BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0462.p (492 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778110.1| two component sensor histidine kinase [Herba... 987 0.0 ref|YP_983592.1| integral membrane sensor signal transduction hi... 450 e-124 ref|YP_524031.1| periplasmic sensor signal transduction histidin... 426 e-117 ref|YP_004620572.1| histidine kinase [Ramlibacter tataouinensis ... 425 e-116 ref|YP_157534.1| sensory transduction histidine kinase [Aromatol... 411 e-112 ref|YP_547969.1| periplasmic sensor signal transduction histidin... 407 e-111 ref|ZP_04762141.1| histidine kinase [Acidovorax delafieldii 2AN]... 400 e-109 ref|YP_002942884.1| histidine kinase [Variovorax paradoxus S110]... 397 e-108 ref|YP_969246.1| integral membrane sensor signal transduction hi... 394 e-107 ref|YP_285019.1| sensor histidine kinase [Dechloromonas aromatic... 381 e-103 >ref|YP_003778110.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ66202.1| two component sensor histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 492 Score = 987 bits (2551), Expect = 0.0, Method: Compositional matrix adjust. Identities = 492/492 (100%), Positives = 492/492 (100%) Query: 1 MLNAIEHHPTPHAAPARPSGYLGLSFRQLLLAAFLLIAALLSGTSIHALFTLDRMSANSR 60 MLNAIEHHPTPHAAPARPSGYLGLSFRQLLLAAFLLIAALLSGTSIHALFTLDRMSANSR Sbjct: 1 MLNAIEHHPTPHAAPARPSGYLGLSFRQLLLAAFLLIAALLSGTSIHALFTLDRMSANSR 60 Query: 61 ETARQAVQLTEAAQRLAERTVAMERSARQYLVLDDPAFHDRFNEARDQARQALGELADSL 120 ETARQAVQLTEAAQRLAERTVAMERSARQYLVLDDPAFHDRFNEARDQARQALGELADSL Sbjct: 61 ETARQAVQLTEAAQRLAERTVAMERSARQYLVLDDPAFHDRFNEARDQARQALGELADSL 120 Query: 121 PKAPREMFGQWSVYVDEAAGVLDADSRKDKGEQARLFQDFARLPALNERIALESRREVDR 180 PKAPREMFGQWSVYVDEAAGVLDADSRKDKGEQARLFQDFARLPALNERIALESRREVDR Sbjct: 121 PKAPREMFGQWSVYVDEAAGVLDADSRKDKGEQARLFQDFARLPALNERIALESRREVDR 180 Query: 181 RNNALSAALEQQRQMLTAQVVGAIVLAVLLAFCFGLWLSRPMARLEQAIGRLGDNRFDQP 240 RNNALSAALEQQRQMLTAQVVGAIVLAVLLAFCFGLWLSRPMARLEQAIGRLGDNRFDQP Sbjct: 181 RNNALSAALEQQRQMLTAQVVGAIVLAVLLAFCFGLWLSRPMARLEQAIGRLGDNRFDQP 240 Query: 241 IDVRGPADIRRLGQQLDWLRQRLADLEAEKSRFLRHVSHELKTPLAALCEGAALLDDGVA 300 IDVRGPADIRRLGQQLDWLRQRLADLEAEKSRFLRHVSHELKTPLAALCEGAALLDDGVA Sbjct: 241 IDVRGPADIRRLGQQLDWLRQRLADLEAEKSRFLRHVSHELKTPLAALCEGAALLDDGVA 300 Query: 301 GQLTDSQREIARILRQNTQSLQTQIEDLLRYNEVSFDAQRIHPVPVDLRALLHKVIDDQR 360 GQLTDSQREIARILRQNTQSLQTQIEDLLRYNEVSFDAQRIHPVPVDLRALLHKVIDDQR Sbjct: 301 GQLTDSQREIARILRQNTQSLQTQIEDLLRYNEVSFDAQRIHPVPVDLRALLHKVIDDQR 360 Query: 361 LQWLARELKVEIEGAARTVVVDPEKMAIVLANLLSNAVRFSPQGGFIRFLLSEAPGLVRV 420 LQWLARELKVEIEGAARTVVVDPEKMAIVLANLLSNAVRFSPQGGFIRFLLSEAPGLVRV Sbjct: 361 LQWLARELKVEIEGAARTVVVDPEKMAIVLANLLSNAVRFSPQGGFIRFLLSEAPGLVRV 420 Query: 421 ECVDQGPGVAPTDAARIFEPFYQGLNQPTAARRGNGIGLSVVREYVQAHSGKVYLVPREG 480 ECVDQGPGVAPTDAARIFEPFYQGLNQPTAARRGNGIGLSVVREYVQAHSGKVYLVPREG Sbjct: 421 ECVDQGPGVAPTDAARIFEPFYQGLNQPTAARRGNGIGLSVVREYVQAHSGKVYLVPREG 480 Query: 481 GAHFRIELPDEK 492 GAHFRIELPDEK Sbjct: 481 GAHFRIELPDEK 492 >ref|YP_983592.1| integral membrane sensor signal transduction histidine kinase [Polaromonas naphthalenivorans CJ2] gb|ABM38671.1| integral membrane sensor signal transduction histidine kinase [Polaromonas naphthalenivorans CJ2] Length = 487 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 243/484 (50%), Positives = 321/484 (66%), Gaps = 7/484 (1%) Query: 9 PTPHAAPARPSGYLG-LSFRQLLLAAFLLIAALLSGTSIHALFTLDRMSANSRETARQAV 67 P P A P L SFRQLL+ AFLLIA LL S+ ALF L ++ SR+ A +A+ Sbjct: 3 PKPAALRPTPKPMLQRFSFRQLLVIAFLLIAVLLGAASLRALFALQDLTVQSRDNAARAL 62 Query: 68 QLTEAAQRLAERTVAMERSARQYLVLDDPAFHDRF-NEARDQARQALGELA-DSLPKAPR 125 L+ AAQ L ER+++MERS+RQ +VLDD RF +EARD A L LA + +P A Sbjct: 63 DLSGAAQSLRERSLSMERSSRQSVVLDDRVLRQRFRDEARD-ATSILTRLAREDIPAAKA 121 Query: 126 EMFGQWSVYVDEAAGVLDADSRKDKGEQARLFQDFARLPALNERIALESRREVDRRNNAL 185 + W ++D +L + +L Q+F L +N IA++ ++ + +RN +L Sbjct: 122 Q---PWRTHLDTMLDLLTGPPDTALEREHQLTQEFRELEGINTAIAMQVQQTIQQRNQSL 178 Query: 186 SAALEQQRQMLTAQVVGAIVLAVLLAFCFGLWLSRPMARLEQAIGRLGDNRFDQPIDVRG 245 LE RQ L QV AIVL V +A FG+W +RP+ RLE AI LG+NR DQ I + G Sbjct: 179 QEKLETSRQHLAQQVTWAIVLTVFMALAFGVWFTRPLKRLENAIIGLGENRLDQVIAIHG 238 Query: 246 PADIRRLGQQLDWLRQRLADLEAEKSRFLRHVSHELKTPLAALCEGAALLDDGVAGQLTD 305 PAD+ +G++L+WLR RL++L+A+KSRFLRH+SHELKTPLA+L EG +LL+DGVAG L+ Sbjct: 239 PADLALVGERLNWLRLRLSELDADKSRFLRHISHELKTPLASLREGVSLLEDGVAGPLSH 298 Query: 306 SQREIARILRQNTQSLQTQIEDLLRYNEVSFDAQRIHPVPVDLRALLHKVIDDQRLQWLA 365 QREIA+IL+ NT LQ+QIEDLLR+N +F+A+++H +DL L+ +D QRLQW A Sbjct: 299 DQREIAQILKHNTGVLQSQIEDLLRFNTAAFEARQLHRQTIDLLQLIEDQVDAQRLQWRA 358 Query: 366 RELKVEIEGAARTVVVDPEKMAIVLANLLSNAVRFSPQGGFIRFLLSEAPGLVRVECVDQ 425 REL V I G + VDPEK+ LANLLSNA+R+SP G I LS+ PGLV ++ DQ Sbjct: 359 RELTVNISGEPLKMEVDPEKIGTALANLLSNAIRYSPLKGTIELALSQQPGLVHIDIRDQ 418 Query: 426 GPGVAPTDAARIFEPFYQGLNQPTAARRGNGIGLSVVREYVQAHSGKVYLVPREGGAHFR 485 G GVAP D RIFEPFY+G QP RG+GIGLS+V EY+ AH G++ L+P+E G HFR Sbjct: 419 GVGVAPADRERIFEPFYRGERQPKDGVRGSGIGLSIVHEYIAAHGGRIELLPQETGTHFR 478 Query: 486 IELP 489 IE P Sbjct: 479 IEFP 482 >ref|YP_524031.1| periplasmic sensor signal transduction histidine kinase [Rhodoferax ferrireducens T118] gb|ABD70500.1| periplasmic sensor signal transduction histidine kinase [Rhodoferax ferrireducens T118] Length = 473 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 240/467 (51%), Positives = 320/467 (68%), Gaps = 4/467 (0%) Query: 24 LSFRQLLLAAFLLIAALLSGTSIHALFTLDRMSANSRETARQAVQLTEAAQRLAERTVAM 83 SFRQLL+ AFLLIAALL S+ ALFTL+ ++ SR+ A Q+++L+ AQ L+E +V+M Sbjct: 5 FSFRQLLVIAFLLIAALLGAASLRALFTLEELTLQSRDGASQSLELSRLAQSLSELSVSM 64 Query: 84 ERSARQYLVLDDPAFHDRFNEARDQARQALGELADSLPKA-PREMFGQWSVYVDEAAGVL 142 ER++RQ +VLDD RF+ DQAR+A LA + P + QW ++ A +L Sbjct: 65 ERTSRQSVVLDDRVLRVRFS---DQAREAATLLASLTAQGLPSGLKQQWQAHLQAAGDLL 121 Query: 143 DADSRKDKGEQARLFQDFARLPALNERIALESRREVDRRNNALSAALEQQRQMLTAQVVG 202 + ++ Q+F L +N IA++ ++ + +RN AL A LE R L QV Sbjct: 122 TGAPDTALERERQIAQEFRSLDHVNSAIAVQVQKTIQQRNQALEAKLEDSRSHLAQQVTW 181 Query: 203 AIVLAVLLAFCFGLWLSRPMARLEQAIGRLGDNRFDQPIDVRGPADIRRLGQQLDWLRQR 262 AIVLAV +A FG+W + P+ RLE AI LG+NR DQ I +RGPAD+ +GQ+L+WLR R Sbjct: 182 AIVLAVAMALAFGIWFTVPLKRLEHAIVGLGENRLDQVIAIRGPADLAMVGQRLNWLRLR 241 Query: 263 LADLEAEKSRFLRHVSHELKTPLAALCEGAALLDDGVAGQLTDSQREIARILRQNTQSLQ 322 L +L+A+KSRFLRH+SHELKTPLA+L EG +LL+DGVAG+L+ QREIA+ILR N LQ Sbjct: 242 LVELDADKSRFLRHISHELKTPLASLREGVSLLEDGVAGELSPEQREIAQILRHNAGVLQ 301 Query: 323 TQIEDLLRYNEVSFDAQRIHPVPVDLRALLHKVIDDQRLQWLARELKVEIEGAARTVVVD 382 QIEDLLR+N +F+A+++H +L L+ +D QRLQW AREL V + G V +D Sbjct: 302 GQIEDLLRFNTAAFEARQLHRRTTNLLELVEAQVDAQRLQWRARELSVIVVGKPILVELD 361 Query: 383 PEKMAIVLANLLSNAVRFSPQGGFIRFLLSEAPGLVRVECVDQGPGVAPTDAARIFEPFY 442 PEK+ VLANLLSNA+R+SP G IR LS+ PGLVR++ DQG GVA D RIFEPFY Sbjct: 362 PEKIGTVLANLLSNAIRYSPLKGDIRLELSKLPGLVRIDIHDQGVGVALADRERIFEPFY 421 Query: 443 QGLNQPTAARRGNGIGLSVVREYVQAHSGKVYLVPREGGAHFRIELP 489 +G QP+ RG+GIGLS+V EY+ AH G++ L+P +GGAHFRIE P Sbjct: 422 RGERQPSDVVRGSGIGLSIVHEYIAAHGGRIELLPDQGGAHFRIEFP 468 >ref|YP_004620572.1| histidine kinase [Ramlibacter tataouinensis TTB310] gb|AEG94553.1| candidate histidine kinase, classic [Ramlibacter tataouinensis TTB310] Length = 479 Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust. Identities = 237/474 (50%), Positives = 309/474 (65%), Gaps = 5/474 (1%) Query: 18 PSGYLGL-SFRQLLLAAFLLIAALLSGTSIHALFTLDRMSANSRETARQAVQLTEAAQRL 76 PS GL SFRQLLL AFLLI LL GT++ A+ LDR+ A S + +A++L +AQ L Sbjct: 6 PSLRPGLVSFRQLLLVAFLLIGVLLGGTALRAVVILDRLMAQSGDETTRALELNASAQAL 65 Query: 77 AERTVAMERSARQYLVLDDPAFHDRFNEARDQARQALGELAD-SLPKAPREMFGQWSVYV 135 RTV MER+ARQ L+ +D RF EA D AR AL + + L A + G W + Sbjct: 66 TARTVDMERAARQSLIFNDRLLRRRFEEATDGARDALRRMTEQGLNPA---LAGPWLAQL 122 Query: 136 DEAAGVLDADSRKDKGEQARLFQDFARLPALNERIALESRREVDRRNNALSAALEQQRQM 195 + A +L + + + F LN IA E + ++ RN AL L+ R Sbjct: 123 ELVANLLPGPAETALDRERAVAAAFREFDTLNTGIAREVQALIEGRNTALRERLDASRAR 182 Query: 196 LTAQVVGAIVLAVLLAFCFGLWLSRPMARLEQAIGRLGDNRFDQPIDVRGPADIRRLGQQ 255 L QV+ I+LA +LA GLWL+RP RLE+AI LG+NR D+PID+ GPAD+RR+GQQ Sbjct: 183 LMQQVLLTILLAAVLATGLGLWLARPFKRLERAIVGLGENRLDEPIDIEGPADVRRVGQQ 242 Query: 256 LDWLRQRLADLEAEKSRFLRHVSHELKTPLAALCEGAALLDDGVAGQLTDSQREIARILR 315 LDWLR RL +L+A+K+RFLRH+SHELKTPLAA+ EG ALL+DGVAG+L Q+E+ RIL Sbjct: 243 LDWLRLRLTELDADKARFLRHISHELKTPLAAMREGVALLEDGVAGELNSRQQEVMRILH 302 Query: 316 QNTQSLQTQIEDLLRYNEVSFDAQRIHPVPVDLRALLHKVIDDQRLQWLARELKVEIEGA 375 NT LQ QIE LLR+N +F+A+++ +DL AL+ ++ QRLQW A L+VE+ G Sbjct: 303 HNTSVLQEQIEALLRFNAAAFEARQLKRRRIDLLALVQHQVEAQRLQWQANALQVEVRGE 362 Query: 376 ARTVVVDPEKMAIVLANLLSNAVRFSPQGGFIRFLLSEAPGLVRVECVDQGPGVAPTDAA 435 + VD +K+ +ANLLSNA+RFSP GG + LS +PGL + DQGPGVA D Sbjct: 363 PLVLPVDADKLGTAVANLLSNAIRFSPPGGSVVVELSHSPGLACIAIRDQGPGVAEADRP 422 Query: 436 RIFEPFYQGLNQPTAARRGNGIGLSVVREYVQAHSGKVYLVPREGGAHFRIELP 489 RIFEPFY+G QP A RG GIGLS+V+EY+ AH G+V L+ + GAHFRIELP Sbjct: 423 RIFEPFYRGERQPQDAVRGTGIGLSIVQEYIAAHGGRVVLMDQGEGAHFRIELP 476 >ref|YP_157534.1| sensory transduction histidine kinase [Aromatoleum aromaticum EbN1] emb|CAI06633.1| Sensory transduction histidine kinase [Aromatoleum aromaticum EbN1] Length = 509 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 221/471 (46%), Positives = 305/471 (64%), Gaps = 7/471 (1%) Query: 24 LSFRQLLLAAFLLIAALLSGTSIHALFTLDRMSANSRETARQAVQLTEAAQRLAERTVAM 83 LSF LLA+FLLIAA+L ++ L TL+ ++A SRE A+ A+ + A Q L ERTV + Sbjct: 44 LSFSSTLLASFLLIAAILGTAALGGLLTLEDLAARSREGAKHALGFSSALQELGERTVDL 103 Query: 84 ERSARQYLVLDDPAFHDRFNEARDQARQALGELADSLPKAPREMFGQWSVYVDEAAGVLD 143 ERSARQ+LVL DP +RF +ARD + AL +A + + QWS + A L+ Sbjct: 104 ERSARQFLVLGDPVLLERFEQARDDSMTALVWIAGLGSTKSQRLVNQWSDAAERVAAALN 163 Query: 144 ADSRKDKGEQARLFQDFARLPALNERIALESRREVDRRNNALSAALEQQRQMLTAQVVGA 203 + D QA LP LNE++A E R +++ + L L+ R+ L ++ A Sbjct: 164 TRAGADVALQA-----LGELPVLNEQLAAELRLQLEAESKRLLDELDGNREQLAWHLLVA 218 Query: 204 IVLAVLLAFCFGLWLSRPMARLEQAIGRLGDNRFDQPIDVRGPADIRRLGQQLDWLRQRL 263 + A LLA G W+ RP+ R+E AI LG++RFD+P+ + GPAD+RR+G++LDWLR RL Sbjct: 219 VTAAFLLAALTGWWVLRPLTRVEGAIEALGESRFDEPVIIGGPADLRRVGRRLDWLRVRL 278 Query: 264 ADLEAEKSRFLRHVSHELKTPLAALCEGAALLDDGVAGQLTDSQREIARILRQNTQSLQT 323 ADLEA ++R LRHVSHELKTPLA+L EG ALL DGV G+LT Q E+ IL NT++LQ Sbjct: 279 ADLEANRTRVLRHVSHELKTPLASLREGIALLKDGVVGELTAGQHEVVGILEHNTRALQL 338 Query: 324 QIEDLLRYNEVSFDAQRIHPVPVDLRALLHKVIDDQRLQWLARELKVEIE--GAARTVVV 381 +IE LL YN FDA+ + V LR L+ V+ +Q+LQ +R L V+I+ G + Sbjct: 339 RIEGLLGYNAAVFDARSLKRRKVALRPLVEAVVAEQQLQIQSRNLHVDIDVNGNIPPLSA 398 Query: 382 DPEKMAIVLANLLSNAVRFSPQGGFIRFLLSEAPGLVRVECVDQGPGVAPTDAARIFEPF 441 DP+K+ I LANL++NA+ FSP GG +R ++ V ++C+D+GPGV ++ RIFEPF Sbjct: 399 DPDKLRIALANLVANAISFSPHGGKVRLKIARQLRDVTIDCIDEGPGVPENESERIFEPF 458 Query: 442 YQGLNQPTAARRGNGIGLSVVREYVQAHSGKVYLVPREGGAHFRIELPDEK 492 YQG QP A R G+G+GLS+VRE++ AH GK+ L+P GAHFRI LP+E Sbjct: 459 YQGSRQPAAPRHGSGLGLSIVREFIDAHGGKIELLPTSTGAHFRIALPNES 509 >ref|YP_547969.1| periplasmic sensor signal transduction histidine kinase [Polaromonas sp. JS666] gb|ABE43071.1| periplasmic sensor signal transduction histidine kinase [Polaromonas sp. JS666] Length = 473 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 233/468 (49%), Positives = 317/468 (67%), Gaps = 6/468 (1%) Query: 24 LSFRQLLLAAFLLIAALLSGTSIHALFTLDRMSANSRETARQAVQLTEAAQRLAERTVAM 83 SFRQLL+ AFLLIAALL S+ ALFTL+ ++ SR++A +A++L AAQ L ER+V+M Sbjct: 5 FSFRQLLVIAFLLIAALLGAASLRALFTLEDLTQQSRDSAARALELGSAAQSLGERSVSM 64 Query: 84 ERSARQYLVLDDPAFHDRFNEARDQARQALGELADSLPK--APREMFGQWSVYVDEAAGV 141 ER++RQ +VLDD +RF+ D+ R++ L DSL + P QW ++ A + Sbjct: 65 ERTSRQSVVLDDRVLRERFD---DEVRESTAVL-DSLVRNGIPAVKARQWRAHLQTIASL 120 Query: 142 LDADSRKDKGEQARLFQDFARLPALNERIALESRREVDRRNNALSAALEQQRQMLTAQVV 201 + + +L Q+F L +N IA++ ++ + +RN L LE RQ L QV Sbjct: 121 MSGPPATALDRERQLAQEFRELEGVNATIAMQVQQAIQQRNKLLEGRLEASRQRLAQQVG 180 Query: 202 GAIVLAVLLAFCFGLWLSRPMARLEQAIGRLGDNRFDQPIDVRGPADIRRLGQQLDWLRQ 261 AI LAV++A FG+W + P+ RLE AI LG+NR DQ I ++GPAD+ +GQ+L+WLR Sbjct: 181 WAIALAVVMALAFGIWFTLPLKRLEHAIVGLGENRLDQVIAIQGPADLALVGQRLNWLRL 240 Query: 262 RLADLEAEKSRFLRHVSHELKTPLAALCEGAALLDDGVAGQLTDSQREIARILRQNTQSL 321 RL +L+A+KSRFLRH+SHELKTPLA+L EG +LL+DGVAG L+D QREIA+IL+ NT L Sbjct: 241 RLVELDADKSRFLRHISHELKTPLASLREGVSLLEDGVAGPLSDDQREIAQILKHNTGVL 300 Query: 322 QTQIEDLLRYNEVSFDAQRIHPVPVDLRALLHKVIDDQRLQWLARELKVEIEGAARTVVV 381 Q QIEDLLR+N +F+A+++ +DL L+ + +D QRLQW AREL V + G + + Sbjct: 301 QGQIEDLLRFNTAAFEARQLRRQTLDLLQLMEEQVDAQRLQWRARELSVAVVGEPLRMEL 360 Query: 382 DPEKMAIVLANLLSNAVRFSPQGGFIRFLLSEAPGLVRVECVDQGPGVAPTDAARIFEPF 441 DPEK+ LANLLSNA+R+SP G IR L PG VR++ DQG GVA D RIFEPF Sbjct: 361 DPEKIGTALANLLSNAIRYSPPRGMIRLELVALPGRVRIDIHDQGIGVAAADRERIFEPF 420 Query: 442 YQGLNQPTAARRGNGIGLSVVREYVQAHSGKVYLVPREGGAHFRIELP 489 ++G QP RG+GIGLS+V EY+ AH G++ L+P + GAH RIELP Sbjct: 421 FRGERQPADVVRGSGIGLSIVHEYIAAHGGRLELLPDQPGAHLRIELP 468 >ref|ZP_04762141.1| histidine kinase [Acidovorax delafieldii 2AN] gb|EER61056.1| histidine kinase [Acidovorax delafieldii 2AN] Length = 485 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 227/468 (48%), Positives = 305/468 (65%), Gaps = 4/468 (0%) Query: 23 GLSFRQLLLAAFLLIAALLSGTSIHALFTLDRMSANSRETARQAVQLTEAAQRLAERTVA 82 GLSF+QLLL AF+LIA L +S+ AL+TL+++ SR+ + +A L AAQ L +R A Sbjct: 18 GLSFQQLLLLAFVLIACLQGISSLRALYTLEQLMVLSRQGSEEASALNAAAQGLYQRGQA 77 Query: 83 MERSARQYLVLDDPAFHDRFNEARDQARQALGEL-ADSLPKAPREMFGQWSVYVDEAAGV 141 +ER+ARQ LVL D F+E +A L L A L A +W ++ + Sbjct: 78 LERAARQSLVLRDATLRRSFDEMSIEAAAVLERLRAHGLADA---QAAEWQQHLKAVQAL 134 Query: 142 LDADSRKDKGEQARLFQDFARLPALNERIALESRREVDRRNNALSAALEQQRQMLTAQVV 201 LDA + + + ++F L +L+ I R +RN AL LE R+ +T QVV Sbjct: 135 LDAPPERALDNERLVAEEFGALDSLHTGIVQSMRNVNAQRNQALQDQLESSRRNVTHQVV 194 Query: 202 GAIVLAVLLAFCFGLWLSRPMARLEQAIGRLGDNRFDQPIDVRGPADIRRLGQQLDWLRQ 261 G I LA+ LA G+WL RP+ R+E I RLG+N+ DQP+ + GP D+RR+GQQLDWLR Sbjct: 195 GVIALALALALALGVWLGRPLKRIEGTIRRLGENQLDQPVAISGPEDVRRVGQQLDWLRL 254 Query: 262 RLADLEAEKSRFLRHVSHELKTPLAALCEGAALLDDGVAGQLTDSQREIARILRQNTQSL 321 RL +L+A+K+RFLRHVSHELKTPLAAL EG ALL D V G L QRE+A+IL NT L Sbjct: 255 RLLELDADKARFLRHVSHELKTPLAALREGVALLQDEVTGPLAPGQREVAQILHHNTLVL 314 Query: 322 QTQIEDLLRYNEVSFDAQRIHPVPVDLRALLHKVIDDQRLQWLARELKVEIEGAARTVVV 381 Q +IE LLR+N +F+A+R+ DL ALL ++ QRLQW A+ L+V +EG + ++ + Sbjct: 315 QAEIEALLRFNAAAFEARRLQREETDLLALLEAQVEAQRLQWQAKSLRVVVEGPSVSLPI 374 Query: 382 DPEKMAIVLANLLSNAVRFSPQGGFIRFLLSEAPGLVRVECVDQGPGVAPTDAARIFEPF 441 D EK+ ++NLLSNA+RFSP+ G +R LS PGLVRV+ DQGPGVA D +RIFEPF Sbjct: 375 DAEKITSAVSNLLSNAIRFSPREGTVRLTLSRQPGLVRVDISDQGPGVAVEDRSRIFEPF 434 Query: 442 YQGLNQPTAARRGNGIGLSVVREYVQAHSGKVYLVPREGGAHFRIELP 489 Y+G++QP + RG GIGLS+V EY+ AH G+V LV + FR+ELP Sbjct: 435 YRGVHQPDSGVRGTGIGLSIVHEYMVAHGGQVRLVEDDVDTLFRVELP 482 >ref|YP_002942884.1| histidine kinase [Variovorax paradoxus S110] gb|ACS17618.1| histidine kinase [Variovorax paradoxus S110] Length = 475 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 214/454 (47%), Positives = 298/454 (65%), Gaps = 4/454 (0%) Query: 37 IAALLSGTSIHALFTLDRMSANSRETARQAVQLTEAAQRLAERTVAMERSARQYLVLDDP 96 I ALL G ++ ++F D + SR+ A +A++L+ AAQ LAER+ AMER+ RQ LVL+D Sbjct: 22 ITALLVGVALRSVFQYDALMTQSRDAAARALRLSGAAQSLAERSAAMERAGRQSLVLNDA 81 Query: 97 AFHDRFNEARDQARQALGELA-DSLPKAPREMFGQWSVYVDEAAGVLDADSRKDKGEQAR 155 RF++A +A Q L L + L + E+ W + G++ + ++ Sbjct: 82 VLRRRFDDAAREAHQVLERLERNGLAPSGIEL---WRAQLGVIEGLMSGSADSALSRESG 138 Query: 156 LFQDFARLPALNERIALESRREVDRRNNALSAALEQQRQMLTAQVVGAIVLAVLLAFCFG 215 + F L +LN +A +++ ++ +N+AL+ +E R+ L +VV A +LAV LA FG Sbjct: 139 MAMQFRELDSLNTNLAQQAQFLIEMQNDALAKRIENARRRLMREVVAASILAVSLALAFG 198 Query: 216 LWLSRPMARLEQAIGRLGDNRFDQPIDVRGPADIRRLGQQLDWLRQRLADLEAEKSRFLR 275 +WL+RP RLE AI LG NR D+PID+RGPAD+RRL QQL+WLR RL +L+A+K+RFLR Sbjct: 199 IWLARPFKRLEHAIVGLGQNRLDEPIDIRGPADVRRLSQQLEWLRLRLTELDADKARFLR 258 Query: 276 HVSHELKTPLAALCEGAALLDDGVAGQLTDSQREIARILRQNTQSLQTQIEDLLRYNEVS 335 HVSHELKTPLAAL EG +LL+DGV G L +Q E+A+IL QNT SLQ QIE LLR+N + Sbjct: 259 HVSHELKTPLAALREGVSLLEDGVTGPLNPAQLEVAQILNQNTVSLQGQIEALLRFNAAA 318 Query: 336 FDAQRIHPVPVDLRALLHKVIDDQRLQWLARELKVEIEGAARTVVVDPEKMAIVLANLLS 395 F+A+ + DL L+ + I+ QRLQW A L+V EG + T+ VD K+ +ANLLS Sbjct: 319 FEARELRRERTDLLPLVEEQIEAQRLQWQAHGLRVHAEGESITLPVDRAKLGTAVANLLS 378 Query: 396 NAVRFSPQGGFIRFLLSEAPGLVRVECVDQGPGVAPTDAARIFEPFYQGLNQPTAARRGN 455 NA+R+S +GG I ++S P ++ D GPG+A D RIFEPFY+G QP A +G Sbjct: 379 NAIRYSARGGVISIVVSGTPTTACIDINDAGPGIAEGDRDRIFEPFYRGERQPEHAVKGT 438 Query: 456 GIGLSVVREYVQAHSGKVYLVPREGGAHFRIELP 489 GIGLS+V+EY+ AH G++ L+P GA FRIELP Sbjct: 439 GIGLSIVQEYIAAHGGRITLLPEGPGARFRIELP 472 >ref|YP_969246.1| integral membrane sensor signal transduction histidine kinase [Acidovorax citrulli AAC00-1] ref|YP_004233296.1| integral membrane sensor signal transduction histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] gb|ABM31472.1| integral membrane sensor signal transduction histidine kinase [Acidovorax citrulli AAC00-1] gb|ADX44729.1| integral membrane sensor signal transduction histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 486 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 225/467 (48%), Positives = 299/467 (64%), Gaps = 2/467 (0%) Query: 23 GLSFRQLLLAAFLLIAALLSGTSIHALFTLDRMSANSRETARQAVQLTEAAQRLAERTVA 82 GLSF+Q+LL AFLLIA L +S+ A+FTL+++ SR A +A+QL AAQ L R Sbjct: 19 GLSFQQMLLLAFLLIAGLQGASSLRAIFTLEQLMVQSRNGAAEAIQLNAAAQSLNARGQT 78 Query: 83 MERSARQYLVLDDPAFHDRFNEARDQARQALGELADSLPKAPREMFGQWSVYVDEAAGVL 142 +ER+ARQ LVL D + RF++ +A + L L P E+ QW ++ + +L Sbjct: 79 LERAARQSLVLADRSLRRRFDDISREAHEILQRLETK--GLPPELAAQWRAHLAQVTALL 136 Query: 143 DADSRKDKGEQARLFQDFARLPALNERIALESRREVDRRNNALSAALEQQRQMLTAQVVG 202 D + + F L +N IA + RR+ L +E R+ +T QVVG Sbjct: 137 DGPPALSLDNERAVAGLFLELDGVNGAIAQSVQDINTRRSAELQEKIEASRREVTHQVVG 196 Query: 203 AIVLAVLLAFCFGLWLSRPMARLEQAIGRLGDNRFDQPIDVRGPADIRRLGQQLDWLRQR 262 IVLA++LA G+WL+RP RLE AI LG+N Q +++ GP DIRR+GQQL+WLR R Sbjct: 197 VIVLALVLALALGIWLARPFKRLEHAIRLLGENELAQSVEIPGPVDIRRVGQQLEWLRVR 256 Query: 263 LADLEAEKSRFLRHVSHELKTPLAALCEGAALLDDGVAGQLTDSQREIARILRQNTQSLQ 322 L +L+A+K+RFLRH+SHELKTPLA++ EG ALL DGV G+L QRE+ IL QNT LQ Sbjct: 257 LLELDADKARFLRHISHELKTPLASMREGVALLQDGVTGELGAGQREVVDILHQNTLVLQ 316 Query: 323 TQIEDLLRYNEVSFDAQRIHPVPVDLRALLHKVIDDQRLQWLARELKVEIEGAARTVVVD 382 +IE LLR+N +F+A+++H P DL AL+ ++ QRLQW AR+L V +EG T+ VD Sbjct: 317 GEIEALLRFNAAAFEARQLHRAPTDLLALIEAQVETQRLQWQARKLDVVVEGRPVTLPVD 376 Query: 383 PEKMAIVLANLLSNAVRFSPQGGFIRFLLSEAPGLVRVECVDQGPGVAPTDAARIFEPFY 442 EK+A + NLLSNA+RFSPQGG I L +R++ D+GPGV D ARIFEPFY Sbjct: 377 AEKIASAVGNLLSNAIRFSPQGGRILIQLIRFEDRIRIDVTDEGPGVHENDRARIFEPFY 436 Query: 443 QGLNQPTAARRGNGIGLSVVREYVQAHSGKVYLVPREGGAHFRIELP 489 +G+ QP A RG GIGLS+V+EYV AH G+V LV FRIELP Sbjct: 437 RGVRQPEDAARGTGIGLSIVQEYVAAHGGRVSLVEAGERTPFRIELP 483 >ref|YP_285019.1| sensor histidine kinase [Dechloromonas aromatica RCB] gb|AAZ46549.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 482 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 213/469 (45%), Positives = 293/469 (62%), Gaps = 5/469 (1%) Query: 24 LSFRQLLLAAFLLIAALLSGTSIHALFTLDRMSANSRETARQAVQLTEAAQRLAERTVAM 83 +SFRQ +L F LI LL G ++ + ++R+ SR + QA+QLT A Q L ERTV + Sbjct: 19 ISFRQGMLLGFALIVLLLGGAAVQSWLVVERLVEQSRRGSEQAIQLTAAIQELGERTVDI 78 Query: 84 ERSARQYLVLDDPAFHDRFNEARDQARQALGELADSLPKAPREMFGQWSVYVDEAAGVLD 143 ERSARQYLVLD+P F RF+E Q+ + L + + G W + + L+ Sbjct: 79 ERSARQYLVLDNPVFRQRFDEHLAQSLAVIDRLDGMAAEPLLPLLGGWRMVAEALRSGLE 138 Query: 144 ADSRKDKGEQARLFQDFARLPALNERIALESRREVDRRNNALSAALEQQRQMLTAQVVGA 203 + QA + AR+ LN+ + +R ++ +N LE R L ++ A Sbjct: 139 QNI-----PQAEIIPLLARMAELNDLLRQGGQRWIEAQNRKSLEDLEANRLRLGGRIGLA 193 Query: 204 IVLAVLLAFCFGLWLSRPMARLEQAIGRLGDNRFDQPIDVRGPADIRRLGQQLDWLRQRL 263 ++ A+L+A G WL RP+ LEQAI RLG +RFD+ + V GPAD+R+LG++LDWLRQRL Sbjct: 194 LLGALLVALAIGWWLVRPVRHLEQAIIRLGASRFDEAVKVGGPADLRQLGKRLDWLRQRL 253 Query: 264 ADLEAEKSRFLRHVSHELKTPLAALCEGAALLDDGVAGQLTDSQREIARILRQNTQSLQT 323 ADLE+++ R LRHVSHELKTPL AL EG +LL + V G L QRE+ IL+ N + LQ Sbjct: 254 ADLESDRERALRHVSHELKTPLTALKEGISLLREEVPGPLASGQREVVEILQHNVRGLQE 313 Query: 324 QIEDLLRYNEVSFDAQRIHPVPVDLRALLHKVIDDQRLQWLARELKVEIEGAARTVVVDP 383 QIE LL N +F+A+R+ PV R LL V+ + L +R+L + +E ++D Sbjct: 314 QIESLLTLNAAAFEARRLQIAPVKPRKLLASVVQRRELHSQSRQLNIVVEAPDEQAMLDA 373 Query: 384 EKMAIVLANLLSNAVRFSPQGGFIRFLLSEAPGLVRVECVDQGPGVAPTDAARIFEPFYQ 443 EKM +VL NLLSNA+ FSP+GG +R S A GL R EC+DQGPG+A D RIF+PF Q Sbjct: 374 EKMTVVLDNLLSNAIDFSPEGGEVRLRASHADGLWRFECIDQGPGIADEDRQRIFDPFVQ 433 Query: 444 GLNQPTAARRGNGIGLSVVREYVQAHSGKVYLVPREGGAHFRIELPDEK 492 G + A R+G+G+GLS+VRE V+A G VYLVP+ GAHF +E+PDE+ Sbjct: 434 GQREAPAPRQGSGVGLSIVRELVRAMGGAVYLVPQSAGAHFCVEIPDEQ 482