BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0404.p (142 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778060.1| transcription regulator protein [Herbaspiril... 286 8e-76 ref|YP_004754914.1| putative transcriptional regulator [Collimon... 197 6e-49 ref|ZP_08272803.1| putative transcriptional regulator LiuR of le... 187 5e-46 ref|ZP_08400925.1| transcription regulator protein [Rubrivivax b... 172 1e-41 ref|ZP_00945554.1| probable transcriptional regulator [Ralstonia... 172 1e-41 emb|CAQ56571.1| hypothetical protein RSMK04076 [Ralstonia solana... 172 2e-41 ref|YP_003753744.1| MerR family transcriptional regulator [Ralst... 172 2e-41 gb|AEG70418.1| transcription regulator protein [Ralstonia solana... 171 3e-41 ref|YP_004684006.1| MerR family transcriptional regulator [Cupri... 171 4e-41 emb|CCA88547.1| putative transcriptional regulator, MerR family ... 171 5e-41 >ref|YP_003778060.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ66152.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 142 Score = 286 bits (731), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 142/142 (100%), Positives = 142/142 (100%) Query: 1 MPTYTITELAEEFAITPRAIRFYEDHGILNPKREGVGGRHRVYPARERTRLKLTLRGKRL 60 MPTYTITELAEEFAITPRAIRFYEDHGILNPKREGVGGRHRVYPARERTRLKLTLRGKRL Sbjct: 1 MPTYTITELAEEFAITPRAIRFYEDHGILNPKREGVGGRHRVYPARERTRLKLTLRGKRL 60 Query: 61 GFTLSEIKDLIDMYESPKDTQAQLQRFLGLLQQHREKLEQQREDLELTLSEIAAHEEECR 120 GFTLSEIKDLIDMYESPKDTQAQLQRFLGLLQQHREKLEQQREDLELTLSEIAAHEEECR Sbjct: 61 GFTLSEIKDLIDMYESPKDTQAQLQRFLGLLQQHREKLEQQREDLELTLSEIAAHEEECR 120 Query: 121 QLLTDGKPRPLGSKPRRKAVAA 142 QLLTDGKPRPLGSKPRRKAVAA Sbjct: 121 QLLTDGKPRPLGSKPRRKAVAA 142 >ref|YP_004754914.1| putative transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK64091.1| putative transcriptional regulator LiuR of leucine degradation pathway, MerR family [Collimonas fungivorans Ter331] Length = 134 Score = 197 bits (500), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 94/127 (74%), Positives = 111/127 (87%) Query: 1 MPTYTITELAEEFAITPRAIRFYEDHGILNPKREGVGGRHRVYPARERTRLKLTLRGKRL 60 MPTYTITELA EF ITPRAIRFYED G+L+PKR+G GGR+RVY RERTRLKLTLRGKRL Sbjct: 1 MPTYTITELAREFDITPRAIRFYEDQGLLSPKRDGAGGRNRVYAGRERTRLKLTLRGKRL 60 Query: 61 GFTLSEIKDLIDMYESPKDTQAQLQRFLGLLQQHREKLEQQREDLELTLSEIAAHEEECR 120 G TLSEIK L+DMY+SPKD+ QL+ FL +L +HRE LEQQRED+E+TL+EI AHE+ECR Sbjct: 61 GLTLSEIKSLVDMYDSPKDSAPQLELFLQVLARHREHLEQQREDIEVTLAEITAHEDECR 120 Query: 121 QLLTDGK 127 +LL+ G+ Sbjct: 121 RLLSSGE 127 >ref|ZP_08272803.1| putative transcriptional regulator LiuR of leucine degradation pathway, MerR family [Oxalobacteraceae bacterium IMCC9480] gb|EGF33734.1| putative transcriptional regulator LiuR of leucine degradation pathway, MerR family [Oxalobacteraceae bacterium IMCC9480] Length = 142 Score = 187 bits (475), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 89/128 (69%), Positives = 107/128 (83%), Gaps = 1/128 (0%) Query: 1 MPTYTITELAEEFAITPRAIRFYEDHGILNPKREGVGGRHRVYPARERTRLKLTLRGKRL 60 M TYTITEL+ EF ITPRAIRFYED G+L+P REG GR RVY ARERTRLKLTLRGKRL Sbjct: 1 MSTYTITELSREFDITPRAIRFYEDQGLLSPSREGASGRVRVYSARERTRLKLTLRGKRL 60 Query: 61 GFTLSEIKDLIDMYESPKDTQAQLQRFLGLLQQHREKLEQQREDLELTLSEIAAHEEECR 120 G TLSEIK L+DMYESP+DT AQ++ F+ +L QHR LE QRED+++TL+EI+AHE +CR Sbjct: 61 GLTLSEIKSLVDMYESPRDTIAQMKHFMEVLGQHRLTLEMQREDIDVTLAEISAHEAQCR 120 Query: 121 QLLTDGKP 128 ++L DG+ Sbjct: 121 KVL-DGRA 127 >ref|ZP_08400925.1| transcription regulator protein [Rubrivivax benzoatilyticus JA2] gb|EGJ09258.1| transcription regulator protein [Rubrivivax benzoatilyticus JA2] Length = 141 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 88/121 (72%), Positives = 97/121 (80%), Gaps = 3/121 (2%) Query: 3 TYTITELAEEFAITPRAIRFYEDHGILNPKREGVGGRHRVYPARERTRLKLTLRGKRLGF 62 TYTITELA+EF ITPRAIRFYED G+L P REG R+RVY R+RTRLKLTLRGKRLGF Sbjct: 10 TYTITELAQEFGITPRAIRFYEDVGLLTPAREG---RNRVYAPRDRTRLKLTLRGKRLGF 66 Query: 63 TLSEIKDLIDMYESPKDTQAQLQRFLGLLQQHREKLEQQREDLELTLSEIAAHEEECRQL 122 +L EIK L+DMYESP DT QLQ FL L HR +LEQQREDLEL L+EIA HE+ CR L Sbjct: 67 SLQEIKQLVDMYESPSDTAQQLQAFLATLAAHRRQLEQQREDLELALAEIAQHEDRCRTL 126 Query: 123 L 123 L Sbjct: 127 L 127 >ref|ZP_00945554.1| probable transcriptional regulator [Ralstonia solanacearum UW551] ref|YP_002258510.1| transcription regulator protein [Ralstonia solanacearum IPO1609] gb|EAP71994.1| probable transcriptional regulator [Ralstonia solanacearum UW551] emb|CAQ60433.1| transcription regulator protein [Ralstonia solanacearum IPO1609] Length = 165 Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 86/138 (62%), Positives = 104/138 (75%) Query: 3 TYTITELAEEFAITPRAIRFYEDHGILNPKREGVGGRHRVYPARERTRLKLTLRGKRLGF 62 ++TIT+LA EF ITPRAIRFYED G+L+P R+G GGR RVY ARERTRLKLTLRGKRLG Sbjct: 28 SFTITDLAREFDITPRAIRFYEDQGLLSPDRQGPGGRRRVYSARERTRLKLTLRGKRLGL 87 Query: 63 TLSEIKDLIDMYESPKDTQAQLQRFLGLLQQHREKLEQQREDLELTLSEIAAHEEECRQL 122 +L EIK+++D+YESP+DT QL+RFL L QHR L QQ EDL L+EI HE +CRQL Sbjct: 88 SLGEIKEILDLYESPRDTVPQLERFLASLAQHRAVLTQQLEDLNAQLAEIDQHEAQCRQL 147 Query: 123 LTDGKPRPLGSKPRRKAV 140 L + + + RRKA Sbjct: 148 LDEARGGGAKASKRRKAA 165 >emb|CAQ56571.1| hypothetical protein RSMK04076 [Ralstonia solanacearum MolK2] Length = 165 Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 86/138 (62%), Positives = 104/138 (75%) Query: 3 TYTITELAEEFAITPRAIRFYEDHGILNPKREGVGGRHRVYPARERTRLKLTLRGKRLGF 62 ++TIT+LA EF ITPRAIRFYED G+L+P R+G GGR RVY ARERTRLKLTLRGKRLG Sbjct: 28 SFTITDLAREFDITPRAIRFYEDQGLLSPDRQGPGGRRRVYSARERTRLKLTLRGKRLGL 87 Query: 63 TLSEIKDLIDMYESPKDTQAQLQRFLGLLQQHREKLEQQREDLELTLSEIAAHEEECRQL 122 +L EIK+++D+YESP+DT QL+RFL L QHR L QQ EDL L+EI HE +CRQL Sbjct: 88 SLGEIKEILDLYESPRDTVPQLERFLASLAQHRAVLTQQLEDLNAQLAEIDQHEAQCRQL 147 Query: 123 LTDGKPRPLGSKPRRKAV 140 L + + + RRKA Sbjct: 148 LDEARGGGAKASKRRKAA 165 >ref|YP_003753744.1| MerR family transcriptional regulator [Ralstonia solanacearum PSI07] emb|CBJ52486.1| putative transcriptional regulator, MerR family [Ralstonia solanacearum PSI07] emb|CCA80422.1| putative transcriptional regulator, MerR family [blood disease bacterium R229] Length = 165 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 85/138 (61%), Positives = 104/138 (75%) Query: 3 TYTITELAEEFAITPRAIRFYEDHGILNPKREGVGGRHRVYPARERTRLKLTLRGKRLGF 62 ++TIT+LA EF ITPRAIRFYED G+L+P R+G GGR RVY ARERTRLKLTLRGKRLG Sbjct: 28 SFTITDLAREFDITPRAIRFYEDQGLLSPDRQGPGGRRRVYSARERTRLKLTLRGKRLGL 87 Query: 63 TLSEIKDLIDMYESPKDTQAQLQRFLGLLQQHREKLEQQREDLELTLSEIAAHEEECRQL 122 +L EIK+++D+YESP+DT QL+RFL L QHR L QQ EDL L+EI HE +CR+L Sbjct: 88 SLGEIKEILDLYESPRDTVPQLERFLASLAQHRAVLTQQLEDLNAQLAEIDQHEAQCRRL 147 Query: 123 LTDGKPRPLGSKPRRKAV 140 L + + + RRKA Sbjct: 148 LDEARSGAAKASKRRKAA 165 >gb|AEG70418.1| transcription regulator protein [Ralstonia solanacearum Po82] Length = 165 Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 86/138 (62%), Positives = 104/138 (75%) Query: 3 TYTITELAEEFAITPRAIRFYEDHGILNPKREGVGGRHRVYPARERTRLKLTLRGKRLGF 62 ++TIT+LA EF ITPRAIRFYED G+L+P R+G GGR RVY ARERTRLKLTLRGKRLG Sbjct: 28 SFTITDLAREFDITPRAIRFYEDQGLLSPDRQGPGGRRRVYSARERTRLKLTLRGKRLGL 87 Query: 63 TLSEIKDLIDMYESPKDTQAQLQRFLGLLQQHREKLEQQREDLELTLSEIAAHEEECRQL 122 +L EIK+++D+YESP+DT QL+RFL L QHR L QQ EDL L+EI HE +CRQL Sbjct: 88 SLGEIKEILDLYESPRDTVPQLERFLASLAQHRAVLTQQLEDLNAQLAEIDQHEAQCRQL 147 Query: 123 LTDGKPRPLGSKPRRKAV 140 L + + + RRKA Sbjct: 148 LDEARGGGAKAPKRRKAA 165 >ref|YP_004684006.1| MerR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI75525.1| transcriptional regulator MerR family [Cupriavidus necator N-1] Length = 154 Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 89/143 (62%), Positives = 106/143 (74%), Gaps = 5/143 (3%) Query: 4 YTITELAEEFAITPRAIRFYEDHGILNPKREGVGGRHRVYPARERTRLKLTLRGKRLGFT 63 +TIT+LA EF ITPRAIRFYED G+L+P+REG GGR RVY RERTRLKLTLRGKRLG T Sbjct: 12 FTITDLAREFDITPRAIRFYEDQGLLSPEREGPGGRKRVYNGRERTRLKLTLRGKRLGLT 71 Query: 64 LSEIKDLIDMYESPKDTQAQLQRFLGLLQQHREKLEQQREDLELTLSEIAAHEEECRQLL 123 L+EI++++D+YESP+DT QL+RFL L HR LEQQ EDL+ L+EI HE +CR LL Sbjct: 72 LNEIREILDLYESPRDTTPQLERFLHSLAAHRRTLEQQMEDLQAQLAEIDQHERQCRALL 131 Query: 124 T--DGKPRPL---GSKPRRKAVA 141 GKP+P G P R A Sbjct: 132 AAQTGKPQPATEGGDAPARTTAA 154 >emb|CCA88547.1| putative transcriptional regulator, MerR family [Ralstonia syzygii R24] Length = 165 Score = 171 bits (432), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 85/138 (61%), Positives = 104/138 (75%) Query: 3 TYTITELAEEFAITPRAIRFYEDHGILNPKREGVGGRHRVYPARERTRLKLTLRGKRLGF 62 ++TIT+LA EF ITPRAIRFYED G+L+P R+G GGR RVY ARERTRLKLTLRGKRLG Sbjct: 28 SFTITDLAREFDITPRAIRFYEDQGLLSPDRQGPGGRRRVYSARERTRLKLTLRGKRLGL 87 Query: 63 TLSEIKDLIDMYESPKDTQAQLQRFLGLLQQHREKLEQQREDLELTLSEIAAHEEECRQL 122 +L EIK+++D+YESP+DT QL+RFL L QHR L QQ EDL L+EI HE +CR+L Sbjct: 88 SLGEIKEILDLYESPRDTVPQLERFLASLAQHRAVLTQQLEDLNAQLAEIDQHEAQCRRL 147 Query: 123 LTDGKPRPLGSKPRRKAV 140 L + + + RRKA Sbjct: 148 LDEARSGAAKAPKRRKAA 165