BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0402.p (304 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778058.1| transmembrane protein [Herbaspirillum serope... 591 e-167 gb|AEG71564.1| conserved hypothetical protein [Ralstonia solanac... 290 2e-76 ref|YP_003750063.1| transmembrane protein [Ralstonia solanacearu... 288 5e-76 ref|NP_522631.1| putative transmembrane protein [Ralstonia solan... 286 3e-75 ref|YP_003748380.1| hypothetical protein RCFBP_mp20567 [Ralstoni... 286 4e-75 ref|YP_004355711.1| hypothetical protein PSEBR_a4298 [Pseudomona... 242 5e-62 ref|YP_003747806.1| hypothetical protein RCFBP_mp10610 [Ralstoni... 221 8e-56 emb|CBJ38048.1| conserved protein of unknown function [Ralstonia... 201 1e-49 emb|CCA87500.1| conserved hypothetical protein [Ralstonia syzygi... 200 2e-49 ref|NP_522628.1| hypothetical protein RS06033 [Ralstonia solanac... 154 2e-35 >ref|YP_003778058.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ66150.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 322 Score = 591 bits (1523), Expect = e-167, Method: Compositional matrix adjust. Identities = 282/300 (94%), Positives = 290/300 (96%) Query: 5 VIEQREQASMPTGDLTYRPQYAFTIVTNYLVLMLMHYSRGDSAEVVTQHLPDLISAWEEA 64 + +Q ++ P+G+ +YRPQYAFTIV+NYL LMLMHYSRGDSAEVVTQHLPDLISAWEEA Sbjct: 23 IADQLDRLGRPSGNPSYRPQYAFTIVSNYLELMLMHYSRGDSAEVVTQHLPDLISAWEEA 82 Query: 65 ERLHLEIMSSEDYWRKFNWSTNLDHYIVCFWITGLALCSPLGEDGWKRLIALMGNEGKDR 124 ERLHLEIMSSEDYWRKFNWSTNLDHYIVCFWITGLALCSPLGEDGWKRLIALMGNEGKDR Sbjct: 83 ERLHLEIMSSEDYWRKFNWSTNLDHYIVCFWITGLALCSPLGEDGWKRLIALMGNEGKDR 142 Query: 125 LLDTILASRQQNRVIGTTLCHPKPYQQLLDVVTCDPEQQAHALQRFVSIWYADLDRPPAN 184 LLDTILASRQQNRVIGTTLCHPKPYQQLLDVVTCDPEQQAHALQRFVS WYADLDRPPAN Sbjct: 143 LLDTILASRQQNRVIGTTLCHPKPYQQLLDVVTCDPEQQAHALQRFVSTWYADLDRPPAN 202 Query: 185 KKLSSDTALYNRPFWYKYGEHNRQGGAYFGQWCVEAVAVAKLFGIDDSLCVGHPLYPGDL 244 KKLSSDTALYNRPFWYKYGEHNRQGGAYFGQWCVEAVAVAKLFGIDDSLCVGHP YPGDL Sbjct: 203 KKLSSDTALYNRPFWYKYGEHNRQGGAYFGQWCVEAVAVAKLFGIDDSLCVGHPQYPGDL 262 Query: 245 LRPGVVTPPDLQRLPASLKKWPPDTPAEENASGSETDAAQKSSTTASRGWLARLFSRNRD 304 LRPGVVTPPDLQRLPASLKKWPPDTPAEENASGSE DAAQKSSTTASRGWLARLFSRNRD Sbjct: 263 LRPGVVTPPDLQRLPASLKKWPPDTPAEENASGSENDAAQKSSTTASRGWLARLFSRNRD 322 >gb|AEG71564.1| conserved hypothetical protein [Ralstonia solanacearum Po82] Length = 303 Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 143/300 (47%), Positives = 188/300 (62%), Gaps = 16/300 (5%) Query: 2 SGRVIEQREQASMPTGDLTYRPQYAFTIVTNYLVLMLMHYSRGDSAEVVTQHLPDLISAW 61 G + E +E + P GD Y PQ+AF I Y LML YSRGD + Q+ P ++ AW Sbjct: 20 KGAIQEFKETLNRPGGDERYAPQFAFQIAQKYWHLMLRMYSRGDDVRNLAQYFPPMLDAW 79 Query: 62 EEAERLHLEIMSSEDYWRKFNWSTNLDHYIVCFWITGLALCSPLGEDGWKRLIALMGNEG 121 EE++RL + + + + + W+ NLDHYIVCFW+ GLAL + +D W RL+ L+GNEG Sbjct: 80 EESKRLGQTVWTEQQQYTRHAWAVNLDHYIVCFWLVGLALAMDIPDDQWNRLLQLIGNEG 139 Query: 122 KDRLLDTILASRQQNRVIGTTLCHPKPYQQLLDVVTCDPEQQAHALQRFVSIWYADLDRP 181 +D LLD ++ASRQ R IGT LCHP+PY++LL+ V E+Q L +FV WY +LDR Sbjct: 140 EDALLDRVIASRQAGREIGTRLCHPQPYRRLLEAVNAPREKQGELLFKFVDNWYVELDR- 198 Query: 182 PANKKLSSDTALYNRPFWYKYGEHNRQGGAYFGQWCVEAVAVAKLFGIDDSLCVGHPLYP 241 PA K+LS TA+Y RP+W++YG+ N +GGAYFG+WCVEAVA K FGIDDSLC+GHP YP Sbjct: 199 PAKKELSEKTAMYERPYWHRYGDQNFEGGAYFGRWCVEAVAAVKAFGIDDSLCLGHPNYP 258 Query: 242 GDLLRPGVVTPPDLQRLPASLKKWPPDTPAEENASGSETDAAQKSSTTASRGWLARLFSR 301 GDLLRP P + P A+E A E + + GWL RLF + Sbjct: 259 GDLLRPDG---------PGT----HPLHSAQEGAGSGEI--GETGAVVKRSGWLGRLFGK 303 >ref|YP_003750063.1| transmembrane protein [Ralstonia solanacearum PSI07] emb|CBJ35440.1| putative transmembrane protein [Ralstonia solanacearum PSI07] Length = 304 Score = 288 bits (738), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 144/299 (48%), Positives = 185/299 (61%), Gaps = 16/299 (5%) Query: 4 RVIEQREQASMPTGDLTYRPQYAFTIVTNYLVLMLMHYSRGDSAEVVTQHLPDLISAWEE 63 R+ E +A + + YRPQY + I ML YSRGDS ++ + P L+ AWE+ Sbjct: 22 RIAEMISRAKESSRNPGYRPQYVYEITRENYEQMLRRYSRGDSVRELSHYFPALLDAWED 81 Query: 64 AERLHLEIMSSEDYWRKFNWSTNLDHYIVCFWITGLALCSPLGEDGWKRLIALMGNEGKD 123 AER ++ + E + + W NLDHY+VCFW+ GLAL + +D WKRL+AL+GNEG+D Sbjct: 82 AERFGRDVWTEEQQYTRHAWKVNLDHYVVCFWLVGLALALDIPDDQWKRLVALIGNEGED 141 Query: 124 RLLDTILASRQQNRVIGTTLCHPKPYQQLLDVVTCDPEQQAHALQRFVSIWYADLDRPPA 183 LLD I+ASRQ R IG LCHPKPYQ+LLD V +QA +L FV WYA LDR PA Sbjct: 142 VLLDRIIASRQAGRRIGGKLCHPKPYQRLLDAVNAPQAEQAKSLLVFVESWYAGLDR-PA 200 Query: 184 NKKLSSDTALYNRPFWYKYGEHNRQGGAYFGQWCVEAVAVAKLFGIDDSLCVGHPLYPGD 243 K LS TA+Y+RP+W++YG+ N +GGAYFG+WCVEAVA K FGID SLC+GHP YPGD Sbjct: 201 KKGLSEQTAMYDRPYWHRYGDQNFEGGAYFGRWCVEAVAAVKAFGIDGSLCLGHPNYPGD 260 Query: 244 LLRPGVVTPPDLQRLPASLKKWPPDTPAEENASGSETDAAQKSSTTASRGWLARLFSRN 302 LL P T P P E A E A + ++ GWL+RLF ++ Sbjct: 261 LLHPNGPTS-------------HPSHPMPEGAGSGE--AGETAAAMKRSGWLSRLFGKS 304 >ref|NP_522631.1| putative transmembrane protein [Ralstonia solanacearum GMI1000] emb|CAD18221.1| putative transmembrane protein [Ralstonia solanacearum GMI1000] Length = 305 Score = 286 bits (732), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 145/299 (48%), Positives = 181/299 (60%), Gaps = 16/299 (5%) Query: 4 RVIEQREQASMPTGDLTYRPQYAFTIVTNYLVLMLMHYSRGDSAEVVTQHLPDLISAWEE 63 R+ E +A P+ + YRPQY + I ML YSRGDS + + P LI AWE+ Sbjct: 23 RIAEMINRAKEPSRNPGYRPQYVYEIARENYEQMLRRYSRGDSVLELEHYFPALIDAWEK 82 Query: 64 AERLHLEIMSSEDYWRKFNWSTNLDHYIVCFWITGLALCSPLGEDGWKRLIALMGNEGKD 123 AE L ++ + E + + W NLDHY+VCFW+ GLAL + +D W RLIAL+GNEG+D Sbjct: 83 AEFLGKDVWTDEQQYSRHAWDVNLDHYVVCFWLVGLALAINIPDDQWGRLIALIGNEGED 142 Query: 124 RLLDTILASRQQNRVIGTTLCHPKPYQQLLDVVTCDPEQQAHALQRFVSIWYADLDRPPA 183 LLD I+ASRQ R IG LCHPKPYQ+LLD V +Q AL FV WY +LDRPP Sbjct: 143 VLLDRIIASRQSGRRIGEKLCHPKPYQRLLDAVNAPKTEQGKALFAFVEKWYVELDRPP- 201 Query: 184 NKKLSSDTALYNRPFWYKYGEHNRQGGAYFGQWCVEAVAVAKLFGIDDSLCVGHPLYPGD 243 K LS TA+Y+RP+W++YG+ N +GGAYFG+WCVEAVA K FGIDDSLC+GHP YPGD Sbjct: 202 KKGLSEQTAMYDRPYWHRYGDQNFEGGAYFGRWCVEAVAAVKAFGIDDSLCLGHPNYPGD 261 Query: 244 LLRPGVVTPPDLQRLPASLKKWPPDTPAEENASGSETDAAQKSSTTASRGWLARLFSRN 302 LL T P PA E E A + GWL+RLF ++ Sbjct: 262 LLHADAPTT-------------HPSRPAPEGIGSGE--AGGTADVVKRSGWLSRLFGKS 305 >ref|YP_003748380.1| hypothetical protein RCFBP_mp20567 [Ralstonia solanacearum CFBP2957] emb|CBJ53993.1| conserved protein of unknown function [Ralstonia solanacearum CFBP2957] Length = 304 Score = 286 bits (731), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 142/298 (47%), Positives = 184/298 (61%), Gaps = 16/298 (5%) Query: 4 RVIEQREQASMPTGDLTYRPQYAFTIVTNYLVLMLMHYSRGDSAEVVTQHLPDLISAWEE 63 R+ E +A P+ + +YRPQY + I ML YSRGDS + + P L+ WEE Sbjct: 23 RIAEMISRAKEPSRNPSYRPQYVYEITRESYEQMLRRYSRGDSVRELAHYFPTLLDTWEE 82 Query: 64 AERLHLEIMSSEDYWRKFNWSTNLDHYIVCFWITGLALCSPLGEDGWKRLIALMGNEGKD 123 AERL ++ + E + + W+ N DHY+VCFW+ GLAL + D WKRLI L+GNEG+D Sbjct: 83 AERLGKDVWTEEQQYTRHAWAVNFDHYVVCFWLVGLALALDIPNDQWKRLIDLVGNEGED 142 Query: 124 RLLDTILASRQQNRVIGTTLCHPKPYQQLLDVVTCDPEQQAHALQRFVSIWYADLDRPPA 183 LLD I+ASR+++R I LC+PKPYQ+LLD V + +L FV WYA+LDRPP Sbjct: 143 ILLDGIIASRKKDRKINAKLCYPKPYQRLLDAVNAPKAEHGKSLLVFVENWYAELDRPP- 201 Query: 184 NKKLSSDTALYNRPFWYKYGEHNRQGGAYFGQWCVEAVAVAKLFGIDDSLCVGHPLYPGD 243 K LS TA+Y+RP+W++YG+ N +GGAYFG+WCVEAVA K FGIDDSLC+GHP YPGD Sbjct: 202 KKGLSDQTAMYDRPYWHRYGDQNFEGGAYFGRWCVEAVAAVKAFGIDDSLCLGHPNYPGD 261 Query: 244 LLRPGVVTPPDLQRLPASLKKWPPDTPAEENASGSETDAAQKSSTTASRGWLARLFSR 301 LLRP P P A+E A E A+ + GWL RLF + Sbjct: 262 LLRP---DGPGTH----------PVHSAQEGAGSGEVGEAE--AAVKRSGWLGRLFGK 304 >ref|YP_004355711.1| hypothetical protein PSEBR_a4298 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA70707.1| Hypothetical protein PSEBR_a4298 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 299 Score = 242 bits (618), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 126/274 (45%), Positives = 160/274 (58%), Gaps = 8/274 (2%) Query: 5 VIEQREQASMPTGDLTYRPQYAFTIVTNYLVLMLMHYSRGDSAEVVTQHLPDLISAWEEA 64 ++E E A+ P GD Y PQY F I + ML YS G ++++ P L+ AWEEA Sbjct: 23 IVEALETAAKPAGDPDYAPQYVFIIAQKHWHQMLRRYSAGKPIADLSRYFPGLLDAWEEA 82 Query: 65 ERLHLEIMSSEDYWRKFNWSTNLDHYIVCFWITGLALCSPLGEDGWKRLIALMGNEGKDR 124 ERL + + E + + +W N DHYI CFW+ GL L + +D WKRL+AL+GNEG+D Sbjct: 83 ERLGATVWTQEQQFTRHSWRVNYDHYITCFWLVGLGLALDIPDDQWKRLLALIGNEGEDV 142 Query: 125 LLDTILASRQQNRVIGTTLCHPKPYQQLLDVVTCDPEQQAHALQRFVSIWYADLDRPPAN 184 LLD I+ASR R IG+ L +PKPY +LL V + QA L FV WYA++ R A Sbjct: 143 LLDRIIASRSPERKIGSVLLYPKPYARLLTAVDAPADSQASLLSAFVKHWYAEV-RTGAK 201 Query: 185 KKLSSDTALYNRPFWYKYGEHNRQGGAYFGQWCVEAVAVAKLFGIDDSLCVGHPLYPGDL 244 Y P+WY YG+ N +GGAYFG+WCVEAVA K FG+DDS C+G YPGDL Sbjct: 202 SGSDPQAVSYRHPYWYTYGDENFEGGAYFGRWCVEAVAAVKAFGMDDSQCLGLEHYPGDL 261 Query: 245 LRP-GVVTPPDLQRLPASLKKWPPDTPAEENASG 277 LRP G T P Q + PP A EN G Sbjct: 262 LRPNGPSTHPARQEVE------PPAAVAVENKGG 289 >ref|YP_003747806.1| hypothetical protein RCFBP_mp10610 [Ralstonia solanacearum CFBP2957] emb|CBJ53397.1| conserved protein of unknown function [Ralstonia solanacearum CFBP2957] Length = 301 Score = 221 bits (564), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 111/245 (45%), Positives = 156/245 (63%), Gaps = 12/245 (4%) Query: 10 EQASMPTGDLTYRPQYAFTIVTNYLVLMLMHYSRGDSAEVVTQHLPDLISAWEEAERLHL 69 E +P+G+L YRPQ+ + I ++ L+L YSRGD+ ++Q+ P L+ AWE + +L L Sbjct: 28 EHIKLPSGNLVYRPQFIWDISLEHVRLLLSRYSRGDAVRDLSQYFPGLLEAWELSNQLAL 87 Query: 70 EIMSSEDYWRKFNWS---TNLDHYIVCFWITGLALCSPLGEDGWKRLIALMGNEGKDRLL 126 EI + +W TNL+HY CF + GLAL + E W+RL+AL+G+EG+D LL Sbjct: 88 EICAEHGLKTCRDWDFSLTNLNHYTHCFGLVGLALALEIPEAQWQRLLALIGSEGEDTLL 147 Query: 127 DTILASRQQNRVIGTTLCHPKPYQQLLDVVTCDPEQQAHALQRFVSIWYADLDRP-PANK 185 D ++ASR+ R IG L HPKPY LL V+ +QA L FV WY +L RP P ++ Sbjct: 148 DRVIASREPQRSIGQALLHPKPYAHLLKVINAPSGEQAETLLDFVEHWYPELKRPAPKSR 207 Query: 186 KLSSDTALYNRPFWYKYGEHNR---QGGAYFGQWCVEAVAVAKLFGIDDSLCVGHPLYPG 242 K+ + +P+WY YG+ + + G+YFG+WCVEA+A K FG+DDSLC+GH YPG Sbjct: 208 KVPT-----IQPYWYDYGDPEKLPLEKGSYFGRWCVEAIAAVKAFGLDDSLCLGHEHYPG 262 Query: 243 DLLRP 247 DLLRP Sbjct: 263 DLLRP 267 >emb|CBJ38048.1| conserved protein of unknown function [Ralstonia solanacearum CMR15] Length = 301 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 104/253 (41%), Positives = 147/253 (58%), Gaps = 10/253 (3%) Query: 1 MSGRVIEQREQASMPTGDLTYRPQYAFTIVTNYLVLMLMHYSRGDSAEVVTQHLPDLISA 60 ++ + + + + P+G+ Y PQ+ F + + L L YSRGDS +++ ++ A Sbjct: 19 LTKAIATKWDMLAKPSGNPIYDPQFTFDLGKYCVTLTLRLYSRGDSIRTLSESFVGVLDA 78 Query: 61 WEEAERLHLEIMSSEDYWRKFNWS---TNLDHYIVCFWITGLALCSPLGEDGWKRLIALM 117 WE + RL +EI + +W TNL+HY CFW+ GLAL + + W+RL+ L+ Sbjct: 79 WELSNRLAVEICAEHGLETCRDWDFSLTNLNHYNYCFWLIGLALTLEISDAQWQRLLVLV 138 Query: 118 GNEGKDRLLDTILASRQQNRVIGTTLCHPKPYQQLLDVVTCDPEQQAHALQRFVSIWYAD 177 G EG+D LLD ++ASR+ R G L HP+PY +LL V P QQA AL FV+ WY + Sbjct: 139 GGEGEDVLLDRVIASREPQRSTGRVLLHPQPYARLLAAVDAAPGQQAGALLDFVTHWYPE 198 Query: 178 LDRPPANKKLSSDTALYNRPFWYKYGEHNRQGGA---YFGQWCVEAVAVAKLFGIDDSLC 234 L RP ++ + +PFWY YG A YFG+WC+EA A K FG+DDSLC Sbjct: 199 LKRPAPKERQTPRF----QPFWYHYGHPENNPLAMENYFGRWCIEAAAAVKAFGMDDSLC 254 Query: 235 VGHPLYPGDLLRP 247 +GH YPGDLLRP Sbjct: 255 LGHEHYPGDLLRP 267 >emb|CCA87500.1| conserved hypothetical protein [Ralstonia syzygii R24] Length = 299 Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 115/250 (46%), Positives = 157/250 (62%), Gaps = 12/250 (4%) Query: 5 VIEQREQASMPTGDLTYRPQYAFTIVTNYLVLMLMHYSRGDSAEVVTQHLPDLISAWEEA 64 V E E P+G+ YRPQ+ + + NYL L+L YSRGDS + Q+ L+ WE + Sbjct: 23 VEEDLEHIERPSGNPVYRPQFVWDMSKNYLRLLLRRYSRGDSIHELAQYFSGLLDTWELS 82 Query: 65 ERLHLEIMSSE--DYWRKFNWS-TNLDHYIVCFWITGLALCSPLGEDGWKRLIALMGNEG 121 R +I + D R +++S TNL+HY CF + GLAL + + WKRL+AL+G EG Sbjct: 83 NRSATKICAEHGLDTCRDWDFSLTNLNHYTYCFGLVGLALALEIPDVEWKRLLALVGGEG 142 Query: 122 KDRLLDTILASRQQNRVIGTTLCHPKPYQQLLDVVTCDPEQQAHALQRFVSIWYADLDRP 181 +D LLD ++ASR+ R IG L HPKPY +LL V P +QA AL FV+ WY +L RP Sbjct: 143 QDVLLDRVIASREPQRSIGQVLAHPKPYARLLKTVDAAPGRQAEALLDFVNHWYPELKRP 202 Query: 182 -PANKKLSSDTALYNRPFWYKYGEHNR---QGGAYFGQWCVEAVAVAKLFGIDDSLCVGH 237 P ++K A +P+WY YG+ + + G+YFG+WC+EAVA K FG+DD+LC+GH Sbjct: 203 APKSRK-----APTIQPYWYDYGDPEKFPLEKGSYFGRWCIEAVAAVKAFGLDDNLCLGH 257 Query: 238 PLYPGDLLRP 247 YPGDLLRP Sbjct: 258 EHYPGDLLRP 267 >ref|NP_522628.1| hypothetical protein RS06033 [Ralstonia solanacearum GMI1000] emb|CAD18218.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000] Length = 186 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 70/143 (48%), Positives = 98/143 (68%) Query: 37 MLMHYSRGDSAEVVTQHLPDLISAWEEAERLHLEIMSSEDYWRKFNWSTNLDHYIVCFWI 96 ML YSRGD+ +T++ P L+ AWE AERL + + + + + W+ NLDHYIVCFW+ Sbjct: 1 MLRRYSRGDAVSQITRYFPPLLDAWEGAERLGKSVWTEKQQYTRHAWAVNLDHYIVCFWL 60 Query: 97 TGLALCSPLGEDGWKRLIALMGNEGKDRLLDTILASRQQNRVIGTTLCHPKPYQQLLDVV 156 GLAL + +D W RL+ L+GNEG+D LLD ++ASRQ R IGT LC+P+PY++LL+ V Sbjct: 61 VGLALALDIPDDQWNRLLQLIGNEGEDELLDRVIASRQAGRQIGTRLCYPRPYRRLLEAV 120 Query: 157 TCDPEQQAHALQRFVSIWYADLD 179 ++QA L FV+ WY +LD Sbjct: 121 NAPRDEQAEPLFAFVNNWYVELD 143