BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0397.p (172 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778054.1| polypeptide deformylase [Herbaspirillum sero... 350 6e-95 ref|YP_004754753.1| peptide deformylase [Collimonas fungivorans ... 298 2e-79 ref|YP_001351833.1| polypeptide deformylase [Janthinobacterium s... 285 1e-75 ref|ZP_08275972.1| Peptide deformylase [Oxalobacteraceae bacteri... 279 1e-73 ref|YP_001098483.1| peptide deformylase [Herminiimonas arsenicox... 278 3e-73 ref|ZP_00945651.1| Peptide deformylase [Ralstonia solanacearum U... 260 5e-68 ref|YP_002258341.1| peptide deformylase 1 (pdf 1) (polypeptide d... 260 5e-68 ref|YP_002983292.1| peptide deformylase [Ralstonia pickettii 12D... 260 5e-68 emb|CAQ56407.1| peptide deformylase 1 (pdf 1) (polypeptide defor... 260 5e-68 ref|YP_001028237.1| peptide deformylase [Burkholderia mallei NCT... 259 8e-68 >ref|YP_003778054.1| polypeptide deformylase [Herbaspirillum seropedicae SmR1] gb|ADJ66146.1| polypeptide deformylase protein [Herbaspirillum seropedicae SmR1] Length = 172 Score = 350 bits (897), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 172/172 (100%), Positives = 172/172 (100%) Query: 1 MALLNILRYPDPRLHKIAAPVTVFDERIKKLVADMAETMYAAPGVGLAATQVDVHEQVVV 60 MALLNILRYPDPRLHKIAAPVTVFDERIKKLVADMAETMYAAPGVGLAATQVDVHEQVVV Sbjct: 1 MALLNILRYPDPRLHKIAAPVTVFDERIKKLVADMAETMYAAPGVGLAATQVDVHEQVVV 60 Query: 61 IDVSDDGKNLQVFINPEIVWASEDKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120 IDVSDDGKNLQVFINPEIVWASEDKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF Sbjct: 61 IDVSDDGKNLQVFINPEIVWASEDKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120 Query: 121 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEERELKKKAG 172 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEERELKKKAG Sbjct: 121 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEERELKKKAG 172 >ref|YP_004754753.1| peptide deformylase [Collimonas fungivorans Ter331] gb|AEK63930.1| Peptide deformylase [Collimonas fungivorans Ter331] Length = 176 Score = 298 bits (764), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 141/169 (83%), Positives = 156/169 (92%) Query: 1 MALLNILRYPDPRLHKIAAPVTVFDERIKKLVADMAETMYAAPGVGLAATQVDVHEQVVV 60 M+LLNILRYPD RLHKIA PVTVFD R+KKL+ADMAETMY APGVGLAA+QVDVHEQ+VV Sbjct: 1 MSLLNILRYPDVRLHKIAKPVTVFDTRLKKLIADMAETMYEAPGVGLAASQVDVHEQLVV 60 Query: 61 IDVSDDGKNLQVFINPEIVWASEDKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120 ID SD G +L+VFINPEI+WASE+K++YDEGCLSVPG+YDGVERPAR+KVRA DADGK F Sbjct: 61 IDTSDTGTDLRVFINPEILWASEEKQIYDEGCLSVPGVYDGVERPARIKVRALDADGKPF 120 Query: 121 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEERELKK 169 EVDAD LLAVCIQHEMDHL GKVFVEYLSPLKRNRIK K+ KEERELK+ Sbjct: 121 EVDADGLLAVCIQHEMDHLMGKVFVEYLSPLKRNRIKAKMLKEERELKR 169 >ref|YP_001351833.1| polypeptide deformylase [Janthinobacterium sp. Marseille] gb|ABR89795.1| polypeptide deformylase [Janthinobacterium sp. Marseille] Length = 178 Score = 285 bits (730), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 134/169 (79%), Positives = 152/169 (89%) Query: 1 MALLNILRYPDPRLHKIAAPVTVFDERIKKLVADMAETMYAAPGVGLAATQVDVHEQVVV 60 M++LNILRYPDPRLHK+A PV+VFDERIK LVADMAETMY APGVGLAA+QVDVHEQV+V Sbjct: 1 MSILNILRYPDPRLHKVAKPVSVFDERIKTLVADMAETMYDAPGVGLAASQVDVHEQVIV 60 Query: 61 IDVSDDGKNLQVFINPEIVWASEDKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120 ID S+ L+ +INPEI+WAS + +VYDEGCLSVPG+YDGVER A+VKVRAFDADGK F Sbjct: 61 IDTSETHTELRAYINPEIIWASPEMQVYDEGCLSVPGVYDGVERHAKVKVRAFDADGKQF 120 Query: 121 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEERELKK 169 E++AD LLAVCIQHEMDHLKGKVFVEYLSPLKRNRIK K+ KEEREL + Sbjct: 121 ELEADGLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKAKMLKEERELAR 169 >ref|ZP_08275972.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480] gb|EGF30553.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480] Length = 177 Score = 279 bits (713), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 129/169 (76%), Positives = 149/169 (88%) Query: 1 MALLNILRYPDPRLHKIAAPVTVFDERIKKLVADMAETMYAAPGVGLAATQVDVHEQVVV 60 M LLNILRYPDPRLHKIA PVTVFD+R+K+LVADMAETMY APGVGLA++QVDVHEQ+++ Sbjct: 1 MPLLNILRYPDPRLHKIARPVTVFDDRLKQLVADMAETMYDAPGVGLASSQVDVHEQLII 60 Query: 61 IDVSDDGKNLQVFINPEIVWASEDKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120 +D+SD+ L+V INPEI WAS + ++YDEGCLSVPG+YDGVER AR+KVRA D DGK F Sbjct: 61 VDISDNQSELRVLINPEITWASTEMQLYDEGCLSVPGVYDGVERHARIKVRALDVDGKEF 120 Query: 121 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEERELKK 169 + AD LLAVCIQHEMDHLKGKVFVEYLSPLKRNRIK K+ KEEREL + Sbjct: 121 DTTADGLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKAKMLKEERELNR 169 >ref|YP_001098483.1| peptide deformylase [Herminiimonas arsenicoxydans] emb|CAL60354.1| Peptide deformylase (PDF) [Herminiimonas arsenicoxydans] Length = 176 Score = 278 bits (710), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 129/169 (76%), Positives = 149/169 (88%) Query: 1 MALLNILRYPDPRLHKIAAPVTVFDERIKKLVADMAETMYAAPGVGLAATQVDVHEQVVV 60 M++LNILRYPD RLHKIA PVT FD RIK LVADMAETMY APGVGLAA+QVDVHEQV+V Sbjct: 1 MSILNILRYPDSRLHKIAKPVTTFDARIKTLVADMAETMYDAPGVGLAASQVDVHEQVIV 60 Query: 61 IDVSDDGKNLQVFINPEIVWASEDKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120 ID S+ L+ +INPE++W S + ++YDEGCLSVPG+YDGVER A+VKVRA+DADGK F Sbjct: 61 IDTSETRTELRAYINPELIWVSPEMQIYDEGCLSVPGVYDGVERHAKVKVRAYDADGKQF 120 Query: 121 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEERELKK 169 E++A+ LLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTK+ KEEREL + Sbjct: 121 ELEAEGLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKMLKEERELNR 169 >ref|ZP_00945651.1| Peptide deformylase [Ralstonia solanacearum UW551] gb|EAP71837.1| Peptide deformylase [Ralstonia solanacearum UW551] Length = 169 Score = 260 bits (665), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 123/166 (74%), Positives = 145/166 (87%) Query: 1 MALLNILRYPDPRLHKIAAPVTVFDERIKKLVADMAETMYAAPGVGLAATQVDVHEQVVV 60 MALLNIL+YPDPRLHK+A PV D+RI+KLVADMAETMY APG+GLAATQVDVHE+V+ Sbjct: 1 MALLNILQYPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 60 Query: 61 IDVSDDGKNLQVFINPEIVWASEDKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120 IDVS+ L+VFINPEIVWAS++++V+DEGCLSVP IYD VERP RV+VRA + G++F Sbjct: 61 IDVSESRDELRVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGESF 120 Query: 121 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEERE 166 E+DAD LLAVCIQHEMDHL GKVFVEYLSPLK+NRIK KL+K + E Sbjct: 121 ELDADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQFE 166 >ref|YP_002258341.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein [Ralstonia solanacearum IPO1609] emb|CAQ60262.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein [Ralstonia solanacearum IPO1609] Length = 174 Score = 260 bits (665), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 123/166 (74%), Positives = 145/166 (87%) Query: 1 MALLNILRYPDPRLHKIAAPVTVFDERIKKLVADMAETMYAAPGVGLAATQVDVHEQVVV 60 MALLNIL+YPDPRLHK+A PV D+RI+KLVADMAETMY APG+GLAATQVDVHE+V+ Sbjct: 6 MALLNILQYPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 65 Query: 61 IDVSDDGKNLQVFINPEIVWASEDKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120 IDVS+ L+VFINPEIVWAS++++V+DEGCLSVP IYD VERP RV+VRA + G++F Sbjct: 66 IDVSESRDELRVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGESF 125 Query: 121 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEERE 166 E+DAD LLAVCIQHEMDHL GKVFVEYLSPLK+NRIK KL+K + E Sbjct: 126 ELDADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQFE 171 >ref|YP_002983292.1| peptide deformylase [Ralstonia pickettii 12D] ref|ZP_07675013.1| peptide deformylase [Ralstonia sp. 5_7_47FAA] gb|ACS64620.1| peptide deformylase [Ralstonia pickettii 12D] gb|EFP66611.1| peptide deformylase [Ralstonia sp. 5_7_47FAA] Length = 171 Score = 260 bits (665), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 121/166 (72%), Positives = 147/166 (88%) Query: 1 MALLNILRYPDPRLHKIAAPVTVFDERIKKLVADMAETMYAAPGVGLAATQVDVHEQVVV 60 MALLNIL+YPDPRLHK+A PV V D+RI+KLVADMAETMY APGVGLAATQVDVHE+V+ Sbjct: 1 MALLNILQYPDPRLHKVAKPVAVVDDRIRKLVADMAETMYEAPGVGLAATQVDVHERVIT 60 Query: 61 IDVSDDGKNLQVFINPEIVWASEDKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120 IDVS+ L+VFINPEI+WAS++ +V+DEGCLSVP IYD V+RPARV+VRA + G+ F Sbjct: 61 IDVSESRDELRVFINPEILWASDEHKVWDEGCLSVPDIYDKVDRPARVRVRALNEKGETF 120 Query: 121 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEERE 166 E++AD+LLAVCIQHEMDHL GKVFVEYLSPLK+ RI++KL+K +R+ Sbjct: 121 ELEADDLLAVCIQHEMDHLMGKVFVEYLSPLKQTRIRSKLKKHQRD 166 >emb|CAQ56407.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein [Ralstonia solanacearum MolK2] Length = 174 Score = 260 bits (664), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 123/166 (74%), Positives = 145/166 (87%) Query: 1 MALLNILRYPDPRLHKIAAPVTVFDERIKKLVADMAETMYAAPGVGLAATQVDVHEQVVV 60 MALLNIL+YPDPRLHK+A PV D+RI+KLVADMAETMY APG+GLAATQVDVHE+V+ Sbjct: 6 MALLNILQYPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 65 Query: 61 IDVSDDGKNLQVFINPEIVWASEDKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120 IDVS+ L+VFINPEIVWAS++++V+DEGCLSVP IYD VERP RV+VRA + G++F Sbjct: 66 IDVSESRDELRVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGESF 125 Query: 121 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEERE 166 E+DAD LLAVCIQHEMDHL GKVFVEYLSPLK+NRIK KL+K + E Sbjct: 126 ELDADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQFE 171 >ref|YP_001028237.1| peptide deformylase [Burkholderia mallei NCTC 10229] ref|ZP_04910023.1| polypeptide deformylase [Burkholderia mallei FMH] gb|ABN03203.1| peptide deformylase [Burkholderia mallei NCTC 10229] gb|EDK52255.1| polypeptide deformylase [Burkholderia mallei FMH] Length = 216 Score = 259 bits (663), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 121/167 (72%), Positives = 144/167 (86%) Query: 1 MALLNILRYPDPRLHKIAAPVTVFDERIKKLVADMAETMYAAPGVGLAATQVDVHEQVVV 60 MALLNIL YPD RLHK+A PV D+RI+KLVADMAETMYAAPG+GLAATQVDVHE+V+V Sbjct: 50 MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 109 Query: 61 IDVSDDGKNLQVFINPEIVWASEDKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120 IDVS+D L+VFINPEIVW + K+VY+EGCLSVPG+YD VERP RV+VRA D G++F Sbjct: 110 IDVSEDKNELRVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGESF 169 Query: 121 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEEREL 167 E+D + LLAVCIQHEMDHL G+VFV+YLSPLK+ RIKTK++K ER + Sbjct: 170 ELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLERAM 216