BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0422.p (232 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778076.1| hypothetical protein Hsero_4702 [Herbaspiril... 447 e-124 gb|ABK64112.1| conserved hypothetical protein [Janthinobacterium... 121 8e-26 gb|ACS75343.1| hypothetical protein [Janthinobacterium lividum] 120 1e-25 ref|YP_002980001.1| hypothetical protein Rpic12D_0017 [Ralstonia... 86 6e-15 ref|YP_001897619.1| hypothetical protein Rpic_0022 [Ralstonia pi... 84 2e-14 ref|YP_840667.1| transcriptional regulator [Ralstonia eutropha H... 82 4e-14 ref|YP_004681303.1| AraC family transcriptional regulator [Cupri... 81 1e-13 ref|YP_002007713.1| hypothetical protein RALTA_B1049 [Cupriavidu... 76 5e-12 ref|YP_298507.1| hypothetical protein Reut_B4310 [Ralstonia eutr... 73 3e-11 >ref|YP_003778076.1| hypothetical protein Hsero_4702 [Herbaspirillum seropedicae SmR1] gb|ADJ66168.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 232 Score = 447 bits (1151), Expect = e-124, Method: Compositional matrix adjust. Identities = 229/232 (98%), Positives = 229/232 (98%) Query: 1 MAIVTHHHLHLHDLRFAAPARVRVWKGAATLKSGGVAVELAEGESFTVPSFVRFACLAHP 60 MAIVTHHHLHLHDLRFAAPARVRVWKGAATLKSGGVAVEL EGESFTVPSFVRFACLAHP Sbjct: 1 MAIVTHHHLHLHDLRFAAPARVRVWKGAATLKSGGVAVELGEGESFTVPSFVRFACLAHP 60 Query: 61 RVSAQGMRPAVWSLALETQSSADLERAADTSKPHARRLAAAIFAQPAAHWCAERIAGDWQ 120 RVSAQGMRPAVWSLALETQSSADLERAADTSKPHARRLAAAIFAQPAAHWCAERIAGDWQ Sbjct: 61 RVSAQGMRPAVWSLALETQSSADLERAADTSKPHARRLAAAIFAQPAAHWCAERIAGDWQ 120 Query: 121 LSTARLRALLFAEGESLRSLVREQRVAWVLAQLARMDDAGAASAPAPAAAGFATLPALQR 180 LSTARLRALLFAEGESLRSLVREQRVAWVLAQLARMDDAGAASAPAPAAAGFATLPALQR Sbjct: 121 LSTARLRALLFAEGESLRSLVREQRVAWVLAQLARMDDAGAASAPAPAAAGFATLPALQR 180 Query: 181 ACQDLIGLPPATASRAISLLSSSVAPAALPAIGAAQHPGGDAPRQPRYRPYF 232 ACQDLIGLPP TASRAISLLSSSVAPAALPAIGAAQH GGDAPRQPRYRPYF Sbjct: 181 ACQDLIGLPPGTASRAISLLSSSVAPAALPAIGAAQHSGGDAPRQPRYRPYF 232 >gb|ABK64112.1| conserved hypothetical protein [Janthinobacterium lividum] Length = 197 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 83/200 (41%), Positives = 113/200 (56%), Gaps = 11/200 (5%) Query: 1 MAIVTHHHLHLHDLRFAAPARVRVWKGAATLKSGGVAVELAEGESFTVPSFVRFACLAHP 60 MA+V+ H LHL LRF RV V +G TL + +LA G+SF VP+F+RFAC P Sbjct: 1 MALVSDHPLHLLGLRFPLRLRVTVRQGFVTLHNEIATKKLASGDSFVVPAFLRFACDVMP 60 Query: 61 RVSAQGMRPAVWSLALETQSSADLERAADTSKPHARRLAAAIFAQPAAHWCAERIAGDWQ 120 +G +PAV++LALE A+ + K ++ LA IF P W A R+A WQ Sbjct: 61 ---GRG-KPAVFTLALE---GAETDGGHGGGKRWSQALAQHIFDTPQGKWTAARLAALWQ 113 Query: 121 LSTARLRALLFAEGESLRSLVREQRVAWVLAQLARMDDAGAAS----APAPAAAGFATLP 176 ++ + RA LF+EGE+L SLVREQR+A L A+ D G A A +GFA++P Sbjct: 114 VTPHKARARLFSEGEALLSLVREQRLAHALHTAAQADADGEDGERDLAQVAAGSGFASIP 173 Query: 177 ALQRACQDLIGLPPATASRA 196 A AC D+ G+ P+ R Sbjct: 174 AFCDACVDVAGVRPSLFLRG 193 >gb|ACS75343.1| hypothetical protein [Janthinobacterium lividum] Length = 197 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/200 (41%), Positives = 113/200 (56%), Gaps = 11/200 (5%) Query: 1 MAIVTHHHLHLHDLRFAAPARVRVWKGAATLKSGGVAVELAEGESFTVPSFVRFACLAHP 60 MA+V+ H LHL LRF RV V +G TL + +LA G+SF VP+F+RFAC P Sbjct: 1 MALVSDHPLHLLGLRFPLRLRVTVRQGFVTLHNEITTKKLASGDSFVVPAFLRFACDVMP 60 Query: 61 RVSAQGMRPAVWSLALETQSSADLERAADTSKPHARRLAAAIFAQPAAHWCAERIAGDWQ 120 +G +PAV++LALE ++ + K ++ LA IF P W A R+A WQ Sbjct: 61 ---GRG-KPAVFTLALEGDAT---DAGHGGGKRWSQALAQHIFDTPQGKWTAARLAALWQ 113 Query: 121 LSTARLRALLFAEGESLRSLVREQRVAWVLAQLARMDDAGAAS----APAPAAAGFATLP 176 ++ + RA LF+EGE+L SLVREQR+A L A+ D G A A +GFA++P Sbjct: 114 VTPHKARARLFSEGEALLSLVREQRLAHALHTAAQADADGVHGERDLAQVAAGSGFASIP 173 Query: 177 ALQRACQDLIGLPPATASRA 196 A AC D+ G+ P+ R Sbjct: 174 AFCDACVDVAGVRPSLFLRG 193 >ref|YP_002980001.1| hypothetical protein Rpic12D_0017 [Ralstonia pickettii 12D] gb|ACS61329.1| conserved hypothetical protein [Ralstonia pickettii 12D] Length = 223 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 83/192 (43%), Gaps = 8/192 (4%) Query: 1 MAIVTHHHLHLHDLRFAAPARVRVWKGAATLKSGGVAVELAEGESFTVPSFVRFACLAHP 60 M +++ H+ L LRF RV+ +G L+ E+ G F VP+F F C Sbjct: 1 MPLISRAHVRLSRLRFPFAVRVQSEQGTVCLRDANGRREVRPGNPFVVPAFAHFGC---- 56 Query: 61 RVSAQGMRPAVWSLALETQSSADLERAADTSKPHARRLAAAIFAQPAAHWCAERIAGDWQ 120 + +P + + A KP AR A +F P W A ++ WQ Sbjct: 57 EIPGTLWQPCAITFNAVPDAGCPRMAAIQHDKPWARAFATLVFEHPVQAWNAAMLSHCWQ 116 Query: 121 LSTARLRALLFAEGESLRSLVREQRVAWVLAQLARMDDAGAASAPAPAA----AGFATLP 176 ++RA LFAEGE+L +LVREQR AWVL +LA A A A AG Sbjct: 117 ACPRQVRARLFAEGEALHALVREQRAAWVLYRLAHTCGNDEPEAEALHALARRAGLRNAR 176 Query: 177 ALQRACQDLIGL 188 L C L G+ Sbjct: 177 TLNETCASLFGV 188 >ref|YP_001897619.1| hypothetical protein Rpic_0022 [Ralstonia pickettii 12J] ref|ZP_07674916.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA] gb|ACD25187.1| conserved hypothetical protein [Ralstonia pickettii 12J] gb|EFP66514.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA] Length = 223 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/215 (30%), Positives = 89/215 (41%), Gaps = 13/215 (6%) Query: 1 MAIVTHHHLHLHDLRFAAPARVRVWKGAATLKSGGVAVELAEGESFTVPSFVRFACLAHP 60 M +++ H+ L LRF RV+ +G L+ E+ G F VP+F F C Sbjct: 1 MPLISRAHVRLSRLRFPFAVRVQSEQGTVCLRDANGRREVRPGNPFVVPAFAHFGC---- 56 Query: 61 RVSAQGMRPAVWSLALETQSSADLERAADTSKPHARRLAAAIFAQPAAHWCAERIAGDWQ 120 + +P + + A KP AR A +F P W A ++ WQ Sbjct: 57 EIPGTVWQPCAITFKAVPDAGCPRMAAIQHDKPWARAFATLVFEHPVQAWNAALLSHCWQ 116 Query: 121 LSTARLRALLFAEGESLRSLVREQRVAWVLAQLARMDDAGAASAPAPAA----AGFATLP 176 ++RA LFAEGE+L +LVREQR AW L +LA A A A AG Sbjct: 117 ACPRQVRARLFAEGEALHALVREQRAAWALYRLAHTCGNDEPEAEALHALARRAGLRNAR 176 Query: 177 ALQRACQDLIGLPPA-----TASRAISLLSSSVAP 206 L C L G+ A A L+ S AP Sbjct: 177 TLNETCASLFGVELAALLAGNADSVSGLVHGSTAP 211 >ref|YP_840667.1| transcriptional regulator [Ralstonia eutropha H16] emb|CAJ95937.1| transcriptional regulator [Ralstonia eutropha H16] Length = 213 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 67/214 (31%), Positives = 98/214 (45%), Gaps = 17/214 (7%) Query: 1 MAIVTHHHLHLHDLRFAAPARVRVWKGAATLKSGGVAVELAEGESFTVPSFVRFACLAHP 60 M +V+ HH+ LRF +V+ G A+L+ E+ G+ F V +F F C Sbjct: 1 MPLVSRHHVRFARLRFPFAVQVQALHGTASLRDANARREVRPGDPFVVHAFAHFDCDL-- 58 Query: 61 RVSAQGMRPAVW----SLALETQSSADLERAADT--SKPHARRLAAAIFAQPAAHWCAER 114 P W ++ L ++ R A +P +RR A +F++P W ER Sbjct: 59 --------PGTWQHPCAIVLTAVPDSECPRLAGKPGDRPWSRRFAGLVFSRPDTDWNVER 110 Query: 115 IAGDWQLSTARLRALLFAEGESLRSLVREQRVAWVLAQLARMDDAGAASAPAPAAAGFAT 174 +A WQ+ ++RA LFAEGE+L L+REQR A L LA + A A AG + Sbjct: 111 LAAQWQVPARQVRARLFAEGEALHPLLREQRAAHALHALAAAGPVSSLDVLA-AHAGLRS 169 Query: 175 LPALQRACQDLIGLPPATASRAISLLSSSVAPAA 208 AL R+ Q+ G+ A S + AP A Sbjct: 170 GSALARSWQNWFGIDAARLVEDCRAGSRTTAPTA 203 >ref|YP_004681303.1| AraC family transcriptional regulator [Cupriavidus necator N-1] gb|AEI80071.1| transcriptional regulator AraC family [Cupriavidus necator N-1] Length = 213 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/194 (31%), Positives = 91/194 (46%), Gaps = 17/194 (8%) Query: 1 MAIVTHHHLHLHDLRFAAPARVRVWKGAATLKSGGVAVELAEGESFTVPSFVRFACLAHP 60 M +V+ HH+ LRF V+ G A+L+ E+ G+ F V +F F C Sbjct: 1 MPLVSRHHVRFARLRFPFAVHVQALHGTASLRDANARREVRPGDPFVVHAFAHFDCDL-- 58 Query: 61 RVSAQGMRPAVW----SLALETQSSADLERAADT--SKPHARRLAAAIFAQPAAHWCAER 114 P W ++ L ++ R A +P +RR A +F++P W ER Sbjct: 59 --------PGTWQHPCAIVLTAVPDSECPRLAGKPGDRPWSRRFAGLVFSRPDTDWNVER 110 Query: 115 IAGDWQLSTARLRALLFAEGESLRSLVREQRVAWVLAQLARMDDAGAASAPAPAAAGFAT 174 +A WQ+ ++RA LFAEGE+L L+REQR A L LA + A A AG + Sbjct: 111 LAAQWQVPARQVRARLFAEGEALHPLLREQRAAHALHALAAAGPVCSLDVLA-AHAGLRS 169 Query: 175 LPALQRACQDLIGL 188 AL R+ Q+ G+ Sbjct: 170 GSALTRSWQNWFGI 183 >ref|YP_002007713.1| hypothetical protein RALTA_B1049 [Cupriavidus taiwanensis LMG 19424] emb|CAQ71656.1| conserved hypothetical protein [Cupriavidus taiwanensis LMG 19424] Length = 214 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 83/188 (44%), Gaps = 4/188 (2%) Query: 1 MAIVTHHHLHLHDLRFAAPARVRVWKGAATLKSGGVAVELAEGESFTVPSFVRFACLAHP 60 M +V+ HH+ LRF V+ G A+L+ E+ G+ F V +F F C Sbjct: 1 MPLVSRHHVRFARLRFPFAVHVQALYGTASLRDANARREVRPGDPFVVHAFAHFDC---- 56 Query: 61 RVSAQGMRPAVWSLALETQSSADLERAADTSKPHARRLAAAIFAQPAAHWCAERIAGDWQ 120 + +P L S + +R+ A +F++P W AER+A WQ Sbjct: 57 DLPGTWQQPCAVVLTAVPDSECPRLAGKPPERTWSRQFAGLVFSRPDTDWNAERLAAQWQ 116 Query: 121 LSTARLRALLFAEGESLRSLVREQRVAWVLAQLARMDDAGAASAPAPAAAGFATLPALQR 180 + +RA LFAEGE+L L+REQR A L LA A A AG + AL R Sbjct: 117 VPARLVRARLFAEGEALHPLLREQRAAHALHALASAGGLVPALDQLAAHAGLRSASALVR 176 Query: 181 ACQDLIGL 188 D G+ Sbjct: 177 GWHDWFGI 184 >ref|YP_298507.1| hypothetical protein Reut_B4310 [Ralstonia eutropha JMP134] gb|AAZ63663.1| hypothetical protein Reut_B4310 [Ralstonia eutropha JMP134] Length = 246 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 76/159 (47%), Gaps = 4/159 (2%) Query: 1 MAIVTHHHLHLHDLRFAAPARVRVWKGAATLKSGGVAVELAEGESFTVPSFVRFACLAHP 60 M +V+ + + + LRF RV +GAA L+ ++ G+ F VP+F F C Sbjct: 30 MPLVSRNPVRITRLRFPFAVRVEAVQGAARLRDVNARRDVRPGDPFVVPAFAHFDCELQ- 88 Query: 61 RVSAQGMRPAVWSLALETQSSADLERAADTSKPHARRLAAAIFAQPAAHWCAERIAGDWQ 120 +A G + A+ + A K +R LA +F P A W A +A WQ Sbjct: 89 --AAPGQTCTITFKAVPDAVCPRMN-AIHHDKHWSRTLARLVFEHPTADWNAALLAEQWQ 145 Query: 121 LSTARLRALLFAEGESLRSLVREQRVAWVLAQLARMDDA 159 ++ +RA LFAEGE+L LVREQR A LA D A Sbjct: 146 VAQRLVRARLFAEGEALHPLVREQRAARAFYMLALSDAA 184