BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0461.p (148 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778109.1| hypothetical protein Hsero_4740 [Herbaspiril... 296 8e-79 ref|YP_004620573.1| translation initiation factors [Ramlibacter ... 90 1e-16 ref|YP_983593.1| hypothetical protein Pnap_3375 [Polaromonas nap... 85 4e-15 ref|YP_547968.1| hypothetical protein Bpro_1118 [Polaromonas sp.... 84 6e-15 ref|YP_004153351.1| hypothetical protein Varpa_1022 [Variovorax ... 84 7e-15 ref|YP_002942883.1| hypothetical protein Vapar_0966 [Variovorax ... 83 2e-14 ref|YP_524030.1| hypothetical protein Rfer_2787 [Rhodoferax ferr... 82 4e-14 ref|YP_285020.1| hypothetical protein Daro_1803 [Dechloromonas a... 78 6e-13 ref|YP_004233295.1| hypothetical protein Acav_0805 [Acidovorax a... 72 3e-11 ref|YP_969245.1| hypothetical protein Aave_0873 [Acidovorax citr... 72 4e-11 >ref|YP_003778109.1| hypothetical protein Hsero_4740 [Herbaspirillum seropedicae SmR1] gb|ADJ66201.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 166 Score = 296 bits (758), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 147/148 (99%), Positives = 147/148 (99%) Query: 1 VQPDAPTSTVKLIHASSNIDELLAYHAQLRKMTPAELGRELQRINTYPAGPANLVRRAMA 60 VQPDAPTSTVKLIHASSNIDELLAYHAQLRKMTPAELGRELQRINTYPAGPANLVRRAMA Sbjct: 19 VQPDAPTSTVKLIHASSNIDELLAYHAQLRKMTPAELGRELQRINTYPAGPANLVRRAMA 78 Query: 61 LALTRDGIDLAKAEAQLWNVMADNSVEVEKLKPLVQLLVGQYADLRRLADSAEKSSVQAK 120 LALTRDGIDLAKAEAQLWNVMADNSVE EKLKPLVQLLVGQYADLRRLADSAEKSSVQAK Sbjct: 79 LALTRDGIDLAKAEAQLWNVMADNSVEAEKLKPLVQLLVGQYADLRRLADSAEKSSVQAK 138 Query: 121 EAQRKVDQLNDKLEALKNIERTLPAGGK 148 EAQRKVDQLNDKLEALKNIERTLPAGGK Sbjct: 139 EAQRKVDQLNDKLEALKNIERTLPAGGK 166 >ref|YP_004620573.1| translation initiation factors [Ramlibacter tataouinensis TTB310] gb|AEG94554.1| translation initiation factors-like protein [Ramlibacter tataouinensis TTB310] Length = 183 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 83/142 (58%) Query: 4 DAPTSTVKLIHASSNIDELLAYHAQLRKMTPAELGRELQRINTYPAGPANLVRRAMALAL 63 DAP ++ +LA+ +LR + P EL +E+ R+N P ++ A+AL Sbjct: 38 DAPQLQPPAETGQPPLNTVLAHADRLRTLPPPELAQEIARLNDTGGSPVRQMQLALALLQ 97 Query: 64 TRDGIDLAKAEAQLWNVMADNSVEVEKLKPLVQLLVGQYADLRRLADSAEKSSVQAKEAQ 123 T+ D +A L V+A ++ E +L PL +L+ QY RR + AE+S+ Q ++ Q Sbjct: 98 TQAPADGQRANGLLQRVLAQDTPEARQLHPLARLIATQYTAQRRAEEQAERSAQQLRDGQ 157 Query: 124 RKVDQLNDKLEALKNIERTLPA 145 R++DQLN++LEAL+ IER++P+ Sbjct: 158 RRIDQLNERLEALRAIERSMPS 179 >ref|YP_983593.1| hypothetical protein Pnap_3375 [Polaromonas naphthalenivorans CJ2] gb|ABM38672.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2] Length = 237 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 54/142 (38%), Positives = 88/142 (61%), Gaps = 3/142 (2%) Query: 3 PDAPTSTVKLIHASSNIDELLAYHAQLRKMTPAELGRELQRI-NTYPAGPANLVRRAMAL 61 P AP++ ++ + +LAY ++R ++ AEL +E+ R+ N Y PAN ++ A+AL Sbjct: 72 PSAPSAGTAPASDNAAVTRVLAYADRIRSLSSAELNQEVARLGNAY--IPANQLQLALAL 129 Query: 62 ALTRDGIDLAKAEAQLWNVMADNSVEVEKLKPLVQLLVGQYADLRRLADSAEKSSVQAKE 121 A R +L +A+ L ++A+ E + L PL +LL +Y + RRL D +K + Q +E Sbjct: 130 AQLRQTPELIRAQELLTRLLANTDAEAQALHPLARLLAARYGEQRRLEDQLDKQNQQTRE 189 Query: 122 AQRKVDQLNDKLEALKNIERTL 143 QR++DQ N++LEALK IER+L Sbjct: 190 VQRRLDQTNERLEALKAIERSL 211 >ref|YP_547968.1| hypothetical protein Bpro_1118 [Polaromonas sp. JS666] gb|ABE43070.1| hypothetical protein Bpro_1118 [Polaromonas sp. JS666] Length = 223 Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 52/141 (36%), Positives = 83/141 (58%), Gaps = 4/141 (2%) Query: 6 PTSTVKLIHASSNID---ELLAYHAQLRKMTPAELGRELQRINTYPAGPANLVRRAMALA 62 PT TV + D +LAY ++R M PAELG+E+ R+ + P++ +R ++ L+ Sbjct: 60 PTVTVAKPTPPAETDAIVRVLAYAERVRVMPPAELGQEVARLGDA-STPSDQLRLSLVLS 118 Query: 63 LTRDGIDLAKAEAQLWNVMADNSVEVEKLKPLVQLLVGQYADLRRLADSAEKSSVQAKEA 122 DL +A+ L V+ + E + L PL +LL ++ + RRL + EK + Q ++ Sbjct: 119 QLHQLPDLIRAQELLARVLGNADAEAQALHPLARLLASRFGEQRRLEEQLEKQNQQVRDV 178 Query: 123 QRKVDQLNDKLEALKNIERTL 143 QRK+DQ N++LEALK IER+L Sbjct: 179 QRKLDQTNERLEALKAIERSL 199 >ref|YP_004153351.1| hypothetical protein Varpa_1022 [Variovorax paradoxus EPS] gb|ADU35240.1| hypothetical protein Varpa_1022 [Variovorax paradoxus EPS] Length = 222 Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 47/122 (38%), Positives = 75/122 (61%) Query: 22 LLAYHAQLRKMTPAELGRELQRINTYPAGPANLVRRAMALALTRDGIDLAKAEAQLWNVM 81 +L+Y ++R + ELG E+ RI P ++ A+ L+ TR DLA+A L V+ Sbjct: 77 MLSYADKVRTLGGNELGAEIARIGDPGDSPTTQMQLAILLSQTRVPADLARALGLLQRVI 136 Query: 82 ADNSVEVEKLKPLVQLLVGQYADLRRLADSAEKSSVQAKEAQRKVDQLNDKLEALKNIER 141 A+ S E + L+PL + L +Y + RR+ D +K Q +E+QR++DQLND++EAL+ IER Sbjct: 137 ANPSPEAQPLQPLARALAARYVEQRRVEDDRDKQVQQLRESQRRIDQLNDRIEALRAIER 196 Query: 142 TL 143 + Sbjct: 197 SF 198 >ref|YP_002942883.1| hypothetical protein Vapar_0966 [Variovorax paradoxus S110] gb|ACS17617.1| conserved hypothetical protein [Variovorax paradoxus S110] Length = 219 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/122 (37%), Positives = 75/122 (61%) Query: 22 LLAYHAQLRKMTPAELGRELQRINTYPAGPANLVRRAMALALTRDGIDLAKAEAQLWNVM 81 +LAY ++R + AEL E+ R P ++ A+ LA TR DLA+A + V+ Sbjct: 77 MLAYADKVRPLGGAELAAEITRAGDPGDSPTAQMQLALLLAQTRVPADLARALGLMQRVI 136 Query: 82 ADNSVEVEKLKPLVQLLVGQYADLRRLADSAEKSSVQAKEAQRKVDQLNDKLEALKNIER 141 ++ S E + L+PL + L +Y + RR+ D +K + Q +E+QR++DQLND++EAL+ IER Sbjct: 137 SNPSPEAQPLQPLARALAARYVEQRRVEDDRDKQAQQVRESQRRIDQLNDRIEALRAIER 196 Query: 142 TL 143 + Sbjct: 197 SF 198 >ref|YP_524030.1| hypothetical protein Rfer_2787 [Rhodoferax ferrireducens T118] gb|ABD70499.1| hypothetical protein Rfer_2787 [Rhodoferax ferrireducens T118] Length = 220 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 48/130 (36%), Positives = 79/130 (60%), Gaps = 1/130 (0%) Query: 14 HASSNIDELLAYHAQLRKMTPAELGRELQRINTYPAGPANLVRRAMALALTRDGIDLAKA 73 A+ + +LAY +LR++ PAEL +E+ R+ AGP ++ ++ L+ +L +A Sbjct: 70 QATDAVTRMLAYADRLRRLAPAELSQEVIRLGDA-AGPTQQLQLSLVLSQLHQLSELIRA 128 Query: 74 EAQLWNVMADNSVEVEKLKPLVQLLVGQYADLRRLADSAEKSSVQAKEAQRKVDQLNDKL 133 + L V+A+ E + L PL LL +Y + RRL + EK + Q ++ QR++DQ N++L Sbjct: 129 QELLARVLANADTEAQTLHPLAGLLASRYGEQRRLEEQLEKQTQQTRDVQRRLDQTNERL 188 Query: 134 EALKNIERTL 143 EALK IER+L Sbjct: 189 EALKAIERSL 198 >ref|YP_285020.1| hypothetical protein Daro_1803 [Dechloromonas aromatica RCB] gb|AAZ46550.1| hypothetical protein Daro_1803 [Dechloromonas aromatica RCB] Length = 180 Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 49/121 (40%), Positives = 67/121 (55%) Query: 23 LAYHAQLRKMTPAELGRELQRINTYPAGPANLVRRAMALALTRDGIDLAKAEAQLWNVMA 82 L+Y+ L K+T AELGRE ++ P P VR AM L R DL KA A L NV+ Sbjct: 46 LSYNQGLSKITAAELGRERMVLSAVPQTPYTQVRMAMLLGHPRVQQDLGKALALLDNVLK 105 Query: 83 DNSVEVEKLKPLVQLLVGQYADLRRLADSAEKSSVQAKEAQRKVDQLNDKLEALKNIERT 142 N PL +LL Y + +L + +K Q K++QRK +L +KL++L +IERT Sbjct: 106 SNDPAAVPFHPLARLLSDNYIERAKLENQLDKQGQQLKDSQRKASELQEKLDSLADIERT 165 Query: 143 L 143 L Sbjct: 166 L 166 >ref|YP_004233295.1| hypothetical protein Acav_0805 [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX44728.1| hypothetical protein Acav_0805 [Acidovorax avenae subsp. avenae ATCC 19860] Length = 255 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 73/127 (57%), Gaps = 4/127 (3%) Query: 21 ELLAYHAQLRKMTPAELGRELQRINTYPAGPANLVRRAMALAL----TRDGIDLAKAEAQ 76 ++L Y ++R + P EL E+ R++ A + ++ LAL TR D A++ Sbjct: 107 QMLLYADRIRSLPPPELMAEIARLSDAQANAGSPPEKSFQLALVLLQTRQPADTARSLGL 166 Query: 77 LWNVMADNSVEVEKLKPLVQLLVGQYADLRRLADSAEKSSVQAKEAQRKVDQLNDKLEAL 136 + +++DN L+PL +LL + RRL D ++ S Q K+ QR++DQLN++LEA+ Sbjct: 167 VQKLLSDNRPAATSLQPLARLLENRLLQQRRLEDQLDRQSQQLKDGQRRIDQLNERLEAM 226 Query: 137 KNIERTL 143 + IER+L Sbjct: 227 RAIERSL 233 >ref|YP_969245.1| hypothetical protein Aave_0873 [Acidovorax citrulli AAC00-1] gb|ABM31471.1| conserved hypothetical protein [Acidovorax citrulli AAC00-1] Length = 255 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 73/127 (57%), Gaps = 4/127 (3%) Query: 21 ELLAYHAQLRKMTPAELGRELQRINTYPAGPANLVRRAMALAL----TRDGIDLAKAEAQ 76 ++L Y ++R + P EL E+ R++ A + ++ LAL TR D A++ Sbjct: 107 QMLLYADRIRSLPPPELMAEIARLSDAQANAGSPPEKSFQLALVLLQTRQPADTARSLGL 166 Query: 77 LWNVMADNSVEVEKLKPLVQLLVGQYADLRRLADSAEKSSVQAKEAQRKVDQLNDKLEAL 136 + +++DN L+PL +LL + RRL D ++ S Q K+ QR++DQLN++LEA+ Sbjct: 167 VQKLLSDNRPAATSLQPLARLLENRLLQQRRLEDQLDRQSQQLKDGQRRIDQLNERLEAM 226 Query: 137 KNIERTL 143 + IER+L Sbjct: 227 RAIERSL 233