BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0460.p (460 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778108.1| two component transcription regulator protei... 915 0.0 ref|YP_002942882.1| two component sigma-54 specific Fis family t... 652 0.0 ref|YP_969244.1| Fis family two component sigma-54 specific tran... 648 0.0 ref|YP_004233294.1| putative two component, sigma54 specific, tr... 648 0.0 ref|YP_004153350.1| two component sigma-54 specific Fis family t... 647 0.0 ref|YP_524029.1| Fis family two component sigma-54 specific tran... 643 0.0 ref|YP_983594.1| Fis family two component sigma-54 specific tran... 642 0.0 ref|YP_547967.1| Fis family two component sigma-54 specific tran... 641 0.0 ref|ZP_08406638.1| two component, sigma54 specific, Fis family t... 635 e-180 ref|YP_004620574.1| response regulator NtrC [Ramlibacter tataoui... 621 e-176 >ref|YP_003778108.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ66200.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 466 Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust. Identities = 459/460 (99%), Positives = 459/460 (99%) Query: 1 MGKTAPLMLVDDDPDLLRLLTLRLNASGYRILAVESAEAALAQLAISLPALVITDVRLPG 60 MGKTAPLMLVDDDPDLLRLLTLRLNASGYRILAVESAEAALAQLAISLPALVITDVRLPG Sbjct: 7 MGKTAPLMLVDDDPDLLRLLTLRLNASGYRILAVESAEAALAQLAISLPALVITDVRLPG 66 Query: 61 MDGLALFAEIRSRYPALPVILLTAHGTIPDAVDATTQGAFAYLTKPFDGHVLLDKVAQAL 120 MDGLALFAEIRSRYPALPVILLTAHGTIPDAVDATTQGAFAYLTKPFDGHVLLDKVAQAL Sbjct: 67 MDGLALFAEIRSRYPALPVILLTAHGTIPDAVDATTQGAFAYLTKPFDGHVLLDKVAQAL 126 Query: 121 SLAAPAPLSPDQSWRADILSRSQRVAELLAEARLVAASDASILIRGDSGTGKELLGRAIH 180 SLAAPAPLSPDQSWRADILSRSQRVAELLAEARLVAASDASILIRGDSGTGKELL RAIH Sbjct: 127 SLAAPAPLSPDQSWRADILSRSQRVAELLAEARLVAASDASILIRGDSGTGKELLARAIH 186 Query: 181 RASARAEQPFIAVNCGAIPEQLLESELFGHVKGAFTGAVEHREGLFQAAHGGTLFLDEIG 240 RASARAEQPFIAVNCGAIPEQLLESELFGHVKGAFTGAVEHREGLFQAAHGGTLFLDEIG Sbjct: 187 RASARAEQPFIAVNCGAIPEQLLESELFGHVKGAFTGAVEHREGLFQAAHGGTLFLDEIG 246 Query: 241 DMPLPLQVKLLRVLQEKTVRQVGANQAGEVDVRIISATHRDLEAAMREGQFREDLYYRLN 300 DMPLPLQVKLLRVLQEKTVRQVGANQAGEVDVRIISATHRDLEAAMREGQFREDLYYRLN Sbjct: 247 DMPLPLQVKLLRVLQEKTVRQVGANQAGEVDVRIISATHRDLEAAMREGQFREDLYYRLN 306 Query: 301 VVTLHLPALEERREDIALLANHFLKTIAAKYPKRLTGFAPDALEILSLAHWPGNVRQLYN 360 VVTLHLPALEERREDIALLANHFLKTIAAKYPKRLTGFAPDALEILSLAHWPGNVRQLYN Sbjct: 307 VVTLHLPALEERREDIALLANHFLKTIAAKYPKRLTGFAPDALEILSLAHWPGNVRQLYN 366 Query: 361 VVEQVCALSTAPLIPASLVQRALRTPTLDLLRYAEAKQKFERDYLIRLLKLTDGNVSDAA 420 VVEQVCALSTAPLIPASLVQRALRTPTLDLLRYAEAKQKFERDYLIRLLKLTDGNVSDAA Sbjct: 367 VVEQVCALSTAPLIPASLVQRALRTPTLDLLRYAEAKQKFERDYLIRLLKLTDGNVSDAA 426 Query: 421 RLADRNRTEFYRLLQKNGLDPRRFRGGEEAVVAGRQEERL 460 RLADRNRTEFYRLLQKNGLDPRRFRGGEEAVVAGRQEERL Sbjct: 427 RLADRNRTEFYRLLQKNGLDPRRFRGGEEAVVAGRQEERL 466 >ref|YP_002942882.1| two component sigma-54 specific Fis family transcriptional regulator [Variovorax paradoxus S110] gb|ACS17616.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Variovorax paradoxus S110] Length = 462 Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/455 (71%), Positives = 384/455 (84%), Gaps = 5/455 (1%) Query: 5 APLMLVDDDPDLLRLLTLRLNASGYRILAVESAEAALAQLAISLPALVITDVRLPGMDGL 64 A L++VDDDPD+LRLL++RL+++GY++ AV SAE AL QL I P LV++DVRLPG DGL Sbjct: 6 ARLLVVDDDPDMLRLLSMRLSSAGYQVTAVTSAETALTQLEIEHPQLVLSDVRLPGRDGL 65 Query: 65 ALFAEIRSRYPALPVILLTAHGTIPDAVDATTQGAFAYLTKPFDGHVLLDKVAQALSLAA 124 LF EIR R+P+LPVILLTAHGTIPDAV+AT +G F YLTKP+DG LLDK+AQAL+L A Sbjct: 66 QLFDEIRKRHPSLPVILLTAHGTIPDAVEATARGVFTYLTKPYDGRELLDKIAQALALGA 125 Query: 125 PAPL---SPDQSWRADILSRSQRVAELLAEARLVAASDASILIRGDSGTGKELLGRAIHR 181 PA + D+SWRA+I+SRS R++ELLAEAR+VA SDAS+L+RGDSG GKELL RAIHR Sbjct: 126 PASTPAKAGDESWRAEIVSRSNRMSELLAEARMVAKSDASVLLRGDSGAGKELLARAIHR 185 Query: 182 ASARAEQPFIAVNCGAIPEQLLESELFGHVKGAFTGAVEHREGLFQAAHGGTLFLDEIGD 241 ASARA++PF+AVNCGAIPE LLESELFGH+KGAFT A + +GLFQ A GGTL LDEIGD Sbjct: 186 ASARADKPFVAVNCGAIPEALLESELFGHMKGAFTDAHANHKGLFQQADGGTLLLDEIGD 245 Query: 242 MPLPLQVKLLRVLQEKTVRQVGANQAGEVDVRIISATHRDLEAAMREGQFREDLYYRLNV 301 MP LQVKLLRVLQE+ VR +GA+Q+ EVDVRIISATHRDL+ AM GQFREDLYYRLNV Sbjct: 246 MPPALQVKLLRVLQERAVRPLGASQSIEVDVRIISATHRDLDVAMEAGQFREDLYYRLNV 305 Query: 302 VTLHLPALEERREDIALLANHFLKTIAAKYPKRLTGFAPDALEILSLAHWPGNVRQLYNV 361 VTL LP L RREDI LLANHFL+ ++ KY KRL+GFAP+AL+ L+ A WPGNVRQLYNV Sbjct: 306 VTLTLPPLSARREDIPLLANHFLQKLSTKYGKRLSGFAPEALKALATAAWPGNVRQLYNV 365 Query: 362 VEQVCALSTAPLIPASLVQRALRTPTLDLLRYAEAKQKFERDYLIRLLKLTDGNVSDAAR 421 VEQVCALS++PLIP +LVQRALR PT+++ YAEAKQ+FERDYL+ LLKLTDGNV+DAAR Sbjct: 366 VEQVCALSSSPLIPLALVQRALRVPTVEVQTYAEAKQRFERDYLVGLLKLTDGNVADAAR 425 Query: 422 LADRNRTEFYRLLQKNGLDPRRFRGGEEAVVAGRQ 456 LADRNRTEFYRLLQK+ L P F+ +AV G + Sbjct: 426 LADRNRTEFYRLLQKHELTPGHFKA--DAVAPGNE 458 >ref|YP_969244.1| Fis family two component sigma-54 specific transcriptional regulator [Acidovorax citrulli AAC00-1] gb|ABM31470.1| two component, sigma54 specific, transcriptional regulator, Fis family [Acidovorax citrulli AAC00-1] Length = 471 Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/442 (72%), Positives = 376/442 (85%), Gaps = 2/442 (0%) Query: 7 LMLVDDDPDLLRLLTLRLNASGYRILAVESAEAALAQLAISLPALVITDVRLPGMDGLAL 66 +++VDDD D+LRLL+LRLNA+GY I AV SAEAALAQL S P LV++DVRLPG DGLAL Sbjct: 16 ILVVDDDADMLRLLSLRLNAAGYEITAVPSAEAALAQLETSRPQLVLSDVRLPGRDGLAL 75 Query: 67 FAEIRSRYPALPVILLTAHGTIPDAVDATTQGAFAYLTKPFDGHVLLDKVAQALSLAAPA 126 F E+RSR+P+LPVILLTAHGTIPDAV+AT +G F YLTKP+D LLDK+AQAL+L+APA Sbjct: 76 FDEVRSRHPSLPVILLTAHGTIPDAVEATARGVFTYLTKPYDAKDLLDKIAQALALSAPA 135 Query: 127 PLSP--DQSWRADILSRSQRVAELLAEARLVAASDASILIRGDSGTGKELLGRAIHRASA 184 +P D +WRA+I+SRS R+A+LLAEAR+VA SDAS+L+ GDSGTGKELL RAIHRAS Sbjct: 136 TQTPQADSTWRAEIVSRSNRMADLLAEARMVAQSDASVLLLGDSGTGKELLARAIHRASP 195 Query: 185 RAEQPFIAVNCGAIPEQLLESELFGHVKGAFTGAVEHREGLFQAAHGGTLFLDEIGDMPL 244 RA +PF+AVNCGAIPE LLESELFGH+KGAFT A + +GLFQAA GGTL LDEIGDMP Sbjct: 196 RAARPFVAVNCGAIPEALLESELFGHMKGAFTDAHSNHKGLFQAADGGTLLLDEIGDMPP 255 Query: 245 PLQVKLLRVLQEKTVRQVGANQAGEVDVRIISATHRDLEAAMREGQFREDLYYRLNVVTL 304 LQVKLLRVLQE+ VR VGA+QA V+VRI+SATHRDLEAAM GQFREDLYYRLNVVTL Sbjct: 256 ALQVKLLRVLQERAVRPVGASQATPVNVRIVSATHRDLEAAMATGQFREDLYYRLNVVTL 315 Query: 305 HLPALEERREDIALLANHFLKTIAAKYPKRLTGFAPDALEILSLAHWPGNVRQLYNVVEQ 364 LP L +RREDI LLANHFL +A KY KRL+GF+P+AL+ L+ A WPGNVRQLYNVVEQ Sbjct: 316 TLPTLADRREDIPLLANHFLDQLARKYDKRLSGFSPEALKALTAAPWPGNVRQLYNVVEQ 375 Query: 365 VCALSTAPLIPASLVQRALRTPTLDLLRYAEAKQKFERDYLIRLLKLTDGNVSDAARLAD 424 CALST PL+P LVQRALRTPT+ +L + EA+Q+FER+YL+ LLK+TDGNV+DAARLA Sbjct: 376 ACALSTTPLVPLGLVQRALRTPTVQVLSFTEARQRFEREYLVDLLKMTDGNVADAARLAQ 435 Query: 425 RNRTEFYRLLQKNGLDPRRFRG 446 RNRTEFYRLLQK+ L P +F+ Sbjct: 436 RNRTEFYRLLQKHALTPGQFKS 457 >ref|YP_004233294.1| putative two component, sigma54 specific, transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX44727.1| putative two component, sigma54 specific, transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] Length = 471 Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/456 (71%), Positives = 380/456 (83%), Gaps = 5/456 (1%) Query: 7 LMLVDDDPDLLRLLTLRLNASGYRILAVESAEAALAQLAISLPALVITDVRLPGMDGLAL 66 +++VDDD D+LRLL+LRLNA+GY I AV SAEAALAQL S P LV++DVRLPG DGLAL Sbjct: 16 ILVVDDDADMLRLLSLRLNAAGYEITAVPSAEAALAQLETSRPQLVLSDVRLPGRDGLAL 75 Query: 67 FAEIRSRYPALPVILLTAHGTIPDAVDATTQGAFAYLTKPFDGHVLLDKVAQALSLAAPA 126 F E+RSR+P+LPVILLTAHGTIPDAV+AT +G F YLTKP+D LLDK+AQAL+L+APA Sbjct: 76 FDEVRSRHPSLPVILLTAHGTIPDAVEATARGVFTYLTKPYDAKDLLDKIAQALALSAPA 135 Query: 127 PLSP--DQSWRADILSRSQRVAELLAEARLVAASDASILIRGDSGTGKELLGRAIHRASA 184 +P D +WRA+I+SRS R+A+LLAEAR+VA SDAS+L+ GDSGTGKELL RAIHRAS Sbjct: 136 TRTPQADSTWRAEIVSRSNRMADLLAEARMVAQSDASVLLLGDSGTGKELLARAIHRASP 195 Query: 185 RAEQPFIAVNCGAIPEQLLESELFGHVKGAFTGAVEHREGLFQAAHGGTLFLDEIGDMPL 244 RA +PF+AVNCGAIPE LLESELFGH+KGAFT A + +GLFQAA GGTL LDEIGDMP Sbjct: 196 RAARPFVAVNCGAIPEALLESELFGHMKGAFTDAHSNHKGLFQAADGGTLLLDEIGDMPP 255 Query: 245 PLQVKLLRVLQEKTVRQVGANQAGEVDVRIISATHRDLEAAMREGQFREDLYYRLNVVTL 304 LQVKLLRVLQE+ VR VGA+QA V+VRI+SATHRDLEAAM GQFREDLYYRLNVVTL Sbjct: 256 ALQVKLLRVLQERAVRPVGASQATPVNVRIVSATHRDLEAAMATGQFREDLYYRLNVVTL 315 Query: 305 HLPALEERREDIALLANHFLKTIAAKYPKRLTGFAPDALEILSLAHWPGNVRQLYNVVEQ 364 LP L +RREDI LLANHFL +A KY KRL+GF+P+AL+ L+ A WPGNVRQLYNVVEQ Sbjct: 316 TLPTLADRREDIPLLANHFLDQLARKYDKRLSGFSPEALKALTAAPWPGNVRQLYNVVEQ 375 Query: 365 VCALSTAPLIPASLVQRALRTPTLDLLRYAEAKQKFERDYLIRLLKLTDGNVSDAARLAD 424 CALST PL+P LVQRALRTPT +L + EA+Q+FER+YL+ LLK+TDGNV+DAARLA Sbjct: 376 ACALSTTPLVPLGLVQRALRTPTAQVLSFTEARQRFEREYLVDLLKMTDGNVADAARLAQ 435 Query: 425 RNRTEFYRLLQKNGLDPRRFR---GGEEAVVAGRQE 457 RNRTEFYRLLQK+ L P +F+ + V RQE Sbjct: 436 RNRTEFYRLLQKHALTPGQFKSDGASPDDVAEERQE 471 >ref|YP_004153350.1| two component sigma-54 specific Fis family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU35239.1| putative two component, sigma54 specific, transcriptional regulator, Fis family [Variovorax paradoxus EPS] Length = 462 Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/453 (71%), Positives = 382/453 (84%), Gaps = 5/453 (1%) Query: 5 APLMLVDDDPDLLRLLTLRLNASGYRILAVESAEAALAQLAISLPALVITDVRLPGMDGL 64 A L++VDDDPD+LRL+++RL ++GY++ AV SAE AL QL I P LV++DVRLPG DGL Sbjct: 6 ARLLVVDDDPDMLRLISMRLVSAGYQVTAVTSAETALTQLEIEHPQLVLSDVRLPGRDGL 65 Query: 65 ALFAEIRSRYPALPVILLTAHGTIPDAVDATTQGAFAYLTKPFDGHVLLDKVAQALSLAA 124 ALF EIR R+P+LPVILLTAHGTIPDAV+AT +G F YLTKP+D LLDK+ QAL+L A Sbjct: 66 ALFDEIRKRHPSLPVILLTAHGTIPDAVEATARGVFTYLTKPYDARELLDKIGQALALGA 125 Query: 125 PAPL---SPDQSWRADILSRSQRVAELLAEARLVAASDASILIRGDSGTGKELLGRAIHR 181 PA S D+SWRA+I+SRS R+AELLAEAR+VA SDAS+L+RGDSG GKELL RAIH+ Sbjct: 126 PASTPAKSGDESWRAEIVSRSNRMAELLAEARMVAKSDASVLLRGDSGAGKELLARAIHK 185 Query: 182 ASARAEQPFIAVNCGAIPEQLLESELFGHVKGAFTGAVEHREGLFQAAHGGTLFLDEIGD 241 ASARA++PF+AVNCGAIPE LLESELFGH+KGAFT A + +GLFQ A GGTL LDEIGD Sbjct: 186 ASARADKPFVAVNCGAIPEALLESELFGHMKGAFTDAHANHKGLFQQADGGTLLLDEIGD 245 Query: 242 MPLPLQVKLLRVLQEKTVRQVGANQAGEVDVRIISATHRDLEAAMREGQFREDLYYRLNV 301 MP LQVKLLRVLQE+ VR +GA+Q+ EVDVRI+SATHRDL+AAM GQFREDLYYRLNV Sbjct: 246 MPPALQVKLLRVLQERAVRPLGASQSIEVDVRIVSATHRDLDAAMEAGQFREDLYYRLNV 305 Query: 302 VTLHLPALEERREDIALLANHFLKTIAAKYPKRLTGFAPDALEILSLAHWPGNVRQLYNV 361 VTL LP L RREDI LLANHFL+ ++ KY KRL+GFAP+AL+ L+ A WPGNVRQL+NV Sbjct: 306 VTLTLPPLSARREDIPLLANHFLQRLSTKYGKRLSGFAPEALKALTTAAWPGNVRQLFNV 365 Query: 362 VEQVCALSTAPLIPASLVQRALRTPTLDLLRYAEAKQKFERDYLIRLLKLTDGNVSDAAR 421 VEQVCALS++PLIP +LVQRALR PT+++ YAEAKQ+FERDYL+ LLKLTDGNV+DAAR Sbjct: 366 VEQVCALSSSPLIPLALVQRALRVPTVEVQTYAEAKQRFERDYLVGLLKLTDGNVADAAR 425 Query: 422 LADRNRTEFYRLLQKNGLDPRRFRGGEEAVVAG 454 LADRNRTEFYRLLQK+ L P F+ +AV G Sbjct: 426 LADRNRTEFYRLLQKHELTPGHFKA--DAVAPG 456 >ref|YP_524029.1| Fis family two component sigma-54 specific transcriptional regulator [Rhodoferax ferrireducens T118] gb|ABD70498.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodoferax ferrireducens T118] Length = 477 Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/443 (72%), Positives = 380/443 (85%), Gaps = 5/443 (1%) Query: 7 LMLVDDDPDLLRLLTLRLNASGYRILAVESAEAALAQLAISLPALVITDVRLPGMDGLAL 66 L++VDDD D+LRLLT+RL A+GYR+ AV SAEAA+ QL I P LV++DVRLPG DGLAL Sbjct: 23 LLVVDDDADMLRLLTIRLTAAGYRVTAVTSAEAAMTQLHIERPQLVLSDVRLPGRDGLAL 82 Query: 67 FAEIRSRYPALPVILLTAHGTIPDAVDATTQGAFAYLTKPFDGHVLLDKVAQALSLAAPA 126 F +IR+++P+LPVILLTAHGTIPDAV AT +G F+YLTKPFDG LLDK+AQALSL+APA Sbjct: 83 FDDIRAQHPSLPVILLTAHGTIPDAVQATERGVFSYLTKPFDGKSLLDKIAQALSLSAPA 142 Query: 127 ----PLSPDQSWRADILSRSQRVAELLAEARLVAASDASILIRGDSGTGKELLGRAIHRA 182 P SP Q+W+ I+SRS R+AE+LAEA +VA SDAS+L+RG+SGTGKELL RAIH+A Sbjct: 143 HSVKPGSP-QAWQNQIVSRSSRMAEVLAEAHMVAQSDASVLLRGESGTGKELLARAIHQA 201 Query: 183 SARAEQPFIAVNCGAIPEQLLESELFGHVKGAFTGAVEHREGLFQAAHGGTLFLDEIGDM 242 +RA +PFIAVNCGAIPE LLESELFGHVKGAFTGAV + GLFQAA GGTL LDEIGDM Sbjct: 202 GSRAGKPFIAVNCGAIPEPLLESELFGHVKGAFTGAVANHIGLFQAADGGTLLLDEIGDM 261 Query: 243 PLPLQVKLLRVLQEKTVRQVGANQAGEVDVRIISATHRDLEAAMREGQFREDLYYRLNVV 302 P LQVKLLRVLQE+ VR +G++Q+ VDVRIISATHRDL+ AM EGQFR DLYYRLNVV Sbjct: 262 PPALQVKLLRVLQERMVRPLGSSQSIPVDVRIISATHRDLDLAMAEGQFRADLYYRLNVV 321 Query: 303 TLHLPALEERREDIALLANHFLKTIAAKYPKRLTGFAPDALEILSLAHWPGNVRQLYNVV 362 TL LP L ERREDIALLAN+FL +A KY KRL+GFAP+AL L+ A WPGNVRQLYNVV Sbjct: 322 TLSLPPLSERREDIALLANYFLVKLADKYKKRLSGFAPEALIALTTAAWPGNVRQLYNVV 381 Query: 363 EQVCALSTAPLIPASLVQRALRTPTLDLLRYAEAKQKFERDYLIRLLKLTDGNVSDAARL 422 EQVCALST+PL+P +LVQRALR+P++++L AEA+Q+FERDYL+ LLKLTDGNV+DAARL Sbjct: 382 EQVCALSTSPLVPLALVQRALRSPSVEVLTLAEARQRFERDYLVGLLKLTDGNVADAARL 441 Query: 423 ADRNRTEFYRLLQKNGLDPRRFR 445 ADRNRTEFYRL+QK+GL P F+ Sbjct: 442 ADRNRTEFYRLMQKHGLTPGLFK 464 >ref|YP_983594.1| Fis family two component sigma-54 specific transcriptional regulator [Polaromonas naphthalenivorans CJ2] gb|ABM38673.1| two component, sigma54 specific, transcriptional regulator, Fis family [Polaromonas naphthalenivorans CJ2] Length = 462 Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/443 (72%), Positives = 375/443 (84%), Gaps = 3/443 (0%) Query: 7 LMLVDDDPDLLRLLTLRLNASGYRILAVESAEAALAQLAISLPALVITDVRLPGMDGLAL 66 L++VDDD D+LRLLT+RL A+GYR+ AV SAEAAL +L + P LV++DVRLPG DGLAL Sbjct: 12 LLVVDDDADMLRLLTMRLTAAGYRVTAVTSAEAALTELQLHRPQLVLSDVRLPGKDGLAL 71 Query: 67 FAEIRSRYPALPVILLTAHGTIPDAVDATTQGAFAYLTKPFDGHVLLDKVAQALSLAAP- 125 F +IR+R+P+LPVILLTAHGTIPDAV+AT +G F YLTKPFDG L K+A+AL L+AP Sbjct: 72 FDDIRARHPSLPVILLTAHGTIPDAVEATERGVFTYLTKPFDGKALEGKIAEALLLSAPV 131 Query: 126 --APLSPDQSWRADILSRSQRVAELLAEARLVAASDASILIRGDSGTGKELLGRAIHRAS 183 A ++W+ I+SRS R+AE+LAEAR+VA SDAS+L+RG+SGTGKELL +AIH+AS Sbjct: 132 NPARQGSPEAWQTRIISRSSRMAEVLAEARMVATSDASVLLRGESGTGKELLAQAIHQAS 191 Query: 184 ARAEQPFIAVNCGAIPEQLLESELFGHVKGAFTGAVEHREGLFQAAHGGTLFLDEIGDMP 243 ARA +PFIAVNCGAIPE LLESELFGHVKGAFT AV + +GLFQAA GGTL LDEIGDMP Sbjct: 192 ARAAKPFIAVNCGAIPEALLESELFGHVKGAFTDAVSNHKGLFQAADGGTLLLDEIGDMP 251 Query: 244 LPLQVKLLRVLQEKTVRQVGANQAGEVDVRIISATHRDLEAAMREGQFREDLYYRLNVVT 303 LQVKLLRVLQE VR VGA+Q+ VDVRIISATHRDL+AAM G FR DLYYRLNVVT Sbjct: 252 PALQVKLLRVLQEHEVRPVGASQSIAVDVRIISATHRDLDAAMAAGDFRADLYYRLNVVT 311 Query: 304 LHLPALEERREDIALLANHFLKTIAAKYPKRLTGFAPDALEILSLAHWPGNVRQLYNVVE 363 L LP L ERREDIALLANHFL T+AAKY KRL+ FAP+AL+ L+ A WPGNVRQLYNVVE Sbjct: 312 LTLPPLSERREDIALLANHFLVTLAAKYDKRLSSFAPEALKALTTAAWPGNVRQLYNVVE 371 Query: 364 QVCALSTAPLIPASLVQRALRTPTLDLLRYAEAKQKFERDYLIRLLKLTDGNVSDAARLA 423 QVCALST PL+P +LVQRALR+P++ +L +AEAKQ+FERDYL+ LLKLTDGNV+DAARLA Sbjct: 372 QVCALSTTPLVPLALVQRALRSPSIQVLTFAEAKQRFERDYLVGLLKLTDGNVADAARLA 431 Query: 424 DRNRTEFYRLLQKNGLDPRRFRG 446 DRNRTEFYRL+QK+GL P F+ Sbjct: 432 DRNRTEFYRLMQKHGLTPGHFKA 454 >ref|YP_547967.1| Fis family two component sigma-54 specific transcriptional regulator [Polaromonas sp. JS666] gb|ABE43069.1| two component, sigma54 specific, transcriptional regulator, Fis family [Polaromonas sp. JS666] Length = 466 Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/443 (71%), Positives = 377/443 (85%), Gaps = 3/443 (0%) Query: 7 LMLVDDDPDLLRLLTLRLNASGYRILAVESAEAALAQLAISLPALVITDVRLPGMDGLAL 66 L++VDDDPD+LRLLT+RL A+GYR+ AV SAEAA+ QL I P LV++DV+LPG DGLAL Sbjct: 18 LLVVDDDPDMLRLLTIRLTAAGYRVTAVTSAEAAMTQLHIERPQLVLSDVQLPGRDGLAL 77 Query: 67 FAEIRSRYPALPVILLTAHGTIPDAVDATTQGAFAYLTKPFDGHVLLDKVAQALSLAAP- 125 F +IR+R+P+LPVILLTAHGTIPDAV+AT +G F YLTKPFDG LLDK+AQAL+L+AP Sbjct: 78 FDDIRARHPSLPVILLTAHGTIPDAVEATERGVFTYLTKPFDGKGLLDKIAQALALSAPS 137 Query: 126 --APLSPDQSWRADILSRSQRVAELLAEARLVAASDASILIRGDSGTGKELLGRAIHRAS 183 A ++W+ I+SRS R+AE LAEAR+++ SDAS+L+RG+SGTGKELL +AIH+AS Sbjct: 138 HPAKRGSPEAWQHQIISRSSRMAEALAEARMISQSDASVLLRGESGTGKELLAQAIHQAS 197 Query: 184 ARAEQPFIAVNCGAIPEQLLESELFGHVKGAFTGAVEHREGLFQAAHGGTLFLDEIGDMP 243 RA +PFIAVNCGAIPE LLESELFGHVKGAFT AV +GLFQAA GGTL LDEIGDMP Sbjct: 198 PRAGKPFIAVNCGAIPEALLESELFGHVKGAFTDAVASHKGLFQAADGGTLLLDEIGDMP 257 Query: 244 LPLQVKLLRVLQEKTVRQVGANQAGEVDVRIISATHRDLEAAMREGQFREDLYYRLNVVT 303 LQVKLLRVLQE+ VR +G++Q+ VDVRIISATHRDL+AAM EGQFR DLYYRLNVVT Sbjct: 258 PALQVKLLRVLQERVVRPLGSSQSIPVDVRIISATHRDLDAAMAEGQFRADLYYRLNVVT 317 Query: 304 LHLPALEERREDIALLANHFLKTIAAKYPKRLTGFAPDALEILSLAHWPGNVRQLYNVVE 363 L LP L ERREDI LLANHFL +A KY KRL+GFAP+A++ L+ A WPGNVRQLYNVVE Sbjct: 318 LTLPPLSERREDIPLLANHFLIKLANKYDKRLSGFAPEAIKALTTAAWPGNVRQLYNVVE 377 Query: 364 QVCALSTAPLIPASLVQRALRTPTLDLLRYAEAKQKFERDYLIRLLKLTDGNVSDAARLA 423 QVCALST PL+P +LVQRALR+P++ +L +AEA+Q+FERDYL+ LLKLTDGNV+DAARLA Sbjct: 378 QVCALSTTPLVPLALVQRALRSPSVQVLTFAEARQRFERDYLVGLLKLTDGNVADAARLA 437 Query: 424 DRNRTEFYRLLQKNGLDPRRFRG 446 DRNRTEFYRL+QK+GL P F+ Sbjct: 438 DRNRTEFYRLMQKHGLTPGHFKA 460 >ref|ZP_08406638.1| two component, sigma54 specific, Fis family transcriptional regulator [Hylemonella gracilis ATCC 19624] gb|EGI76270.1| two component, sigma54 specific, Fis family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 491 Score = 635 bits (1637), Expect = e-180, Method: Compositional matrix adjust. Identities = 320/464 (68%), Positives = 383/464 (82%), Gaps = 13/464 (2%) Query: 4 TAPLMLVDDDPDLLRLLTLRLNASGYRILAVESAEAALAQLAISLPALVITDVRLPGMDG 63 ++ L++VDDD D+LRLLTLRL A+GYR+L SAE AL QLA+ P LV++DVRLPG DG Sbjct: 6 SSTLLVVDDDADMLRLLTLRLEAAGYRVLTAASAETALTQLALERPQLVLSDVRLPGKDG 65 Query: 64 LALFAEIRSRYPALPVILLTAHGTIPDAVDATTQGAFAYLTKPFDGHVLLDKVAQALSLA 123 LALF EI +++P LPVILLTAHG+IPDAV+AT++G + YLTKPF+G LLDK+AQAL+L Sbjct: 66 LALFDEIHAQHPMLPVILLTAHGSIPDAVEATSRGVYTYLTKPFEGKELLDKIAQALALH 125 Query: 124 APAPLSP--------DQSWRADILSRSQRVAELLAEARLVAASDASILIRGDSGTGKELL 175 + ++ WRADI+SRS R+AELLAE R+VA SDAS+L+RGDSGTGKELL Sbjct: 126 SAHAADTASAASSAANEPWRADIISRSARMAELLAETRMVARSDASVLLRGDSGTGKELL 185 Query: 176 GRAIHRASARAEQPFIAVNCGAIPEQLLESELFGHVKGAFTGAVEHREGLFQAAHGGTLF 235 RAIH ASARA++PF+AVNCGAIPE LLESELFGHVKGAFT A + +GLFQAA GGTL Sbjct: 186 ARAIHNASARAKKPFVAVNCGAIPENLLESELFGHVKGAFTDAHTNHKGLFQAADGGTLL 245 Query: 236 LDEIGDMPLPLQVKLLRVLQEKTVRQVGANQAGEVDVRIISATHRDLEAAMREGQFREDL 295 LDEIGDMPL LQVKLLRVLQE+ VR +GA Q+ VDVRI+SATHRDL+ A+ GQFREDL Sbjct: 246 LDEIGDMPLALQVKLLRVLQERAVRPLGAAQSIPVDVRIVSATHRDLDTALAAGQFREDL 305 Query: 296 YYRLNVVTLHLPALEERREDIALLANHFLKTIAAKY-----PKRLTGFAPDALEILSLAH 350 YYRLNVVTLHLP L ERREDI LLANHFL+ +A KY ++L GFAP+AL+ L+ A Sbjct: 306 YYRLNVVTLHLPTLAERREDIPLLANHFLRKLAGKYGNEDRGRKLAGFAPEALKALATAP 365 Query: 351 WPGNVRQLYNVVEQVCALSTAPLIPASLVQRALRTPTLDLLRYAEAKQKFERDYLIRLLK 410 WPGNVRQL+NVVEQVCAL+T PL+P +LVQRALRTP++++L YAEAKQ+FERDYL+ LLK Sbjct: 366 WPGNVRQLHNVVEQVCALATTPLVPLTLVQRALRTPSVEVLSYAEAKQRFERDYLVNLLK 425 Query: 411 LTDGNVSDAARLADRNRTEFYRLLQKNGLDPRRFRGGEEAVVAG 454 LTDG+V+DAARLADRNRTEFYRLLQK+GL P RF+ G + +AG Sbjct: 426 LTDGHVADAARLADRNRTEFYRLLQKHGLTPGRFKTGGDTSIAG 469 >ref|YP_004620574.1| response regulator NtrC [Ramlibacter tataouinensis TTB310] gb|AEG94555.1| candidate response regulator, NtrC [Ramlibacter tataouinensis TTB310] Length = 470 Score = 621 bits (1602), Expect = e-176, Method: Compositional matrix adjust. Identities = 330/463 (71%), Positives = 391/463 (84%), Gaps = 7/463 (1%) Query: 5 APLMLVDDDPDLLRLLTLRLNASGYRILAVESAEAALAQLAISLPALVITDVRLPGMDGL 64 A +++VDDD D+LRLL++RL A+GY++ AV SAEAALAQLA+ P LV++DVRLPG DGL Sbjct: 6 ARILVVDDDADMLRLLSMRLGAAGYQVRAVGSAEAALAQLALERPQLVLSDVRLPGRDGL 65 Query: 65 ALFAEIRSRYPALPVILLTAHGTIPDAVDATTQGAFAYLTKPFDGHVLLDKVAQALSLAA 124 ALF EIR+R+P+LPVILLTAHGTIPDAV+AT +G F YLTKP+DG LLDK+AQAL+L A Sbjct: 66 ALFDEIRARHPSLPVILLTAHGTIPDAVEATARGVFTYLTKPYDGRELLDKIAQALALTA 125 Query: 125 PAPLSP--DQSWRADILSRSQRVAELLAEARLVAASDASILIRGDSGTGKELLGRAIHRA 182 PAP + D+ WR D++SRS R+AELLAEAR+VAASDAS+L+RGDSGTGKE+L RAIH+A Sbjct: 126 PAPAAAPADEGWRIDVISRSARMAELLAEARMVAASDASVLLRGDSGTGKEMLARAIHKA 185 Query: 183 SARAEQPFIAVNCGAIPEQLLESELFGHVKGAFTGAVEHREGLFQAAHGGTLFLDEIGDM 242 S R +PF+AVNCGAIPE LLESELFGH+KGAFT AV + +GLFQAA GGTL LDEIGDM Sbjct: 186 SPRTRRPFVAVNCGAIPEALLESELFGHMKGAFTDAVANHKGLFQAADGGTLLLDEIGDM 245 Query: 243 PLPLQVKLLRVLQEKTVRQVGANQAGEVDVRIISATHRDLEAAMREGQFREDLYYRLNVV 302 P LQVKLLRVLQE+ VR +G++Q+ VDVRIISATHR+LEAAM GQFREDLYYRLNVV Sbjct: 246 PPALQVKLLRVLQERAVRPLGSSQSIPVDVRIISATHRNLEAAMAAGQFREDLYYRLNVV 305 Query: 303 TLHLPALEERREDIALLANHFLKTIAAKYPKRLTGFAPDALEILSLAHWPGNVRQLYNVV 362 TL LP L ERREDI LLANHFL +A KY +RL+GFAP+AL+ L+ A WPGNVRQLYNVV Sbjct: 306 TLSLPTLAERREDIPLLANHFLHKLATKYGRRLSGFAPEALKALTTAAWPGNVRQLYNVV 365 Query: 363 EQVCALSTAPLIPASLVQRALRTPTLDLLRYAEAKQKFERDYLIRLLKLTDGNVSDAARL 422 EQVCALST PL+P +LVQRALR P++++L YAEAKQ+FER+YL+ LLKLTDGNV+DAARL Sbjct: 366 EQVCALSTTPLVPLALVQRALRVPSVEVLTYAEAKQRFEREYLVGLLKLTDGNVADAARL 425 Query: 423 ADRNRTEFYRLLQKNGLDPRRFRG----GEEAVVAG-RQEERL 460 A RNRTEFYRLLQKN L P F+G G + V G RQ++ L Sbjct: 426 AGRNRTEFYRLLQKNELTPGHFKGDSVAGAQTPVTGLRQDDSL 468