 Score = 181 bits (459), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 112/236 (47%), Positives = 147/236 (62%), Gaps = 18/236 (7%) Query: 1 MYKIDAPAQLIEQVYHAILDAICTGALAPNEKITQEGLAEQLGVSRQPILQAFQILKREG 60 + K+DA L+EQVY +LDAI G+LAP +ITQE +AEQL VSRQP+LQA ++LK++G Sbjct: 5 LLKLDAAPDLVEQVYRRLLDAISDGSLAPGGRITQEDIAEQLAVSRQPVLQALRLLKKDG 64 Query: 61 FIEDAGRKGVMVTALDPQRLMQLYQVRAVLDGLAARSTAEQ-WKSDAALRAAGEREGRAL 119 F+ DA +GV V LDP + Q+YQVR LD LAAR A+Q W+ + L Sbjct: 65 FVLDAPGRGVQVAPLDPAWIAQVYQVRGALDALAARLAAQQRWRMEP-----------RL 113 Query: 120 IEAGRALADMRDLSARILADMDFHQFIYRSCGNPMIGQTTALHWQHIRRAMGAILSSEVR 179 IE GR R++ A I AD+ FH IY + GNP+IGQ+ LHW+H+RR MGA+L E R Sbjct: 114 IEQGRKATRGRNVQAMIDADLAFHNAIYAASGNPLIGQSAQLHWRHLRRVMGAVLREE-R 172 Query: 180 SHLAVWEEHEAILQAMLEGRPALADKLARQHAESA----AAHLARVLTSAHYADKR 231 AVW+EHEAI +A+ G A +L +H+ A AA L VL + DKR Sbjct: 173 QREAVWDEHEAIARAIARGDGDAAARLVEEHSRQASDNLAARLGMVLKTGE-GDKR 227 >ref|YP_003694681.1| GntR family transcriptional regulator [Starkeya novella DSM 506] gb|ADH90062.1| transcriptional regulator, GntR family [Starkeya novella DSM 506] Length = 223 Score = 177 bits (450), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 91/210 (43%), Positives = 130/210 (61%), Gaps = 7/210 (3%) Query: 1 MYKIDAPAQLIEQVYHAILDAICTGALAPNEKITQEGLAEQLGVSRQPILQAFQILKREG 60 M ++AP L++Q Y ILDA+C G P E++TQE +A +L VSRQP+ A +LK +G Sbjct: 1 MESLEAPKSLVDQAYEVILDALCDGTFKPGERLTQEDIAARLKVSRQPVTHALVVLKAQG 60 Query: 61 FIEDAGRKGVMVTALDPQRLMQLYQVRAVLDGLAARSTAEQWKSDAALRAAGEREGRALI 120 F+ +GR+G++VT +D +YQ R+ ++ LA R + A LR GR+LI Sbjct: 61 FLAQSGRRGLIVTPVDAAFFEAIYQFRSAVEPLAVRLATPRLTKQAILR------GRSLI 114 Query: 121 EAGRALADMRDLSARILADMDFHQFIYRSCGNPMIGQTTALHWQHIRRAMGAILSSEVRS 180 E GR + D A + ADMDFH FIY GNP++G+T LHW+H+RRAMG +L S Sbjct: 115 EHGRNMVVAGDARAGLQADMDFHSFIYDLSGNPIVGETMRLHWRHLRRAMGQVLRYPGMS 174 Query: 181 HLAVWEEHEAILQAMLEGRPALADKLARQH 210 ++VW+EH IL+AM+ G A +L R+H Sbjct: 175 -ISVWQEHGRILEAMIRGDAEGAAELMRRH 203 >ref|ZP_06841859.1| transcriptional regulator, GntR family [Burkholderia sp. Ch1-1] gb|EFG70384.1| transcriptional regulator, GntR family [Burkholderia sp. Ch1-1] Length = 230 Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 98/223 (43%), Positives = 138/223 (61%), Gaps = 17/223 (7%) Query: 1 MYKIDAPAQLIEQVYHAILDAICTGALAPNEKITQEGLAEQLGVSRQPILQAFQILKREG 60 + KI A +++VY +LDAI G++AP +I QE +AEQL VSR P+LQAF++LK++G Sbjct: 5 LLKIQARTDYVDEVYRVLLDAISEGSIAPGTRIVQEEIAEQLAVSRSPVLQAFRLLKKDG 64 Query: 61 FIEDAGRKGVMVTALDPQRLMQLYQVRAVLDGLAARSTA-EQWKSDAALRAAGEREGRAL 119 +EDA +G+ VT LD R+ LY++R LD LAAR A ++ K D +AL Sbjct: 65 LVEDAPGRGLQVTPLDATRIGHLYELRGALDSLAARLAARKKVKID-----------KAL 113 Query: 120 IEAGRALADMRDLSARILADMDFHQFIYRSCGNPMIGQTTALHWQHIRRAMGAI--LSSE 177 + GR L+ D+ A I ADM FH IY + GNP+I + LHW H+RR MGA+ ++ + Sbjct: 114 VATGRKLSKGEDVRAMIEADMAFHTAIYTASGNPLIVDSARLHWMHLRRVMGAVHQVTGQ 173 Query: 178 VRSHLAVWEEHEAILQAMLEGRPALADKLARQHAESAAAHLAR 220 +S VW+EH AI A+ +G LA KL+ QH E A +L R Sbjct: 174 RKS---VWDEHAAIADAIAQGDEELAAKLSLQHTEVARENLVR 213 >ref|YP_001409451.1| GntR family transcriptional regulator [Xanthobacter autotrophicus Py2] gb|ABS70215.1| transcriptional regulator, GntR family [Xanthobacter autotrophicus Py2] Length = 231 Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 93/210 (44%), Positives = 125/210 (59%), Gaps = 7/210 (3%) Query: 1 MYKIDAPAQLIEQVYHAILDAICTGALAPNEKITQEGLAEQLGVSRQPILQAFQILKREG 60 M + AP +L+EQ Y ILDAIC G L P E++TQE +A +L VSRQP+ A IL+ +G Sbjct: 13 MESLAAPKRLVEQTYEVILDAICDGTLKPGERLTQEDIAARLNVSRQPVTHALVILRAQG 72 Query: 61 FIEDAGRKGVMVTALDPQRLMQLYQVRAVLDGLAARSTAEQWKSDAALRAAGEREGRALI 120 F+ + G++GV V + P+ L +Y+ R+ ++ LAA + A L+ R GR L+ Sbjct: 73 FVTEVGKRGVAVAPVQPELLKAIYEFRSAVEPLAAE------LATANLQPQHIRHGRDLL 126 Query: 121 EAGRALADMRDLSARILADMDFHQFIYRSCGNPMIGQTTALHWQHIRRAMGAILSSEVRS 180 GR LA D + ADMDFH FIY GNP+I T L+WQH+RR MG ILS S Sbjct: 127 AHGRNLALAGDRKGVVQADMDFHSFIYELSGNPLIIDTMRLNWQHLRRGMGEILSYPGLS 186 Query: 181 HLAVWEEHEAILQAMLEGRPALADKLARQH 210 + VW EHE IL+AM+ G LA + H Sbjct: 187 -IRVWREHEEILEAMISGDAKLAARSMHSH 215 >ref|ZP_08137916.1| GntR family transcriptional regulator [Pseudomonas sp. TJI-51] gb|EGC00829.1| GntR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 236 Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 93/220 (42%), Positives = 137/220 (62%), Gaps = 15/220 (6%) Query: 1 MYKIDAPAQLIEQVYHAILDAICTGALAPNEKITQEGLAEQLGVSRQPILQAFQILKREG 60 + +I + +++VY A+LDAI G+LAP ++TQE +AEQ+ +SR P+LQA ++LK++G Sbjct: 20 LKRIQSRTDYVDEVYKALLDAISDGSLAPGARLTQEEIAEQMNISRSPVLQALRLLKKDG 79 Query: 61 FIEDAGRKGVMVTALDPQRLMQLYQVRAVLDGLAARSTAEQ-WKSDAALRAAGEREGRAL 119 ++DA +G++VT L + LYQ+R LD LAA+ AEQ ++ D + L Sbjct: 80 LVQDAPGRGLLVTPLTTDSIRNLYQIRGALDNLAAKMAAEQKFQMD-----------QTL 128 Query: 120 IEAGRALADMRDLSARILADMDFHQFIYRSCGNPMIGQTTALHWQHIRRAMGAIL-SSEV 178 I+ GR + RD+ A I ADM FH IY + GNP+I Q+ ++W H+RRAMGA+L SSE Sbjct: 129 IKRGRKASQGRDIKAMIDADMAFHTAIYEASGNPLIAQSAQVYWVHLRRAMGAVLQSSEQ 188 Query: 179 RSHLAVWEEHEAILQAMLEGRPALADKLARQHAESAAAHL 218 R A+W EHEAI +A+ G A +L H A +L Sbjct: 189 RE--AIWNEHEAIAKAIAAGDVVAAGELTDVHTTHARKNL 226 >ref|ZP_08628596.1| transcriptional regulator, GntR family [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08661.1| transcriptional regulator, GntR family [Bradyrhizobiaceae bacterium SG-6C] Length = 220 Score = 168 bits (426), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 88/210 (41%), Positives = 125/210 (59%), Gaps = 8/210 (3%) Query: 1 MYKIDAPAQLIEQVYHAILDAICTGALAPNEKITQEGLAEQLGVSRQPILQAFQILKREG 60 + + P L++QVY ILDA+C G P E++TQE +A +L VSRQP+ A +LK +G Sbjct: 2 LESLTPPKSLVDQVYEVILDALCDGTFKPGERLTQESIAARLNVSRQPVTHALAVLKAQG 61 Query: 61 FIEDAGRKGVMVTALDPQRLMQLYQVRAVLDGLAARSTAEQWKSDAALRAAGEREGRALI 120 F+ GR+G+ VTA+DP +YQ+R+ ++ LA + + D+ R GRALI Sbjct: 62 FLAQ-GRQGLTVTAVDPGFFAAIYQIRSAVEPLAVKLATPRLTKDSVAR------GRALI 114 Query: 121 EAGRALADMRDLSARILADMDFHQFIYRSCGNPMIGQTTALHWQHIRRAMGAILSSEVRS 180 + G A D A + ADMDFH FIY GNP+I +T LHW+H+RRAM +L S Sbjct: 115 DHGAAQVAAGDSRASLQADMDFHSFIYELSGNPLIAETMRLHWRHLRRAMAEVLRHPGMS 174 Query: 181 HLAVWEEHEAILQAMLEGRPALADKLARQH 210 ++VW+EH IL M+ G A +L R+H Sbjct: 175 -ISVWKEHGRILDEMIRGDGDAAAELMRRH 203 >ref|YP_001156322.1| GntR family transcriptional regulator [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gb|ABP34758.1| transcriptional regulator, GntR family [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 221 Score = 167 bits (424), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 96/228 (42%), Positives = 143/228 (62%), Gaps = 16/228 (7%) Query: 1 MYKIDAPAQLIEQVYHAILDAICTGALAPNEKITQEGLAEQLGVSRQPILQAFQILKREG 60 + K+ A +E VY A+LDAI G+L P +ITQE +AEQ+ VSR P+LQA ++LK +G Sbjct: 5 LNKLPARTDYVEAVYKALLDAISDGSLPPGTRITQEEIAEQMNVSRLPVLQALRMLKNDG 64 Query: 61 FIEDAGRKGVMVTALDPQRLMQLYQVRAVLDGLAARSTAEQWKSDAALRAAGEREGRALI 120 F+EDA +G+ VTAL+ + + +LY++R LD LAA+ A++ + + ALI Sbjct: 65 FVEDAPGRGLQVTALNIEWIDKLYEIRGALDSLAAKLAAQK-------KCIID---PALI 114 Query: 121 EAGRALADMRDLSARILADMDFHQFIYRSCGNPMIGQTTALHWQHIRRAMGAILSSEVRS 180 + GRA+++ ++ A I ADM FH IY + NP+I ++ LHW H+RR MGA+L S RS Sbjct: 115 KNGRAISEKGNVKALIDADMAFHSAIYEASENPLIAKSAHLHWVHLRRVMGAVLQSSQRS 174 Query: 181 HLAVWEEHEAILQAMLEGRPALADKLARQHAESAAAH----LARVLTS 224 A+W+EH+AI A+ G A +L+ HA A + L+ VLT+ Sbjct: 175 --AIWDEHQAIADAIKNGDEKKAAELSELHAMRARKNLIHQLSEVLTN 220 >ref|XP_002538636.1| conserved hypothetical protein [Ricinus communis] gb|EEF23748.1| conserved hypothetical protein [Ricinus communis] Length = 241 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 92/216 (42%), Positives = 130/216 (60%), Gaps = 11/216 (5%) Query: 3 KIDAPAQLIEQVYHAILDAICTGALAPNEKITQEGLAEQLGVSRQPILQAFQILKREGFI 62 K+ +E+VY + DAI G+LAP ++TQE +AEQ VSR P+LQA ++LK++G + Sbjct: 7 KLQVRPDYVEEVYRVLADAISDGSLAPGTRLTQEEIAEQFAVSRSPVLQALRLLKKDGLV 66 Query: 63 EDAGRKGVMVTALDPQRLMQLYQVRAVLDGLAARSTAEQWKSDAALRAAGEREGRALIEA 122 +DA +GV+V LD + LYQVR LD LAAR AE+ G ALI Sbjct: 67 QDAPGRGVLVAPLDVEWTSHLYQVRGALDTLAARLAAER----------GAVIDSALIMR 116 Query: 123 GRALADMRDLSARILADMDFHQFIYRSCGNPMIGQTTALHWQHIRRAMGAILSSEVRSHL 182 GR ++ +D+ A I AD+ FH IY + GNP+I ++ LHW H+RR MGA+L S R Sbjct: 117 GRLVSKGKDVKAMIDADIAFHSAIYEASGNPLIVESAQLHWVHLRRVMGAVLQSS-RLRD 175 Query: 183 AVWEEHEAILQAMLEGRPALADKLARQHAESAAAHL 218 ++W+EH+AI +A+ PA A +L H SA +L Sbjct: 176 SIWDEHQAIAEAIAARDPARAAELTELHTSSARQNL 211