BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0401.p (269 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778058.1| transmembrane protein [Herbaspirillum serope... 503 e-140 ref|YP_003750063.1| transmembrane protein [Ralstonia solanacearu... 268 7e-70 ref|YP_003748380.1| hypothetical protein RCFBP_mp20567 [Ralstoni... 261 1e-67 ref|NP_522631.1| putative transmembrane protein [Ralstonia solan... 260 1e-67 gb|AEG71564.1| conserved hypothetical protein [Ralstonia solanac... 259 4e-67 ref|YP_004355711.1| hypothetical protein PSEBR_a4298 [Pseudomona... 215 4e-54 ref|YP_003747806.1| hypothetical protein RCFBP_mp10610 [Ralstoni... 201 8e-50 emb|CBJ38048.1| conserved protein of unknown function [Ralstonia... 189 3e-46 emb|CCA87500.1| conserved hypothetical protein [Ralstonia syzygi... 183 2e-44 ref|NP_522628.1| hypothetical protein RS06033 [Ralstonia solanac... 153 3e-35 >ref|YP_003778058.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ66150.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 322 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 239/267 (89%), Positives = 247/267 (92%) Query: 1 MTLMRYSRGDSAEVVTQHLPDLISAWEEAERLHLEIMSSEDYWRKFNWSTNLDHYIVCFW 60 + LM YSRGDSAEVVTQHLPDLISAWEEAERLHLEIMSSEDYWRKFNWSTNLDHYIVCFW Sbjct: 54 LMLMHYSRGDSAEVVTQHLPDLISAWEEAERLHLEIMSSEDYWRKFNWSTNLDHYIVCFW 113 Query: 61 ITGLALCSPLGEDGWKRLIALMGNEGKDRLLDTILASRQQNRVIGTTLCHPKPYQQLLDV 120 ITGLALCSPLGEDGWKRLIALMGNEGKDRLLDTILASRQQNRVIGTTLCHPKPYQQLLDV Sbjct: 114 ITGLALCSPLGEDGWKRLIALMGNEGKDRLLDTILASRQQNRVIGTTLCHPKPYQQLLDV 173 Query: 121 VTCDPEQQAHALQRFVSIWYADLDRPPANKKLSSDTALYNRPFWYKYGEHNRQGGAYFGQ 180 VTCDPEQQAHALQRFVS WYADLDRPPANKKLSSDTALYNRPFWYKYGEHNRQGGAYFGQ Sbjct: 174 VTCDPEQQAHALQRFVSTWYADLDRPPANKKLSSDTALYNRPFWYKYGEHNRQGGAYFGQ 233 Query: 181 WCVEAVAVAKLFGIDDSLCVGHPLYPGDLLRPGVVTPPDLQRLPASLKKWPADVPASTDE 240 WCVEAVAVAKLFGIDDSLCVGHP YPGDLLRPGVVTPPDLQRLPASLKKWP D PA + Sbjct: 234 WCVEAVAVAKLFGIDDSLCVGHPQYPGDLLRPGVVTPPDLQRLPASLKKWPPDTPAEENA 293 Query: 241 TMLETSSDQERNTIAPRSWLTRLFFKD 267 + E + Q+ +T A R WL RLF ++ Sbjct: 294 SGSENDAAQKSSTTASRGWLARLFSRN 320 >ref|YP_003750063.1| transmembrane protein [Ralstonia solanacearum PSI07] emb|CBJ35440.1| putative transmembrane protein [Ralstonia solanacearum PSI07] Length = 304 Score = 268 bits (685), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 136/264 (51%), Positives = 172/264 (65%), Gaps = 16/264 (6%) Query: 3 LMRYSRGDSAEVVTQHLPDLISAWEEAERLHLEIMSSEDYWRKFNWSTNLDHYIVCFWIT 62 L RYSRGDS ++ + P L+ AWE+AER ++ + E + + W NLDHY+VCFW+ Sbjct: 56 LRRYSRGDSVRELSHYFPALLDAWEDAERFGRDVWTEEQQYTRHAWKVNLDHYVVCFWLV 115 Query: 63 GLALCSPLGEDGWKRLIALMGNEGKDRLLDTILASRQQNRVIGTTLCHPKPYQQLLDVVT 122 GLAL + +D WKRL+AL+GNEG+D LLD I+ASRQ R IG LCHPKPYQ+LLD V Sbjct: 116 GLALALDIPDDQWKRLVALIGNEGEDVLLDRIIASRQAGRRIGGKLCHPKPYQRLLDAVN 175 Query: 123 CDPEQQAHALQRFVSIWYADLDRPPANKKLSSDTALYNRPFWYKYGEHNRQGGAYFGQWC 182 +QA +L FV WYA LDR PA K LS TA+Y+RP+W++YG+ N +GGAYFG+WC Sbjct: 176 APQAEQAKSLLVFVESWYAGLDR-PAKKGLSEQTAMYDRPYWHRYGDQNFEGGAYFGRWC 234 Query: 183 VEAVAVAKLFGIDDSLCVGHPLYPGDLLRPGVVTPPDLQRLPASLKKWPADVPASTDETM 242 VEAVA K FGID SLC+GHP YPGDLL P P S P A + E Sbjct: 235 VEAVAAVKAFGIDGSLCLGHPNYPGDLLHPNG---------PTSHPSHPMPEGAGSGEAG 285 Query: 243 LETSSDQERNTIAPRSWLTRLFFK 266 ET++ +R+ WL+RLF K Sbjct: 286 -ETAAAMKRS-----GWLSRLFGK 303 >ref|YP_003748380.1| hypothetical protein RCFBP_mp20567 [Ralstonia solanacearum CFBP2957] emb|CBJ53993.1| conserved protein of unknown function [Ralstonia solanacearum CFBP2957] Length = 304 Score = 261 bits (666), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 130/265 (49%), Positives = 165/265 (62%), Gaps = 18/265 (6%) Query: 3 LMRYSRGDSAEVVTQHLPDLISAWEEAERLHLEIMSSEDYWRKFNWSTNLDHYIVCFWIT 62 L RYSRGDS + + P L+ WEEAERL ++ + E + + W+ N DHY+VCFW+ Sbjct: 57 LRRYSRGDSVRELAHYFPTLLDTWEEAERLGKDVWTEEQQYTRHAWAVNFDHYVVCFWLV 116 Query: 63 GLALCSPLGEDGWKRLIALMGNEGKDRLLDTILASRQQNRVIGTTLCHPKPYQQLLDVVT 122 GLAL + D WKRLI L+GNEG+D LLD I+ASR+++R I LC+PKPYQ+LLD V Sbjct: 117 GLALALDIPNDQWKRLIDLVGNEGEDILLDGIIASRKKDRKINAKLCYPKPYQRLLDAVN 176 Query: 123 CDPEQQAHALQRFVSIWYADLDRPPANKKLSSDTALYNRPFWYKYGEHNRQGGAYFGQWC 182 + +L FV WYA+LDRPP K LS TA+Y+RP+W++YG+ N +GGAYFG+WC Sbjct: 177 APKAEHGKSLLVFVENWYAELDRPP-KKGLSDQTAMYDRPYWHRYGDQNFEGGAYFGRWC 235 Query: 183 VEAVAVAKLFGIDDSLCVGHPLYPGDLLRPGVVTPPDLQRLPASLKKWPADVPASTDETM 242 VEAVA K FGIDDSLC+GHP YPGDLLRP P P + + Sbjct: 236 VEAVAAVKAFGIDDSLCLGHPNYPGDLLRP----------------DGPGTHPVHSAQEG 279 Query: 243 LETSSDQERNTIAPRS-WLTRLFFK 266 + E RS WL RLF K Sbjct: 280 AGSGEVGEAEAAVKRSGWLGRLFGK 304 >ref|NP_522631.1| putative transmembrane protein [Ralstonia solanacearum GMI1000] emb|CAD18221.1| putative transmembrane protein [Ralstonia solanacearum GMI1000] Length = 305 Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 132/264 (50%), Positives = 164/264 (62%), Gaps = 16/264 (6%) Query: 3 LMRYSRGDSAEVVTQHLPDLISAWEEAERLHLEIMSSEDYWRKFNWSTNLDHYIVCFWIT 62 L RYSRGDS + + P LI AWE+AE L ++ + E + + W NLDHY+VCFW+ Sbjct: 57 LRRYSRGDSVLELEHYFPALIDAWEKAEFLGKDVWTDEQQYSRHAWDVNLDHYVVCFWLV 116 Query: 63 GLALCSPLGEDGWKRLIALMGNEGKDRLLDTILASRQQNRVIGTTLCHPKPYQQLLDVVT 122 GLAL + +D W RLIAL+GNEG+D LLD I+ASRQ R IG LCHPKPYQ+LLD V Sbjct: 117 GLALAINIPDDQWGRLIALIGNEGEDVLLDRIIASRQSGRRIGEKLCHPKPYQRLLDAVN 176 Query: 123 CDPEQQAHALQRFVSIWYADLDRPPANKKLSSDTALYNRPFWYKYGEHNRQGGAYFGQWC 182 +Q AL FV WY +LDRPP K LS TA+Y+RP+W++YG+ N +GGAYFG+WC Sbjct: 177 APKTEQGKALFAFVEKWYVELDRPP-KKGLSEQTAMYDRPYWHRYGDQNFEGGAYFGRWC 235 Query: 183 VEAVAVAKLFGIDDSLCVGHPLYPGDLLRPGVVTPPDLQRLPASLKKWPADVPASTDETM 242 VEAVA K FGIDDSLC+GHP YPGDLL T + P + A A Sbjct: 236 VEAVAAVKAFGIDDSLCLGHPNYPGDLLHADAPTTHPSRPAPEGIGSGEAGGTA------ 289 Query: 243 LETSSDQERNTIAPRSWLTRLFFK 266 + + WL+RLF K Sbjct: 290 ---------DVVKRSGWLSRLFGK 304 >gb|AEG71564.1| conserved hypothetical protein [Ralstonia solanacearum Po82] Length = 303 Score = 259 bits (661), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 127/267 (47%), Positives = 168/267 (62%), Gaps = 18/267 (6%) Query: 1 MTLMRYSRGDSAEVVTQHLPDLISAWEEAERLHLEIMSSEDYWRKFNWSTNLDHYIVCFW 60 + L YSRGD + Q+ P ++ AWEE++RL + + + + + W+ NLDHYIVCFW Sbjct: 54 LMLRMYSRGDDVRNLAQYFPPMLDAWEESKRLGQTVWTEQQQYTRHAWAVNLDHYIVCFW 113 Query: 61 ITGLALCSPLGEDGWKRLIALMGNEGKDRLLDTILASRQQNRVIGTTLCHPKPYQQLLDV 120 + GLAL + +D W RL+ L+GNEG+D LLD ++ASRQ R IGT LCHP+PY++LL+ Sbjct: 114 LVGLALAMDIPDDQWNRLLQLIGNEGEDALLDRVIASRQAGREIGTRLCHPQPYRRLLEA 173 Query: 121 VTCDPEQQAHALQRFVSIWYADLDRPPANKKLSSDTALYNRPFWYKYGEHNRQGGAYFGQ 180 V E+Q L +FV WY +LDR PA K+LS TA+Y RP+W++YG+ N +GGAYFG+ Sbjct: 174 VNAPREKQGELLFKFVDNWYVELDR-PAKKELSEKTAMYERPYWHRYGDQNFEGGAYFGR 232 Query: 181 WCVEAVAVAKLFGIDDSLCVGHPLYPGDLLRPGVVTPPDLQRLPASLKKWPADVPASTDE 240 WCVEAVA K FGIDDSLC+GHP YPGDLLRP P P + + Sbjct: 233 WCVEAVAAVKAFGIDDSLCLGHPNYPGDLLRP----------------DGPGTHPLHSAQ 276 Query: 241 TMLETSSDQERNTIAPRS-WLTRLFFK 266 + E + RS WL RLF K Sbjct: 277 EGAGSGEIGETGAVVKRSGWLGRLFGK 303 >ref|YP_004355711.1| hypothetical protein PSEBR_a4298 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA70707.1| Hypothetical protein PSEBR_a4298 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 299 Score = 215 bits (548), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 110/228 (48%), Positives = 142/228 (62%), Gaps = 4/228 (1%) Query: 3 LMRYSRGDSAEVVTQHLPDLISAWEEAERLHLEIMSSEDYWRKFNWSTNLDHYIVCFWIT 62 L RYS G ++++ P L+ AWEEAERL + + E + + +W N DHYI CFW+ Sbjct: 56 LRRYSAGKPIADLSRYFPGLLDAWEEAERLGATVWTQEQQFTRHSWRVNYDHYITCFWLV 115 Query: 63 GLALCSPLGEDGWKRLIALMGNEGKDRLLDTILASRQQNRVIGTTLCHPKPYQQLLDVVT 122 GL L + +D WKRL+AL+GNEG+D LLD I+ASR R IG+ L +PKPY +LL V Sbjct: 116 GLGLALDIPDDQWKRLLALIGNEGEDVLLDRIIASRSPERKIGSVLLYPKPYARLLTAVD 175 Query: 123 CDPEQQAHALQRFVSIWYADLDRPPANKKLSSDTALYNRPFWYKYGEHNRQGGAYFGQWC 182 + QA L FV WYA++ R A Y P+WY YG+ N +GGAYFG+WC Sbjct: 176 APADSQASLLSAFVKHWYAEV-RTGAKSGSDPQAVSYRHPYWYTYGDENFEGGAYFGRWC 234 Query: 183 VEAVAVAKLFGIDDSLCVGHPLYPGDLLRP-GVVTPPDLQRL--PASL 227 VEAVA K FG+DDS C+G YPGDLLRP G T P Q + PA++ Sbjct: 235 VEAVAAVKAFGMDDSQCLGLEHYPGDLLRPNGPSTHPARQEVEPPAAV 282 >ref|YP_003747806.1| hypothetical protein RCFBP_mp10610 [Ralstonia solanacearum CFBP2957] emb|CBJ53397.1| conserved protein of unknown function [Ralstonia solanacearum CFBP2957] Length = 301 Score = 201 bits (512), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 109/250 (43%), Positives = 155/250 (62%), Gaps = 22/250 (8%) Query: 1 MTLMRYSRGDSAEVVTQHLPDLISAWEEAERLHLEIMSSEDYWRKFNWS---TNLDHYIV 57 + L RYSRGD+ ++Q+ P L+ AWE + +L LEI + +W TNL+HY Sbjct: 54 LLLSRYSRGDAVRDLSQYFPGLLEAWELSNQLALEICAEHGLKTCRDWDFSLTNLNHYTH 113 Query: 58 CFWITGLALCSPLGEDGWKRLIALMGNEGKDRLLDTILASRQQNRVIGTTLCHPKPYQQL 117 CF + GLAL + E W+RL+AL+G+EG+D LLD ++ASR+ R IG L HPKPY L Sbjct: 114 CFGLVGLALALEIPEAQWQRLLALIGSEGEDTLLDRVIASREPQRSIGQALLHPKPYAHL 173 Query: 118 LDVVTCDPEQQAHALQRFVSIWYADLDRP-PANKKLSSDTALYNRPFWYKYGEHNR---Q 173 L V+ +QA L FV WY +L RP P ++K+ + +P+WY YG+ + + Sbjct: 174 LKVINAPSGEQAETLLDFVEHWYPELKRPAPKSRKVPT-----IQPYWYDYGDPEKLPLE 228 Query: 174 GGAYFGQWCVEAVAVAKLFGIDDSLCVGHPLYPGDLLRPGVVTPPDLQRLPASLKKWPAD 233 G+YFG+WCVEA+A K FG+DDSLC+GH YPGDLLRP P++ K+ P D Sbjct: 229 KGSYFGRWCVEAIAAVKAFGLDDSLCLGHEHYPGDLLRPDG---------PSTHKRRP-D 278 Query: 234 VPASTDETML 243 V +++ E++L Sbjct: 279 VDSASGESVL 288 >emb|CBJ38048.1| conserved protein of unknown function [Ralstonia solanacearum CMR15] Length = 301 Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 98/218 (44%), Positives = 131/218 (60%), Gaps = 10/218 (4%) Query: 1 MTLMRYSRGDSAEVVTQHLPDLISAWEEAERLHLEIMSSEDYWRKFNWS---TNLDHYIV 57 +TL YSRGDS +++ ++ AWE + RL +EI + +W TNL+HY Sbjct: 54 LTLRLYSRGDSIRTLSESFVGVLDAWELSNRLAVEICAEHGLETCRDWDFSLTNLNHYNY 113 Query: 58 CFWITGLALCSPLGEDGWKRLIALMGNEGKDRLLDTILASRQQNRVIGTTLCHPKPYQQL 117 CFW+ GLAL + + W+RL+ L+G EG+D LLD ++ASR+ R G L HP+PY +L Sbjct: 114 CFWLIGLALTLEISDAQWQRLLVLVGGEGEDVLLDRVIASREPQRSTGRVLLHPQPYARL 173 Query: 118 LDVVTCDPEQQAHALQRFVSIWYADLDRPPANKKLSSDTALYNRPFWYKYGEHNRQGGA- 176 L V P QQA AL FV+ WY +L RP ++ + +PFWY YG A Sbjct: 174 LAAVDAAPGQQAGALLDFVTHWYPELKRPAPKERQTPRF----QPFWYHYGHPENNPLAM 229 Query: 177 --YFGQWCVEAVAVAKLFGIDDSLCVGHPLYPGDLLRP 212 YFG+WC+EA A K FG+DDSLC+GH YPGDLLRP Sbjct: 230 ENYFGRWCIEAAAAVKAFGMDDSLCLGHEHYPGDLLRP 267 >emb|CCA87500.1| conserved hypothetical protein [Ralstonia syzygii R24] Length = 299 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 98/211 (46%), Positives = 134/211 (63%), Gaps = 12/211 (5%) Query: 9 GDSAEVVTQHLPDLISAWEEAERLHLEIMSSE--DYWRKFNWS-TNLDHYIVCFWITGLA 65 GDS + Q+ L+ WE + R +I + D R +++S TNL+HY CF + GLA Sbjct: 62 GDSIHELAQYFSGLLDTWELSNRSATKICAEHGLDTCRDWDFSLTNLNHYTYCFGLVGLA 121 Query: 66 LCSPLGEDGWKRLIALMGNEGKDRLLDTILASRQQNRVIGTTLCHPKPYQQLLDVVTCDP 125 L + + WKRL+AL+G EG+D LLD ++ASR+ R IG L HPKPY +LL V P Sbjct: 122 LALEIPDVEWKRLLALVGGEGQDVLLDRVIASREPQRSIGQVLAHPKPYARLLKTVDAAP 181 Query: 126 EQQAHALQRFVSIWYADLDRP-PANKKLSSDTALYNRPFWYKYGEHNR---QGGAYFGQW 181 +QA AL FV+ WY +L RP P ++K A +P+WY YG+ + + G+YFG+W Sbjct: 182 GRQAEALLDFVNHWYPELKRPAPKSRK-----APTIQPYWYDYGDPEKFPLEKGSYFGRW 236 Query: 182 CVEAVAVAKLFGIDDSLCVGHPLYPGDLLRP 212 C+EAVA K FG+DD+LC+GH YPGDLLRP Sbjct: 237 CIEAVAAVKAFGLDDNLCLGHEHYPGDLLRP 267 >ref|NP_522628.1| hypothetical protein RS06033 [Ralstonia solanacearum GMI1000] emb|CAD18218.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000] Length = 186 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 70/142 (49%), Positives = 98/142 (69%) Query: 3 LMRYSRGDSAEVVTQHLPDLISAWEEAERLHLEIMSSEDYWRKFNWSTNLDHYIVCFWIT 62 L RYSRGD+ +T++ P L+ AWE AERL + + + + + W+ NLDHYIVCFW+ Sbjct: 2 LRRYSRGDAVSQITRYFPPLLDAWEGAERLGKSVWTEKQQYTRHAWAVNLDHYIVCFWLV 61 Query: 63 GLALCSPLGEDGWKRLIALMGNEGKDRLLDTILASRQQNRVIGTTLCHPKPYQQLLDVVT 122 GLAL + +D W RL+ L+GNEG+D LLD ++ASRQ R IGT LC+P+PY++LL+ V Sbjct: 62 GLALALDIPDDQWNRLLQLIGNEGEDELLDRVIASRQAGRQIGTRLCYPRPYRRLLEAVN 121 Query: 123 CDPEQQAHALQRFVSIWYADLD 144 ++QA L FV+ WY +LD Sbjct: 122 APRDEQAEPLFAFVNNWYVELD 143