BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0400.p (141 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778057.1| hypothetical protein Hsero_4683 [Herbaspiril... 295 2e-78 emb|CCA88260.1| conserved hypothetical protein [Ralstonia syzygi... 155 1e-36 emb|CCA88264.1| conserved hypothetical protein [Ralstonia syzygi... 153 6e-36 emb|CBJ40750.1| hypothethical protein [Ralstonia solanacearum CM... 150 9e-35 emb|CBJ40752.1| hypothethical protein [Ralstonia solanacearum CM... 130 7e-29 ref|YP_003040385.1| hypothetical protein PAU_01549 [Photorhabdus... 89 3e-16 ref|NP_930292.1| hypothetical protein plu3060 [Photorhabdus lumi... 86 2e-15 ref|NP_930291.1| hypothetical protein plu3059 [Photorhabdus lumi... 84 1e-14 gb|EGT74358.1| Hypothetical protein GGA_1736 [Haemophilus haemol... 79 3e-13 ref|YP_071941.1| hypothetical protein YPTB3455 [Yersinia pseudot... 78 4e-13 >ref|YP_003778057.1| hypothetical protein Hsero_4683 [Herbaspirillum seropedicae SmR1] gb|ADJ66149.1| hypothetical protein Hsero_4683 [Herbaspirillum seropedicae SmR1] Length = 165 Score = 295 bits (755), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 140/141 (99%), Positives = 141/141 (100%) Query: 1 MLDFADPDVSPQILMPTTTDAELGGALRLALSKSRQVTVPEFQEILKSGIVQKNAKERQA 60 MLDFADPD+SPQILMPTTTDAELGGALRLALSKSRQVTVPEFQEILKSGIVQKNAKERQA Sbjct: 25 MLDFADPDLSPQILMPTTTDAELGGALRLALSKSRQVTVPEFQEILKSGIVQKNAKERQA 84 Query: 61 LIMQRHGYKNRKAMMRKMACCWITADKAKIEIKPTHHKNIDGYSGISNDGPEIIFISTNS 120 LIMQRHGYKNRKAMMRKMACCWITADKAKIEIKPTHHKNIDGYSGISNDGPEIIFISTNS Sbjct: 85 LIMQRHGYKNRKAMMRKMACCWITADKAKIEIKPTHHKNIDGYSGISNDGPEIIFISTNS 144 Query: 121 GDAELGAALKEGFSRCTSAVP 141 GDAELGAALKEGFSRCTSAVP Sbjct: 145 GDAELGAALKEGFSRCTSAVP 165 >emb|CCA88260.1| conserved hypothetical protein [Ralstonia syzygii R24] Length = 165 Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 70/140 (50%), Positives = 93/140 (66%) Query: 1 MLDFADPDVSPQILMPTTTDAELGGALRLALSKSRQVTVPEFQEILKSGIVQKNAKERQA 60 +LD+ DPDV+P L DAELG ALR AL +S+ V+ +FQ + KSG++Q +ER Sbjct: 26 ILDYVDPDVAPHYLESGVNDAELGEALRSALRESKCVSAEDFQNLFKSGVIQNAERERVE 85 Query: 61 LIMQRHGYKNRKAMMRKMACCWITADKAKIEIKPTHHKNIDGYSGISNDGPEIIFISTNS 120 M R+GYK ++AM + M CCWI +EIKPT HK++D Y+G+SN GP II + Sbjct: 86 WAMARYGYKTKRAMYKDMRCCWIKFQGGVVEIKPTFHKSMDCYTGLSNGGPGIIHVRDAV 145 Query: 121 GDAELGAALKEGFSRCTSAV 140 DAELGAAL+EGF RC A+ Sbjct: 146 SDAELGAALREGFGRCAGAI 165 >emb|CCA88264.1| conserved hypothetical protein [Ralstonia syzygii R24] Length = 166 Score = 153 bits (387), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 73/140 (52%), Positives = 98/140 (70%) Query: 1 MLDFADPDVSPQILMPTTTDAELGGALRLALSKSRQVTVPEFQEILKSGIVQKNAKERQA 60 ML +A+P VSP L P DA LG ALR AL+KS++V V +FQEI SGIVQK AKER A Sbjct: 26 MLSYAEPSVSPCYLPPEVDDASLGKALREALAKSQRVEVEKFQEIFHSGIVQKIAKERDA 85 Query: 61 LIMQRHGYKNRKAMMRKMACCWITADKAKIEIKPTHHKNIDGYSGISNDGPEIIFISTNS 120 L+M+ +GYK ++AM +KM C + +IE++P H K++DGY+ + GP + + + Sbjct: 86 LVMKSYGYKTKRAMFQKMDSCSVAVFDDQIEVQPLHQKSLDGYAARKDTGPFPLHVPATA 145 Query: 121 GDAELGAALKEGFSRCTSAV 140 DAELGAAL+EGF RCTSA+ Sbjct: 146 TDAELGAALREGFKRCTSAI 165 >emb|CBJ40750.1| hypothethical protein [Ralstonia solanacearum CMR15] Length = 166 Score = 150 bits (378), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 69/140 (49%), Positives = 100/140 (71%) Query: 1 MLDFADPDVSPQILMPTTTDAELGGALRLALSKSRQVTVPEFQEILKSGIVQKNAKERQA 60 M+ +A+P P L P D LG ALR AL+KS QV+V +FQEI +SG+VQK KER+A Sbjct: 26 MMSYAEPGAEPSYLDPHVDDDLLGRALREALAKSCQVSVEDFQEIFQSGVVQKLGKEREA 85 Query: 61 LIMQRHGYKNRKAMMRKMACCWITADKAKIEIKPTHHKNIDGYSGISNDGPEIIFISTNS 120 L M+++GYK R+AM++KM C ++ +IEI+PTH K++DG++ ++GP +++ + Sbjct: 86 LAMEKYGYKTRRAMLKKMDTCSVSVVDNQIEIQPTHQKSLDGWTVTKDEGPFPLYVPGTA 145 Query: 121 GDAELGAALKEGFSRCTSAV 140 D ELGAAL+EGF RCTSA+ Sbjct: 146 TDIELGAALREGFKRCTSAI 165 >emb|CBJ40752.1| hypothethical protein [Ralstonia solanacearum CMR15] Length = 166 Score = 130 bits (327), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 59/140 (42%), Positives = 90/140 (64%) Query: 1 MLDFADPDVSPQILMPTTTDAELGGALRLALSKSRQVTVPEFQEILKSGIVQKNAKERQA 60 M+ + +P P L P DA LG ALR AL+ S+ V+V EFQ I SG+++ ER Sbjct: 26 MMAYPEPSAPPHYLSPDVDDAALGNALRSALASSKHVSVEEFQGIWNSGVIENIESERDD 85 Query: 61 LIMQRHGYKNRKAMMRKMACCWITADKAKIEIKPTHHKNIDGYSGISNDGPEIIFISTNS 120 I +++GYK ++AM + M C ++ +++I+PTH K +DGY+ ++GP +++ + Sbjct: 86 WIKKQYGYKTKRAMYKNMDTCNVSGIDDQVKIQPTHQKTLDGYTVRKDEGPFPLYVPGAA 145 Query: 121 GDAELGAALKEGFSRCTSAV 140 DAELGAAL+EGF RCTSA+ Sbjct: 146 TDAELGAALREGFKRCTSAI 165 >ref|YP_003040385.1| hypothetical protein PAU_01549 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] emb|CAR66761.1| conserved hypothetical protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] emb|CAQ83641.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 168 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 45/136 (33%), Positives = 76/136 (55%) Query: 5 ADPDVSPQILMPTTTDAELGGALRLALSKSRQVTVPEFQEILKSGIVQKNAKERQALIMQ 64 ADP S +L P +D ELG ++ ALSKSR++++ E+ + + + K +M+ Sbjct: 33 ADPLGSKHLLQPIVSDQELGTSVLDALSKSRRISLDEYGDYFDHDVSNEQYKNWITEMME 92 Query: 65 RHGYKNRKAMMRKMACCWITADKAKIEIKPTHHKNIDGYSGISNDGPEIIFISTNSGDAE 124 +GY++++ + +KM C I +I I+P+ H +D +SG + + I +S E Sbjct: 93 SYGYRSKRQLFKKMLSCSICMLDGEITIQPSSHVKLDSWSGDGISETDNVVIPADSSPEE 152 Query: 125 LGAALKEGFSRCTSAV 140 +GAAL+ FSRC S V Sbjct: 153 VGAALRLAFSRCRSYV 168 >ref|NP_930292.1| hypothetical protein plu3060 [Photorhabdus luminescens subsp. laumondii TTO1] emb|CAE15434.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 168 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 74/136 (54%) Query: 5 ADPDVSPQILMPTTTDAELGGALRLALSKSRQVTVPEFQEILKSGIVQKNAKERQALIMQ 64 ADP S +L P +D ELG A ALSKSR + + E ++ + K +M+ Sbjct: 33 ADPLGSKHLLQPIVSDQELGKAALDALSKSRVIPLDECEDYFDHDASDEQYKNWITEMMK 92 Query: 65 RHGYKNRKAMMRKMACCWITADKAKIEIKPTHHKNIDGYSGISNDGPEIIFISTNSGDAE 124 +GY++++ + +KM C I +I I+P+ H+ ++G+SG + + I +S E Sbjct: 93 SYGYRSKRRLFKKMLSCSICMLDGEITIQPSSHEKLEGWSGDGISEADYVVIPADSSPEE 152 Query: 125 LGAALKEGFSRCTSAV 140 +GAAL+ FSRC S V Sbjct: 153 VGAALRLAFSRCRSYV 168 >ref|NP_930291.1| hypothetical protein plu3059 [Photorhabdus luminescens subsp. laumondii TTO1] emb|CAE15433.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 168 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 4/138 (2%) Query: 5 ADPDVSPQILMPTTTDAELGGALRLALSKSRQVTVPEFQEILKSGIVQKNAKERQALIMQ 64 ADP S +L P +D ELG A+ ALSKSR + + ++ + + + K +M Sbjct: 33 ADPSGSNYLLQPIVSDQELGKAVLDALSKSRVIPLDKYGDYFDHDVNAEQYKNWITEMMG 92 Query: 65 RHGYKNRKAMMRKMACCWITADKAKIEIKPTHHKNIDGYS--GISNDGPEIIFISTNSGD 122 + Y++++ + +KM C I +I I+P+ H+ ++G+S GIS + + I +S Sbjct: 93 SYNYRSKRQLFKKMLSCGICMLDGQITIRPSCHEKLEGWSEDGISE--ADYVIIPADSSP 150 Query: 123 AELGAALKEGFSRCTSAV 140 AE+GAAL+ FSRC S V Sbjct: 151 AEVGAALRLAFSRCRSYV 168 >gb|EGT74358.1| Hypothetical protein GGA_1736 [Haemophilus haemolyticus M21127] Length = 167 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 75/140 (53%), Gaps = 2/140 (1%) Query: 1 MLDFADPDVSPQILMPTTTDAELGGALRLALSKSRQVTVPEFQEILKSGIVQKNAKERQA 60 M+ DPD +D +LG ++ L++S++++ EFQ I S ++ K + Sbjct: 25 MIAMTDPDQDFIFNEVDISDLDLGKLIKEKLNESKEISFEEFQAIFNSEKMKGLQKNLEE 84 Query: 61 LIMQRHGYKNRKAMMRKMACCWITADKAKIEIKPTHHKNIDGYSGIS--NDGPEIIFIST 118 + +R+GYKN+K++ + M+ + D + I I P H ++ GYSGIS ++ P Sbjct: 85 EMKKRYGYKNKKSIYKDMSFLSLEQDASFIIIAPLHQDSLGGYSGISLPDNSPLEFKYDK 144 Query: 119 NSGDAELGAALKEGFSRCTS 138 N D ELG A+++ + CTS Sbjct: 145 NISDEELGKAIRQALTYCTS 164 >ref|YP_071941.1| hypothetical protein YPTB3455 [Yersinia pseudotuberculosis IP 32953] ref|YP_001874048.1| hypothetical protein YPTS_3638 [Yersinia pseudotuberculosis PB1/+] emb|CAH22693.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gb|ACC90591.1| protein of unknown function DUF1436 [Yersinia pseudotuberculosis PB1/+] Length = 166 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 67/132 (50%) Query: 5 ADPDVSPQILMPTTTDAELGGALRLALSKSRQVTVPEFQEILKSGIVQKNAKERQALIMQ 64 AD P +L P + +G + ALS SR +TV E + ++ A++M+ Sbjct: 33 ADNLFPPHLLPPDIDNQSIGETILQALSDSRTLTVKECETFFDFEKGKEEYAAWVAMLME 92 Query: 65 RHGYKNRKAMMRKMACCWITADKAKIEIKPTHHKNIDGYSGISNDGPEIIFISTNSGDAE 124 ++GYK +K++ + M C I I I PT H+ ++G+ DG E + +S +S E Sbjct: 93 KYGYKTKKSLFKNMKNCGIHCFNGVITISPTRHEKLEGWGREKGDGIEDVILSVDSSPTE 152 Query: 125 LGAALKEGFSRC 136 +GA L+ SRC Sbjct: 153 IGAGLRLALSRC 164