BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0342.p (448 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778008.1| two component response regulator protein [He... 874 0.0 ref|YP_004700115.1| two component sigma54 specific Fis family tr... 588 e-166 ref|YP_004489964.1| two component, sigma54 specific, Fis family ... 583 e-164 ref|YP_001563082.1| Fis family two component sigma-54-specific t... 580 e-163 gb|EGP47311.1| Fis family two component sigma-54-specific transc... 572 e-161 ref|YP_004499581.1| two component, sigma54 specific, Fis family ... 546 e-153 ref|YP_001773933.1| two component, sigma54 specific, Fis family ... 458 e-127 ref|YP_626332.1| two component, sigma54 specific, Fis family tra... 457 e-126 ref|ZP_02379542.1| two component, sigma54 specific, transcriptio... 456 e-126 ref|YP_004232697.1| two component sigma54 specific transcription... 451 e-125 >ref|YP_003778008.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ66100.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 448 Score = 874 bits (2259), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/448 (98%), Positives = 442/448 (98%) Query: 1 MARILIVDDDAAFRGSLAETVSDLGHDVLEAGSTAAGLKLLAAHAVDAAIIDLRMPDEDG 60 MARILIVDDDAAFRGSLAETVSDLGHDVLEAGSTAAGLKLLAAHAVDAAI+DLRMPDEDG Sbjct: 1 MARILIVDDDAAFRGSLAETVSDLGHDVLEAGSTAAGLKLLAAHAVDAAIVDLRMPDEDG 60 Query: 61 LAFLQRAPAIAAIPCIMLTAYASGDNTIEAIRLGAFDHLTKPVPRAALVETLERALRQGA 120 LAFLQRAPAIAAIPCIMLTAYASGDNTIEAIRLGAFDHLTKPVPRAALVETLERALRQGA Sbjct: 61 LAFLQRAPAIAAIPCIMLTAYASGDNTIEAIRLGAFDHLTKPVPRAALVETLERALRQGA 120 Query: 121 SAPAAASPATEERNQLVGESEAMRQVFKQIGRAATSDATVLVLGETGTGKELVARALHRK 180 S PAAASPATEERNQLVGESEAMRQVFKQIGRAATSDATVLVLGETGTGKELVARALHR Sbjct: 121 STPAAASPATEERNQLVGESEAMRQVFKQIGRAATSDATVLVLGETGTGKELVARALHRN 180 Query: 181 GARAARPFVAVNCAAIPAELIESELFGHVKGAFSGATSPRLGRFQEADGGTLFLDEIGDM 240 GARAARPFVAVNCAAIPAELIESELFGHVKGAFSGATSPRLGRFQEADGGTLFLDEIGDM Sbjct: 181 GARAARPFVAVNCAAIPAELIESELFGHVKGAFSGATSPRLGRFQEADGGTLFLDEIGDM 240 Query: 241 ELATQAKILRVLQERELTPVGGNQSVRVDVRVIAATHRDLQHEITQGRFREDLWYRLQVL 300 ELATQAKILRVLQERELTPVGGNQSVRVDVRVIAATHRDLQHEITQGRFREDLWYRLQVL Sbjct: 241 ELATQAKILRVLQERELTPVGGNQSVRVDVRVIAATHRDLQHEITQGRFREDLWYRLQVL 300 Query: 301 TIMVPALRERPGDILTIAEHFLRQLGGDAPKRISPAAARLLLQHAWPGNVRELRNTMERA 360 TIMVPALRERPGDILTIAEHFLRQLGGDAPKRISPAAARLLLQHAWPGNVRELRNTMERA Sbjct: 301 TIMVPALRERPGDILTIAEHFLRQLGGDAPKRISPAAARLLLQHAWPGNVRELRNTMERA 360 Query: 361 AVMSHGLCIEAEDIGLSARHPVGAAGAASAPAIDWDGPLAAALAEVERVMIERALQGAAG 420 AVMSHGLCIEAEDIGLSAR P GAA AASAPAIDWDGPLA ALAEVERVMIERALQGAAG Sbjct: 361 AVMSHGLCIEAEDIGLSARPPAGAASAASAPAIDWDGPLAVALAEVERVMIERALQGAAG 420 Query: 421 NRAEAARRLGISRQQLYRRLEEAGKSHD 448 NRAEAARRLGISRQQLYRRLEEAGKSHD Sbjct: 421 NRAEAARRLGISRQQLYRRLEEAGKSHD 448 >ref|YP_004700115.1| two component sigma54 specific Fis family transcriptional regulator [Pseudomonas putida S16] gb|AEJ11235.1| two component sigma54 specific Fis family transcriptional regulator [Pseudomonas putida S16] Length = 449 Score = 588 bits (1515), Expect = e-166, Method: Compositional matrix adjust. Identities = 315/450 (70%), Positives = 360/450 (80%), Gaps = 13/450 (2%) Query: 1 MARILIVDDDAAFRGSLAETVSDLGHDVLEAGSTAAGLKLLAAHAVDAAIIDLRMPDEDG 60 MARILIVDDDAAFR SLAE + DLG+ VL+A +T AGL L VDAAI+DLR+P EDG Sbjct: 1 MARILIVDDDAAFRDSLAEMLQDLGYTVLQAETTDAGLHRLRTEDVDAAIVDLRLPGEDG 60 Query: 61 LAFLQRAPAIAAIPCIMLTAYASGDNTIEAIRLGAFDHLTKPVPRAALVETLERALRQGA 120 L FL+RA I+ +PCIMLTAYASG NTIEA+ LGAFDHLTKPV RAAL+ETLERALR+ A Sbjct: 61 LVFLRRAARISQVPCIMLTAYASGGNTIEAMSLGAFDHLTKPVTRAALIETLERALRRAA 120 Query: 121 SAP-----AAASPATEER---NQLVGESEAMRQVFKQIGRAATSDATVLVLGETGTGKEL 172 P A ASPA +E +LV SEAMRQVFK+IG AA SDAT L+LGETGTGKEL Sbjct: 121 KTPDNPQAAGASPAAKEPVDGTELVSSSEAMRQVFKRIGLAANSDATALILGETGTGKEL 180 Query: 173 VARALHRKGARAARPFVAVNCAAIPAELIESELFGHVKGAFSGATSPRLGRFQEADGGTL 232 VARALHR RA PFVAVNCAAIPAEL+ESELFGHVKGAF+GA + R GRF+EADGGTL Sbjct: 181 VARALHRNSGRATGPFVAVNCAAIPAELMESELFGHVKGAFTGAITERTGRFREADGGTL 240 Query: 233 FLDEIGDMELATQAKILRVLQERELTPVGGNQSVRVDVRVIAATHRDLQHEITQGRFRED 292 FLDEIGDM L+TQAKILRVLQERE+TPVG N++ V+VR+I ATHRDL + +GRFRED Sbjct: 241 FLDEIGDMPLSTQAKILRVLQEREITPVGANRAQPVNVRIIVATHRDLPSAVKEGRFRED 300 Query: 293 LWYRLQVLTIMVPALRERPGDILTIAEHFLRQLGGDAPKRISPAAARLLLQHAWPGNVRE 352 LWYRLQV+ + +P LRER GD+L +AEHFLR LGGD+PKR+S AAARLLL H+WPGNVRE Sbjct: 301 LWYRLQVVPLWLPPLRERLGDVLLLAEHFLRLLGGDSPKRLSAAAARLLLAHSWPGNVRE 360 Query: 353 LRNTMERAAVMSHGLCIEAEDIGLSARHPVGAAGAASAPAIDWDGPLAAALAEVERVMIE 412 LRN MERAA++SHG IEAE IGL AA IDW+GP+A A+A++ER MI Sbjct: 361 LRNAMERAAILSHGPVIEAEHIGLQT-----AAAPTPGLDIDWEGPMAQAVAQLEREMIV 415 Query: 413 RALQGAAGNRAEAARRLGISRQQLYRRLEE 442 RAL AGNRAEAARRLG+SRQQLYR+L E Sbjct: 416 RALAATAGNRAEAARRLGLSRQQLYRKLAE 445 >ref|YP_004489964.1| two component, sigma54 specific, Fis family transcriptional regulator [Delftia sp. Cs1-4] gb|AEF91609.1| two component, sigma54 specific, transcriptional regulator, Fis family [Delftia sp. Cs1-4] Length = 448 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 308/453 (67%), Positives = 356/453 (78%), Gaps = 16/453 (3%) Query: 1 MARILIVDDDAAFRGSLAETVSDLGHDVLEAGSTAAGLKLLAAHAVDAAIIDLRMPDEDG 60 MARILIVDDD AFR SLAE + DLGH V A + AAGL++L A +VD AI+DLRMP EDG Sbjct: 1 MARILIVDDDTAFRESLAEMLGDLGHAVSAAPTVAAGLQVLQAGSVDVAIVDLRMPGEDG 60 Query: 61 LAFLQRAPAIAAIPCIMLTAYASGDNTIEAIRLGAFDHLTKPVPRAALVETLERAL---- 116 LAFL++A ++ PCIMLTAYASG NTIEA+RLGAFDHLTKP+ R +LVE LERAL Sbjct: 61 LAFLRKARGLSRAPCIMLTAYASGGNTIEAMRLGAFDHLTKPIARTSLVEVLERALLSAG 120 Query: 117 RQGASAPAAASPATE-----ERNQLVGESEAMRQVFKQIGRAATSDATVLVLGETGTGKE 171 + G+ AA +PA + +LV SEAMRQVFK+IG AA SDATVLVLGETGTGKE Sbjct: 121 QAGSPENAAQNPAQNPEQEGDEAELVSGSEAMRQVFKRIGLAADSDATVLVLGETGTGKE 180 Query: 172 LVARALHRKGARAARPFVAVNCAAIPAELIESELFGHVKGAFSGATSPRLGRFQEADGGT 231 LVARALHR ARA RPFVAVNCAAIPA+L+ESELFGHVKGAF+GA S R GRF+EA GGT Sbjct: 181 LVARALHRNSARAERPFVAVNCAAIPADLMESELFGHVKGAFTGAVSDRAGRFREAQGGT 240 Query: 232 LFLDEIGDMELATQAKILRVLQERELTPVGGNQSVRVDVRVIAATHRDLQHEITQGRFRE 291 LFLDE+GDM L TQAKILR LQERE+TPVG ++++ V+VR+IAATHRDL + QGRFRE Sbjct: 241 LFLDEVGDMPLPTQAKILRALQEREITPVGASRALPVNVRIIAATHRDLPDAVRQGRFRE 300 Query: 292 DLWYRLQVLTIMVPALRERPGDILTIAEHFLRQLGGDAPKRISPAAARLLLQHAWPGNVR 351 DLWYRLQV+ + +P LRER GD+L +AEHFLRQ GG +PKR+ AARLLL H WPGNVR Sbjct: 301 DLWYRLQVVPVHLPPLRERLGDVLLLAEHFLRQGGGASPKRLGADAARLLLAHDWPGNVR 360 Query: 352 ELRNTMERAAVMSHGLCIEAEDIGLSARHPVGAAGAASAPAIDWDGPLAAALAEVERVMI 411 ELRN MERAA++ G I AE IGL AA PAIDW+GPLAAA+A++ER M+ Sbjct: 361 ELRNAMERAALLCPGPVIGAEHIGLQ-------PAAAHGPAIDWNGPLAAAVAQLEREMV 413 Query: 412 ERALQGAAGNRAEAARRLGISRQQLYRRLEEAG 444 RAL A GNRAEAARRLG+SRQQLYR+L E G Sbjct: 414 TRALAAATGNRAEAARRLGLSRQQLYRKLAEFG 446 >ref|YP_001563082.1| Fis family two component sigma-54-specific transcriptional regulator [Delftia acidovorans SPH-1] gb|ABX34697.1| two component, sigma54 specific, transcriptional regulator, Fis family [Delftia acidovorans SPH-1] Length = 448 Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust. Identities = 305/453 (67%), Positives = 355/453 (78%), Gaps = 16/453 (3%) Query: 1 MARILIVDDDAAFRGSLAETVSDLGHDVLEAGSTAAGLKLLAAHAVDAAIIDLRMPDEDG 60 MARILIVDDD AFR SLAE + DLGH V A + AAGL++L +VD AI+DLRMP EDG Sbjct: 1 MARILIVDDDTAFRESLAEMLGDLGHAVSAAPTVAAGLQVLQGGSVDVAIVDLRMPGEDG 60 Query: 61 LAFLQRAPAIAAIPCIMLTAYASGDNTIEAIRLGAFDHLTKPVPRAALVETLERAL---- 116 LAFL++A ++ PCIMLTAYASG NTIEA+RLGAFDHLTKP+ R +LVE LERAL Sbjct: 61 LAFLRKARGLSRAPCIMLTAYASGSNTIEAMRLGAFDHLTKPIARTSLVEVLERALLSAG 120 Query: 117 RQGASAPAAASPATEERNQ-----LVGESEAMRQVFKQIGRAATSDATVLVLGETGTGKE 171 + G+ AA +PA + + LV SEAMRQVFK+IG AA SDATVLVLGETGTGKE Sbjct: 121 QAGSPENAAQNPAQNQEPEGDDAELVSGSEAMRQVFKRIGLAADSDATVLVLGETGTGKE 180 Query: 172 LVARALHRKGARAARPFVAVNCAAIPAELIESELFGHVKGAFSGATSPRLGRFQEADGGT 231 LVARALHR ARA RPFVAVNCAAIPA+L+ESELFGHVKGAF+GA S R GRF+EA GGT Sbjct: 181 LVARALHRNSARAERPFVAVNCAAIPADLMESELFGHVKGAFTGAASDRAGRFREAQGGT 240 Query: 232 LFLDEIGDMELATQAKILRVLQERELTPVGGNQSVRVDVRVIAATHRDLQHEITQGRFRE 291 LFLDE+GDM L TQAKILR LQERE+TPVG ++++ V+VR+IAATHRDL + +GRFRE Sbjct: 241 LFLDEVGDMPLPTQAKILRALQEREITPVGASRALPVNVRIIAATHRDLPAAVKEGRFRE 300 Query: 292 DLWYRLQVLTIMVPALRERPGDILTIAEHFLRQLGGDAPKRISPAAARLLLQHAWPGNVR 351 DLWYRLQV+ + +P LRER GD+L +AEHFLRQ GG +PKR+ AA+LLL H WPGNVR Sbjct: 301 DLWYRLQVVPVHLPPLRERLGDVLLLAEHFLRQGGGASPKRLGADAAQLLLAHDWPGNVR 360 Query: 352 ELRNTMERAAVMSHGLCIEAEDIGLSARHPVGAAGAASAPAIDWDGPLAAALAEVERVMI 411 ELRN MERAA++ G I AE IGL AA PAIDW+GPLAAA+A++ER M+ Sbjct: 361 ELRNAMERAALLCPGPVIGAEHIGLQ-------PAAAHGPAIDWNGPLAAAVAQLEREMV 413 Query: 412 ERALQGAAGNRAEAARRLGISRQQLYRRLEEAG 444 RAL A GNRAEAARRLG+SRQQLYR+L E G Sbjct: 414 TRALAAATGNRAEAARRLGLSRQQLYRKLAEFG 446 >gb|EGP47311.1| Fis family two component sigma-54-specific transcriptional regulator [Achromobacter xylosoxidans AXX-A] Length = 445 Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust. Identities = 303/447 (67%), Positives = 352/447 (78%), Gaps = 7/447 (1%) Query: 1 MARILIVDDDAAFRGSLAETVSDLGHDVLEAGSTAAGLKLLAAHAVDAAIIDLRMPDEDG 60 MARILIVDDDAAF SL ET+ DLGH VL+A ST AGL L AVD AI+DLRMP +DG Sbjct: 1 MARILIVDDDAAFLDSLTETLQDLGHAVLQATSTRAGLNRLRTEAVDLAIVDLRMPGDDG 60 Query: 61 LAFLQRAPAIAAIPCIMLTAYASGDNTIEAIRLGAFDHLTKPVPRAALVETLERALRQ-- 118 L FL +A ++ +PCIMLTAYASG NTI+A+RLGAFDHLTKPV RAALVETL+RALR Sbjct: 61 LVFLHKAAELSPVPCIMLTAYASGGNTIDAMRLGAFDHLTKPVARAALVETLDRALRSVA 120 Query: 119 -GASAPAAASPATEERNQLVGESEAMRQVFKQIGRAATSDATVLVLGETGTGKELVARAL 177 + A A A + +LV S AMR+VFK+IG AA DATVL+LGETGTGKELVARAL Sbjct: 121 AASEDAAGADAAPVDDFELVSGSAAMREVFKRIGMAARGDATVLILGETGTGKELVARAL 180 Query: 178 HRKGARAARPFVAVNCAAIPAELIESELFGHVKGAFSGATSPRLGRFQEADGGTLFLDEI 237 HR ARA+RPFVAVNCAAIP EL+ESELFGHVKGAF+GAT+ R GRF+EA+GGTLFLDEI Sbjct: 181 HRSSARASRPFVAVNCAAIPVELMESELFGHVKGAFTGATNDRAGRFREAEGGTLFLDEI 240 Query: 238 GDMELATQAKILRVLQERELTPVGGNQSVRVDVRVIAATHRDLQHEITQGRFREDLWYRL 297 GDM LATQAKILRVLQERE+TPVGG + V V+VR++AATHRDL ++ G+FREDLWYRL Sbjct: 241 GDMPLATQAKILRVLQEREITPVGGARVVPVNVRIVAATHRDLPAAVSAGQFREDLWYRL 300 Query: 298 QVLTIMVPALRERPGDILTIAEHFLRQLGGDAPKRISPAAARLLLQHAWPGNVRELRNTM 357 QV+ I +P LR+R GD++ +AEHFLR++GG +PKR+S AAA+ LL H WPGNVRELRN M Sbjct: 301 QVVPIALPPLRDRLGDVVLLAEHFLRRIGGGSPKRLSRAAAQRLLAHGWPGNVRELRNAM 360 Query: 358 ERAAVMSHGLCIEAEDIGLSARHPVGAAGAASAPAIDWDGPLAAALAEVERVMIERALQG 417 ERAAV+ G+ IE E I L + H AG I DGPLA A+A +ER MI RAL Sbjct: 361 ERAAVLCRGMTIEPEHIDLPSLHAAAEAGG----DIALDGPLADAVAALERAMIRRALAA 416 Query: 418 AAGNRAEAARRLGISRQQLYRRLEEAG 444 AGNRAEAARRLG+SRQQLYR+L E G Sbjct: 417 TAGNRAEAARRLGLSRQQLYRKLAEHG 443 >ref|YP_004499581.1| two component, sigma54 specific, Fis family transcriptional regulator [Serratia sp. AS12] ref|YP_004504533.1| two component, sigma54 specific, Fis family transcriptional regulator [Serratia sp. AS9] gb|AEF44272.1| two component, sigma54 specific, transcriptional regulator, Fis family [Serratia sp. AS9] gb|AEF49224.1| two component, sigma54 specific, transcriptional regulator, Fis family [Serratia sp. AS12] gb|AEG26931.1| two component, sigma54 specific, transcriptional regulator, Fis family [Serratia sp. AS13] Length = 445 Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust. Identities = 284/450 (63%), Positives = 343/450 (76%), Gaps = 13/450 (2%) Query: 1 MARILIVDDDAAFRGSLAETVSDLGHDVLEAGSTAAGLKLLAAHAVDAAIIDLRMPDEDG 60 MA +LIVDDD AFR SLAE V+DL H +EA T AGL+ L A V AI+DLRMP +DG Sbjct: 1 MACVLIVDDDGAFRASLAEAVTDLHHHAIEADGTLAGLEQLRAGHVAVAIVDLRMPGDDG 60 Query: 61 LAFLQRAPAIA-AIPCIMLTAYASGDNTIEAIRLGAFDHLTKPVPRAALVETLERALRQG 119 L FL++A +A +PCIMLTA+ASG NTIEA+R+GAFDHLTKP+ RAAL E L RALRQ Sbjct: 61 LVFLRQARRLAPGVPCIMLTAHASGGNTIEAMRMGAFDHLTKPIGRAALQEVLMRALRQS 120 Query: 120 -----ASAPAAASPATEERNQLVGESEAMRQVFKQIGRAATSDATVLVLGETGTGKELVA 174 AS P+A P+ + + LVG SEAMRQVFK+IG+ A SD TVLV+GETGTGKELVA Sbjct: 121 EEDQSASKPSAERPSPD--DDLVGSSEAMRQVFKRIGQVANSDVTVLVMGETGTGKELVA 178 Query: 175 RALHRKGARAARPFVAVNCAAIPAELIESELFGHVKGAFSGATSPRLGRFQEADGGTLFL 234 R LHR + + PF+AVNC+AIP +LIESELFGHVKGAFSGA S R+GRF+EA+GGTLFL Sbjct: 179 RELHRNSSYSTGPFIAVNCSAIPTDLIESELFGHVKGAFSGAISDRIGRFREAEGGTLFL 238 Query: 235 DEIGDMELATQAKILRVLQERELTPVGGNQSVRVDVRVIAATHRDLQHEITQGRFREDLW 294 DEIGDM L TQAKILR LQERE+TPVGG ++ V VR++AATH DL + +G FREDLW Sbjct: 239 DEIGDMPLPTQAKILRTLQEREVTPVGGARTYPVKVRIVAATHHDLPLAVREGSFREDLW 298 Query: 295 YRLQVLTIMVPALRERPGDILTIAEHFLRQLGGDAPKRISPAAARLLLQHAWPGNVRELR 354 YRLQV+TI +P LRER GD++ +AEHFLR+ GGD PKR+S AA++LL H WPGNVREL+ Sbjct: 299 YRLQVITITLPPLRERLGDVILLAEHFLRRSGGDTPKRLSHQAAQVLLAHLWPGNVRELQ 358 Query: 355 NTMERAAVMSHGLCIEAEDIGLSARHPVGAAGAASAPAIDWDGPLAAALAEVERVMIERA 414 N ++RA+V+S G I+ +GL A PV + G P ++WDG L +A +ER MI RA Sbjct: 359 NAIKRASVLSQGSIIDPNQLGLCA-SPVESPG----PVLNWDGTLEETMAAIEREMIMRA 413 Query: 415 LQGAAGNRAEAARRLGISRQQLYRRLEEAG 444 L NRA+AARRLG+SRQQLYRRLE G Sbjct: 414 LAATGDNRAQAARRLGLSRQQLYRRLEHFG 443 >ref|YP_001773933.1| two component, sigma54 specific, Fis family transcriptional regulator [Burkholderia cenocepacia MC0-3] gb|ACA95438.1| two component, sigma54 specific, transcriptional regulator, Fis family [Burkholderia cenocepacia MC0-3] Length = 458 Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust. Identities = 258/460 (56%), Positives = 316/460 (68%), Gaps = 15/460 (3%) Query: 1 MARILIVDDDAAFRGSLAETVSDLGHDVLEAGSTAAGLKLL-AAHAVDAAIIDLRMPDED 59 MA ILIVDDDAAFR LAET++DLGH +EA S A L L ++ +D R+PD D Sbjct: 1 MANILIVDDDAAFRDGLAETLADLGHRAVEAASGRAALSALRDGGGIECVFLDFRLPDLD 60 Query: 60 GLAFLQRA---PAIAAIPCIMLTAYASGDNTIEAIRLGAFDHLTKPVPRAALVETLERAL 116 GLA L + PA+AAIP +MLTA+A+ DNTIEA+RLGAFDHLTKP+ R + + LER + Sbjct: 61 GLAVLAQLRDDPALAAIPVVMLTAHATSDNTIEAMRLGAFDHLTKPIGRRDIAQLLERIV 120 Query: 117 RQGASAPAAASPA--------TEERNQLVGESEAMRQVFKQIGRAATSDATVLVLGETGT 168 A+ P A +P+ + +R +L+G S AMR V KQIGRAA SDATVL+ GETGT Sbjct: 121 --SANQPPAPAPSDSGFAGEPSADRPRLLGVSAAMRDVQKQIGRAAMSDATVLLTGETGT 178 Query: 169 GKELVARALHRKGARAARPFVAVNCAAIPAELIESELFGHVKGAFSGATSPRLGRFQEAD 228 GKE+ AR LH AR A PFVAVNCAAIPA+L+ESELFGH +GAF+GA + R GR EAD Sbjct: 179 GKEVAARVLHAASARHAGPFVAVNCAAIPADLLESELFGHRRGAFTGAHADRAGRLVEAD 238 Query: 229 GGTLFLDEIGDMELATQAKILRVLQERELTPVGGNQSVRVDVRVIAATHRDLQHEITQGR 288 GGTLFLDEIGDM A QAK+LR LQER++TP+G +++ +D+RV+AATHRDL + G Sbjct: 239 GGTLFLDEIGDMPAAMQAKLLRALQERQVTPLGADRATVIDIRVVAATHRDLAAAVADGT 298 Query: 289 FREDLWYRLQVLTIMVPALRERPGDILTIAEHFLRQLGGDAPKRISPAAARLLLQHAWPG 348 FREDL+YRL V+ + +P L ER DIL +A HFL G ++ A R LL H WPG Sbjct: 299 FREDLFYRLNVIPLHLPPLAERVADILPLAAHFLGSAAGMRALHLTNDAQRALLDHRWPG 358 Query: 349 NVRELRNTMERAAVMSHGLCIEAEDIGLSARHPVGAAGAASAPAIDWDGPLAAALAEVER 408 NVRELRN MERAA ++ G + A D+GL A P +GA + PA D PL ALA VER Sbjct: 359 NVRELRNVMERAAALAPGPAVSAADLGLGAV-PARQSGADAVPAHLLDMPLPDALATVER 417 Query: 409 VMIERALQGAAGNRAEAARRLGISRQQLYRRLEEAGKSHD 448 I AL+ A GNRAEAAR+LGI RQ LY R+ G D Sbjct: 418 AAILHALERANGNRAEAARQLGIGRQSLYARMANLGIERD 457 >ref|YP_626332.1| two component, sigma54 specific, Fis family transcriptional regulator [Burkholderia cenocepacia AU 1054] ref|YP_840356.1| two component, sigma54 specific, Fis family transcriptional regulator [Burkholderia cenocepacia HI2424] gb|ABF81359.1| two component, sigma54 specific, transcriptional regulator, Fis family [Burkholderia cenocepacia AU 1054] gb|ABK13463.1| two component, sigma54 specific, transcriptional regulator, Fis family [Burkholderia cenocepacia HI2424] Length = 458 Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust. Identities = 257/460 (55%), Positives = 315/460 (68%), Gaps = 15/460 (3%) Query: 1 MARILIVDDDAAFRGSLAETVSDLGHDVLEAGSTAAGLKLL-AAHAVDAAIIDLRMPDED 59 MA ILIVDDDAAFR LAET++DLGH +EA S A L L ++ +D R+PD D Sbjct: 1 MANILIVDDDAAFRDGLAETLADLGHRAVEAASGRAALSALRDGGGIECVFLDFRLPDLD 60 Query: 60 GLAFLQRA---PAIAAIPCIMLTAYASGDNTIEAIRLGAFDHLTKPVPRAALVETLERAL 116 GLA L + PA+AAIP +MLTA+A+ DNTIEA+RLGAFDHLTKP+ R + + LER + Sbjct: 61 GLAVLAQLRDDPALAAIPVVMLTAHATSDNTIEAMRLGAFDHLTKPIGRRDIAQLLERIV 120 Query: 117 RQGASAPAAASPA--------TEERNQLVGESEAMRQVFKQIGRAATSDATVLVLGETGT 168 A+ P A +P+ + +R +L+G S AMR V KQIGRAA SDATVL+ GETGT Sbjct: 121 --SANQPPAPAPSDSGFAGEPSADRPRLLGVSAAMRDVQKQIGRAAMSDATVLLTGETGT 178 Query: 169 GKELVARALHRKGARAARPFVAVNCAAIPAELIESELFGHVKGAFSGATSPRLGRFQEAD 228 GKE+ AR LH AR A PFVAVNCAAIPA+L+ESELFGH +GAF+GA + R GR EAD Sbjct: 179 GKEVAARVLHAASARHAGPFVAVNCAAIPADLLESELFGHRRGAFTGAHADRAGRLVEAD 238 Query: 229 GGTLFLDEIGDMELATQAKILRVLQERELTPVGGNQSVRVDVRVIAATHRDLQHEITQGR 288 GGTLFLDEIGDM A QAK+LR LQER++ P+G +++ +D+RV+AATHRDL + G Sbjct: 239 GGTLFLDEIGDMPAAMQAKLLRALQERQVMPLGADRATTIDIRVVAATHRDLAAAVANGT 298 Query: 289 FREDLWYRLQVLTIMVPALRERPGDILTIAEHFLRQLGGDAPKRISPAAARLLLQHAWPG 348 FREDL+YRL V+ + +P L ER DIL +A HFL G ++ A R LL H WPG Sbjct: 299 FREDLFYRLNVIPLHLPPLAERVADILPLAAHFLGSAAGMRALHLTNDAQRALLDHRWPG 358 Query: 349 NVRELRNTMERAAVMSHGLCIEAEDIGLSARHPVGAAGAASAPAIDWDGPLAAALAEVER 408 NVRELRN MERAA ++ G + A D+GL A P +GA + PA D PL ALA VER Sbjct: 359 NVRELRNVMERAAALAPGPAVSAADLGLGAV-PARQSGADAVPAHLLDMPLPDALATVER 417 Query: 409 VMIERALQGAAGNRAEAARRLGISRQQLYRRLEEAGKSHD 448 I AL+ A GNRAEAAR+LGI RQ LY R+ G D Sbjct: 418 AAILHALERANGNRAEAARQLGIGRQSLYARMANLGIERD 457 >ref|ZP_02379542.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Burkholderia ubonensis Bu] Length = 459 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 258/460 (56%), Positives = 313/460 (68%), Gaps = 14/460 (3%) Query: 1 MARILIVDDDAAFRGSLAETVSDLGHDVLEAGSTAAGLKLLAAHA-VDAAIIDLRMPDED 59 MA ILIVDDD AFR LAET++DLGH V+EA S A L L V+ +D R+PD D Sbjct: 1 MATILIVDDDDAFRDGLAETLADLGHRVVEAASGRAALSALRDGGRVECIFLDFRLPDLD 60 Query: 60 G---LAFLQRAPAIAAIPCIMLTAYASGDNTIEAIRLGAFDHLTKPVPRAALVETLERAL 116 G LA L+ PA+AAIP +MLTA+A+ DNTI+A+RLGAFDHLTKP+ R + + LER + Sbjct: 61 GQAVLAQLRDDPALAAIPVVMLTAHATSDNTIDAMRLGAFDHLTKPIGRRDIAQLLERIV 120 Query: 117 RQGASAPAAASP--------ATEERNQLVGESEAMRQVFKQIGRAATSDATVLVLGETGT 168 PA A P A R +L+G S AMR V KQ+GRAA SDATVLV GETGT Sbjct: 121 -SANQPPADAEPHGGGFAREAASNRPRLLGVSAAMRDVQKQVGRAAMSDATVLVTGETGT 179 Query: 169 GKELVARALHRKGARAARPFVAVNCAAIPAELIESELFGHVKGAFSGATSPRLGRFQEAD 228 GKE+ AR LH R A+PFVAVNCAAIPA+L+ESELFGH +GAF+GA + R GR EAD Sbjct: 180 GKEVAARVLHAASTRHAQPFVAVNCAAIPADLLESELFGHRRGAFTGAHADRAGRLVEAD 239 Query: 229 GGTLFLDEIGDMELATQAKILRVLQERELTPVGGNQSVRVDVRVIAATHRDLQHEITQGR 288 GGTLFLDEIGDM A QAK+LR LQER++TP+G ++ +D+RV+AATHRDL + G Sbjct: 240 GGTLFLDEIGDMPAAMQAKLLRALQERQVTPLGADRPTAIDIRVVAATHRDLAAAVANGT 299 Query: 289 FREDLWYRLQVLTIMVPALRERPGDILTIAEHFLRQLGGDAPKRISPAAARLLLQHAWPG 348 FREDL+YRL V+ + +P L +R DIL +A HFL G ++ A R LL H WPG Sbjct: 300 FREDLFYRLNVIPLHLPPLADRVADILPLAAHFLACAAGTRALHLTNDAQRALLDHRWPG 359 Query: 349 NVRELRNTMERAAVMSHGLCIEAEDIGLSARHPVGAAGAASAPAIDWDGPLAAALAEVER 408 NVRELRN MERAA ++ G I A D+GL A P +GA + PA +D PL ALA VER Sbjct: 360 NVRELRNVMERAAALAPGPAIAAADLGLVAV-PALQSGADALPASLFDMPLPDALAAVER 418 Query: 409 VMIERALQGAAGNRAEAARRLGISRQQLYRRLEEAGKSHD 448 + RAL+ A GNRAEAAR+LGI RQ LY R+ G D Sbjct: 419 AAVLRALERANGNRAEAARQLGIGRQSLYARMANLGIERD 458 >ref|YP_004232697.1| two component sigma54 specific transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX44130.1| two component, sigma54 specific, transcriptional regulator, Fis family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 458 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 266/461 (57%), Positives = 315/461 (68%), Gaps = 22/461 (4%) Query: 1 MARILIVDDDAAFRGSLAETVSDLGHDVLEAGSTAAGLKLLAAHAVDAAIIDLRMPDEDG 60 MARIL VDDDAAFR SL ET+ LGH+V EA S L+ H A +D RMP DG Sbjct: 1 MARILAVDDDAAFRESLVETLQGLGHEVHEAASGDEALRQAGRHRYAAIFLDHRMPGMDG 60 Query: 61 L----AFLQRAPAIAAIPCIMLTAYASGDNTIEAIRLGAFDHLTKPVPRAALVETLERAL 116 L A R P + P ++LTAYASG TIEA+RLGAFDHLTKPV RAA++E LERAL Sbjct: 61 LETLAALAARVPELP--PVVVLTAYASGSGTIEAMRLGAFDHLTKPVGRAAVIEVLERAL 118 Query: 117 RQ-----GASAPAAASPATEERN-QLVGESEAMRQVFKQIGRAATSDATVLVLGETGTGK 170 R AA T+E + +L+G SEAMR+V K+IG AA S+A VLV GETGTGK Sbjct: 119 RSRAEADATPPAPAARAGTDEADGELIGVSEAMREVHKRIGLAAASEAPVLVQGETGTGK 178 Query: 171 ELVARALHRKGARAARPFVAVNCAAIPAELIESELFGHVKGAFSGATSPRLGRFQEADGG 230 ELVARALHR AR+A PFVA+NCAAIP EL+ESELFGHVKGAF+GA + R G F+ ADGG Sbjct: 179 ELVARALHRHSARSAGPFVALNCAAIPKELLESELFGHVKGAFTGAATDRPGCFRAADGG 238 Query: 231 TLFLDEIGDMELATQAKILRVLQERELTPVGGNQSVRVDVRVIAATHRDLQHEITQGRFR 290 L LDEIGDM QAK+LR LQE E+TP+G ++ V+VDVRV+AATHRDL + +GRFR Sbjct: 239 VLLLDEIGDMAPDVQAKLLRALQEGEVTPLGSHRPVKVDVRVVAATHRDLAAAVREGRFR 298 Query: 291 EDLWYRLQVLTIMVPALRERPGDILTIAEHFLRQLGGDAP-KRISPAAARLLLQHAWPGN 349 EDL YRL VL I +P LRER DI+ +AEHFLR+ P KR++P AAR LL H WPGN Sbjct: 299 EDLRYRLDVLQIALPPLRERLADIVPLAEHFLRRAAAPQPAKRLAPDAARALLAHGWPGN 358 Query: 350 VRELRNTMERAAVMSHGLCIEAEDIGLSARHPVGAAGAASAPA-----IDW-DGPLAAAL 403 VRELRN MER + G + A D+ L P G+A AS PA DW D PL A+ Sbjct: 359 VRELRNAMERVQALQRGPVVGAADLDLGP--PTGSA-TASGPADGALPQDWLDVPLPEAV 415 Query: 404 AEVERVMIERALQGAAGNRAEAARRLGISRQQLYRRLEEAG 444 +ER +I AL+ A GNR+ AARRLGI RQ LY +L + G Sbjct: 416 ERLERRLIAHALEQARGNRSLAARRLGIHRQLLYSKLAQYG 456