BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0423.p (224 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778077.1| cyclic nucleotide-binding protein [Herbaspir... 449 e-124 gb|ABK64024.1| putative transcriptional regulator [Janthinobacte... 330 7e-89 gb|ABK64109.1| putative transcriptional regulator [Janthinobacte... 328 3e-88 ref|YP_840668.1| cNMP regulatory protein [Ralstonia eutropha H16... 324 8e-87 ref|YP_004681304.1| transcriptional regulator [Cupriavidus necat... 323 1e-86 ref|YP_002007714.1| cyclic nucleotide-binding protein [Cupriavid... 322 3e-86 ref|YP_587895.1| transcriptional regulator with cAMP binding dom... 320 7e-86 ref|YP_298506.1| cyclic nucleotide-binding protein [Ralstonia eu... 318 5e-85 ref|YP_002980002.1| Crp/Fnr family transcriptional regulator [Ra... 317 8e-85 ref|ZP_07674915.1| cyclic nucleotide-binding protein [Ralstonia ... 316 2e-84 >ref|YP_003778077.1| cyclic nucleotide-binding protein [Herbaspirillum seropedicae SmR1] gb|ADJ66169.1| cyclic nucleotide-binding protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 221/224 (98%), Positives = 222/224 (99%) Query: 1 MAQLLQQYDWFAALASEHRALAAATTQRVRYAADAFVARRGELSQYWIGVHEGLIKLAVY 60 MAQLLQQYDWFAALASEHRALAAATTQRVRYAADAFVARRGELSQYWIGVHEGLIKLAVY Sbjct: 1 MAQLLQQYDWFAALASEHRALAAATTQRVRYAADAFVARRGELSQYWIGVHEGLIKLAVY 60 Query: 61 NIDGRSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIRTSQILLVPADTFHRLMAESLPFN 120 NIDGRSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIR SQILLVPADTFH LMAESLPFN Sbjct: 61 NIDGRSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIRASQILLVPADTFHCLMAESLPFN 120 Query: 121 AFVIGQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQEEIGLL 180 AFVIGQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQEEIGLL Sbjct: 121 AFVIGQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQEEIGLL 180 Query: 181 TGLSRQRVNQAMRRLAELGLVEISYQSIRVIDLDGLRAFGMASL 224 TGLSRQRVNQAMRRLAELGLVEISYQSIRV+DLDGLRAFGMASL Sbjct: 181 TGLSRQRVNQAMRRLAELGLVEISYQSIRVVDLDGLRAFGMASL 224 >gb|ABK64024.1| putative transcriptional regulator [Janthinobacterium lividum] Length = 233 Score = 330 bits (847), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 160/220 (72%), Positives = 184/220 (83%) Query: 5 LQQYDWFAALASEHRALAAATTQRVRYAADAFVARRGELSQYWIGVHEGLIKLAVYNIDG 64 L +DWF AL S H++L A + Y A AF+ RRGE S WIGVH GLIKLA+YN+DG Sbjct: 14 LDSHDWFTALDSRHQSLLRAGSVLRHYEAGAFITRRGEPSARWIGVHTGLIKLAIYNVDG 73 Query: 65 RSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIRTSQILLVPADTFHRLMAESLPFNAFVI 124 R +T SGVP GGWCGEGSV+KRE RRYDV+A+R + I+LVPAD FH L+AESL FNAFVI Sbjct: 74 RGATFSGVPAGGWCGEGSVLKRELRRYDVVAVRAADIILVPADLFHLLLAESLSFNAFVI 133 Query: 125 GQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQEEIGLLTGLS 184 QLNERMGQFIAT+QN+RLL VDA+VAQAIAQLFHPMLYPRTS VLELSQEEIGLLTG+S Sbjct: 134 RQLNERMGQFIATIQNQRLLAVDAQVAQAIAQLFHPMLYPRTSSVLELSQEEIGLLTGIS 193 Query: 185 RQRVNQAMRRLAELGLVEISYQSIRVIDLDGLRAFGMASL 224 RQRVN A+ RLAEL L+ I+YQSIRV+DLDGLR +G+ASL Sbjct: 194 RQRVNLALGRLAELKLISIAYQSIRVVDLDGLRHYGVASL 233 >gb|ABK64109.1| putative transcriptional regulator [Janthinobacterium lividum] Length = 233 Score = 328 bits (842), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 159/220 (72%), Positives = 183/220 (83%) Query: 5 LQQYDWFAALASEHRALAAATTQRVRYAADAFVARRGELSQYWIGVHEGLIKLAVYNIDG 64 L +DWF AL + H+AL A + Y A AF+ RRGE S +WIGVH GLIKLAVYN DG Sbjct: 14 LDSHDWFTALDTRHQALLRAGSVIRHYEAGAFITRRGEPSAHWIGVHTGLIKLAVYNADG 73 Query: 65 RSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIRTSQILLVPADTFHRLMAESLPFNAFVI 124 R +T SGVP GGWCGEGSV+KRE RRYDV+A+R + I+LVP D FH L+AESL FNAFVI Sbjct: 74 RGATFSGVPAGGWCGEGSVLKRELRRYDVVAVRAANIILVPVDLFHLLLAESLSFNAFVI 133 Query: 125 GQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQEEIGLLTGLS 184 QLNERMGQFIAT+QN+RLL VDA+VAQAIAQLFHPMLYPRTS VLELSQEEIG+LTG+S Sbjct: 134 RQLNERMGQFIATIQNQRLLAVDAQVAQAIAQLFHPMLYPRTSSVLELSQEEIGMLTGIS 193 Query: 185 RQRVNQAMRRLAELGLVEISYQSIRVIDLDGLRAFGMASL 224 RQRVN A+ RLAEL L+ I+YQSIRV+DLDGLR +G+ASL Sbjct: 194 RQRVNLALGRLAELKLISIAYQSIRVVDLDGLRRYGVASL 233 >ref|YP_840668.1| cNMP regulatory protein [Ralstonia eutropha H16] emb|CAJ95938.1| cNMP regulatory protein [Ralstonia eutropha H16] Length = 289 Score = 324 bits (830), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 162/223 (72%), Positives = 182/223 (81%) Query: 2 AQLLQQYDWFAALASEHRALAAATTQRVRYAADAFVARRGELSQYWIGVHEGLIKLAVYN 61 A +L + WF ALA EH+ALAA T +AA AF+ARRGE S++WIGV GLIKLAVY Sbjct: 67 AAVLAGHAWFGALAPEHQALAARETLLQSFAAGAFIARRGEPSRHWIGVDSGLIKLAVYT 126 Query: 62 IDGRSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIRTSQILLVPADTFHRLMAESLPFNA 121 DGR T SGVP GGWCGEGSVIKRE RRYDVIAIR SQ+LLVP F+ L+A+SLPF + Sbjct: 127 PDGRGCTFSGVPAGGWCGEGSVIKREDRRYDVIAIRDSQVLLVPEPVFNTLLAQSLPFAS 186 Query: 122 FVIGQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQEEIGLLT 181 FV+ QLNERMGQFIATVQN+RLL DARVAQAIAQLFHP LYPRTS VLELSQEEIGLLT Sbjct: 187 FVVRQLNERMGQFIATVQNDRLLGADARVAQAIAQLFHPDLYPRTSPVLELSQEEIGLLT 246 Query: 182 GLSRQRVNQAMRRLAELGLVEISYQSIRVIDLDGLRAFGMASL 224 GLSRQRVNQA+RRLA+ G+V +SYQSIRV DL LR FG++ L Sbjct: 247 GLSRQRVNQALRRLADAGMVHLSYQSIRVTDLPRLRHFGLSEL 289 >ref|YP_004681304.1| transcriptional regulator [Cupriavidus necator N-1] gb|AEI80072.1| transcriptional regulator [Cupriavidus necator N-1] Length = 234 Score = 323 bits (828), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 162/223 (72%), Positives = 182/223 (81%) Query: 2 AQLLQQYDWFAALASEHRALAAATTQRVRYAADAFVARRGELSQYWIGVHEGLIKLAVYN 61 A +L + WF ALA EH+ALAA T +AA AF+ARRGE S++WIGV GLIKLAVY Sbjct: 12 AAVLAGHAWFGALAPEHQALAARETLLQSFAAGAFIARRGEPSRHWIGVDSGLIKLAVYT 71 Query: 62 IDGRSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIRTSQILLVPADTFHRLMAESLPFNA 121 DGR T SGVP GGWCGEGSVIKRE RRYDVIAIR SQ+LLVP F+ L+A+SLPF + Sbjct: 72 PDGRGCTFSGVPAGGWCGEGSVIKREDRRYDVIAIRDSQVLLVPEPVFNMLLAQSLPFAS 131 Query: 122 FVIGQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQEEIGLLT 181 FV+ QLNERMGQFIATVQN+RLL DARVAQAIAQLFHP LYPRTS VLELSQEEIGLLT Sbjct: 132 FVVRQLNERMGQFIATVQNDRLLGADARVAQAIAQLFHPDLYPRTSPVLELSQEEIGLLT 191 Query: 182 GLSRQRVNQAMRRLAELGLVEISYQSIRVIDLDGLRAFGMASL 224 GLSRQRVNQA+RRLA+ G+V +SYQSIRV DL LR FG++ L Sbjct: 192 GLSRQRVNQALRRLADAGMVHLSYQSIRVTDLPRLRHFGLSEL 234 >ref|YP_002007714.1| cyclic nucleotide-binding protein [Cupriavidus taiwanensis LMG 19424] emb|CAQ71657.1| putative cyclic nucleotide-binding protein [Cupriavidus taiwanensis LMG 19424] Length = 238 Score = 322 bits (824), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 161/223 (72%), Positives = 180/223 (80%) Query: 2 AQLLQQYDWFAALASEHRALAAATTQRVRYAADAFVARRGELSQYWIGVHEGLIKLAVYN 61 A +L + WF LA H+ALAA T +AA +F+ARRGE S++WIGV GLIKLAVY Sbjct: 16 AAVLAGHAWFGELAPAHQALAARETLLQSFAASSFIARRGEPSRHWIGVDSGLIKLAVYT 75 Query: 62 IDGRSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIRTSQILLVPADTFHRLMAESLPFNA 121 DGR T SGVP GGWCGEGSVIKRE RRYDVIAIR SQ+LLVP F+ L+AESLPF + Sbjct: 76 PDGRGCTFSGVPAGGWCGEGSVIKREDRRYDVIAIRDSQVLLVPEPVFNTLLAESLPFAS 135 Query: 122 FVIGQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQEEIGLLT 181 FV+ QLNERMGQFIATVQN+RLL DARVAQAIAQLFHP LYPRTS VLELSQEEIGLLT Sbjct: 136 FVVRQLNERMGQFIATVQNDRLLGADARVAQAIAQLFHPDLYPRTSPVLELSQEEIGLLT 195 Query: 182 GLSRQRVNQAMRRLAELGLVEISYQSIRVIDLDGLRAFGMASL 224 GLSRQRVNQA+RRLA+ G+V +SYQSIRV DL LR FGM+ L Sbjct: 196 GLSRQRVNQALRRLADAGMVHLSYQSIRVTDLPRLRHFGMSEL 238 >ref|YP_587895.1| transcriptional regulator with cAMP binding domain belongs to HTH Crp family [Cupriavidus metallidurans CH34] gb|ABF12626.1| putative transcriptional regulator with cAMP binding domain belongs to HTH Crp family [Cupriavidus metallidurans CH34] Length = 253 Score = 320 bits (821), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 154/221 (69%), Positives = 181/221 (81%) Query: 4 LLQQYDWFAALASEHRALAAATTQRVRYAADAFVARRGELSQYWIGVHEGLIKLAVYNID 63 LL Q+DWF AL+ H+ALAA+ T Y A ++ARRGE S+YWIGV GLIKLAVY D Sbjct: 33 LLAQHDWFCALSPAHQALAASETVVREYPAGGYIARRGEFSRYWIGVDTGLIKLAVYTPD 92 Query: 64 GRSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIRTSQILLVPADTFHRLMAESLPFNAFV 123 GR T SGVP GGWCGEGSVIKRE RRYDVIAIR S++LLVP F+ L+++SLPF FV Sbjct: 93 GRGCTFSGVPAGGWCGEGSVIKREDRRYDVIAIRDSRVLLVPEAVFNMLLSDSLPFAGFV 152 Query: 124 IGQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQEEIGLLTGL 183 + QLNERMGQFIATVQN+RLL DARVAQA+AQLFHP LYP+T++VLELSQEEIGLLTGL Sbjct: 153 VRQLNERMGQFIATVQNDRLLGADARVAQAVAQLFHPALYPKTTEVLELSQEEIGLLTGL 212 Query: 184 SRQRVNQAMRRLAELGLVEISYQSIRVIDLDGLRAFGMASL 224 SRQRVNQA+RRL G+V ++YQ+IRV DL+GLR FG++ L Sbjct: 213 SRQRVNQALRRLEAGGMVSLAYQTIRVTDLEGLRRFGLSEL 253 >ref|YP_298506.1| cyclic nucleotide-binding protein [Ralstonia eutropha JMP134] gb|AAZ63662.1| Cyclic nucleotide-binding protein [Ralstonia eutropha JMP134] Length = 232 Score = 318 bits (814), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 159/220 (72%), Positives = 180/220 (81%) Query: 5 LQQYDWFAALASEHRALAAATTQRVRYAADAFVARRGELSQYWIGVHEGLIKLAVYNIDG 64 L + WF ALA EH+ALAA T +AA AF+ARRGE S+ WIGV GLIKLAVY DG Sbjct: 13 LAGHAWFHALAPEHQALAARETVLKEFAAGAFIARRGEPSRDWIGVDSGLIKLAVYTPDG 72 Query: 65 RSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIRTSQILLVPADTFHRLMAESLPFNAFVI 124 R T SGVP GGWCGEGSVIKRE RRYDVIAIR S++LLVP F+ L+A+SLPF++FV+ Sbjct: 73 RGCTFSGVPAGGWCGEGSVIKRELRRYDVIAIRDSRVLLVPEPVFNTLLAQSLPFSSFVV 132 Query: 125 GQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQEEIGLLTGLS 184 QLNERMGQFIATVQN+RLL DARVAQAIAQLFHP LYPRTS VLELSQEEIGLLTGLS Sbjct: 133 TQLNERMGQFIATVQNDRLLSADARVAQAIAQLFHPSLYPRTSPVLELSQEEIGLLTGLS 192 Query: 185 RQRVNQAMRRLAELGLVEISYQSIRVIDLDGLRAFGMASL 224 RQRVNQA+RRLA+ GLV ++YQ+IRV DL LR FG++ L Sbjct: 193 RQRVNQALRRLADDGLVHLAYQTIRVTDLPRLRHFGLSEL 232 >ref|YP_002980002.1| Crp/Fnr family transcriptional regulator [Ralstonia pickettii 12D] gb|ACS61330.1| transcriptional regulator, Crp/Fnr family [Ralstonia pickettii 12D] Length = 232 Score = 317 bits (812), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 157/223 (70%), Positives = 180/223 (80%) Query: 2 AQLLQQYDWFAALASEHRALAAATTQRVRYAADAFVARRGELSQYWIGVHEGLIKLAVYN 61 A L+ + WF ALA EH+ALAA T + AF+ARRGE S+YWIGV GLIKLAVY Sbjct: 10 ATQLEGHAWFTALAPEHQALAARETLLQAFEPGAFIARRGEPSRYWIGVDTGLIKLAVYT 69 Query: 62 IDGRSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIRTSQILLVPADTFHRLMAESLPFNA 121 DGR T SGVP GGWCGEGSVIKRE RRYDVIAIR S +LLVP F+ L+A+SLPF + Sbjct: 70 ADGRGCTFSGVPAGGWCGEGSVIKREDRRYDVIAIRASHVLLVPEPVFNTLLAQSLPFAS 129 Query: 122 FVIGQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQEEIGLLT 181 FV+ QLNERMGQFIATVQN+RLL DARVAQAIAQLFHP LYPRTS VLELSQEEIGLLT Sbjct: 130 FVVRQLNERMGQFIATVQNDRLLSADARVAQAIAQLFHPALYPRTSTVLELSQEEIGLLT 189 Query: 182 GLSRQRVNQAMRRLAELGLVEISYQSIRVIDLDGLRAFGMASL 224 GLSRQRVN+A++RLAE G++ +SYQ+IRV DL+ LR FG++ L Sbjct: 190 GLSRQRVNRALQRLAEGGMIALSYQTIRVTDLERLRLFGLSEL 232 >ref|ZP_07674915.1| cyclic nucleotide-binding protein [Ralstonia sp. 5_7_47FAA] gb|EFP66513.1| cyclic nucleotide-binding protein [Ralstonia sp. 5_7_47FAA] Length = 269 Score = 316 bits (809), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 156/223 (69%), Positives = 179/223 (80%) Query: 2 AQLLQQYDWFAALASEHRALAAATTQRVRYAADAFVARRGELSQYWIGVHEGLIKLAVYN 61 A LQ + W+ ALA EH+ALA T + AF+ARRGE S+YWIGV GLIKLAVY Sbjct: 47 ATQLQGHAWYTALAPEHQALAGRETLLQAFEPGAFIARRGEPSRYWIGVDTGLIKLAVYT 106 Query: 62 IDGRSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIRTSQILLVPADTFHRLMAESLPFNA 121 DGR T SGVP GGWCGEGSVIKRE RRYDVIAIR S +LLVP F+ L+A+SLPF + Sbjct: 107 SDGRGCTFSGVPAGGWCGEGSVIKREDRRYDVIAIRASHVLLVPEPVFNTLLAQSLPFAS 166 Query: 122 FVIGQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQEEIGLLT 181 FV+ QLNERMGQFIATVQN+RLL DARVAQAIAQLFHP LYPRTS VLELSQEEIGLLT Sbjct: 167 FVVRQLNERMGQFIATVQNDRLLSADARVAQAIAQLFHPALYPRTSTVLELSQEEIGLLT 226 Query: 182 GLSRQRVNQAMRRLAELGLVEISYQSIRVIDLDGLRAFGMASL 224 GLSRQRVN+A++RLAE G++ +SYQ+IRV DL+ LR FG++ L Sbjct: 227 GLSRQRVNRALQRLAEGGMIALSYQTIRVTDLERLRLFGLSEL 269