BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0333.p (247 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777999.1| XRE family transcription regulator protein [... 503 e-140 ref|YP_004750769.1| hypothetical protein CFU_0108 [Collimonas fu... 369 e-100 ref|ZP_05060559.1| protein containing HTH domain [gamma proteoba... 248 4e-64 ref|YP_431522.1| HTH domain-containing protein [Hahella chejuens... 243 2e-62 ref|ZP_02907285.1| helix-turn-helix domain protein [Burkholderia... 229 2e-58 ref|YP_001117164.1| XRE family transcriptional regulator [Burkho... 229 2e-58 ref|YP_002233917.1| putative transcriptional regulator [Burkhold... 229 3e-58 ref|YP_775469.1| XRE family transcriptional regulator [Burkholde... 229 3e-58 ref|ZP_01167303.1| Predicted transcriptional regulator [Oceanosp... 229 3e-58 ref|YP_001810742.1| helix-turn-helix domain-containing protein [... 229 4e-58 >ref|YP_003777999.1| XRE family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ66091.1| XRE family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 247 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 247/247 (100%), Positives = 247/247 (100%) Query: 1 MAQAESLVNALKNLLKARGITYAQLAKGLGLSEASVKRIFAERSFTLERLDQVCTLLGIQ 60 MAQAESLVNALKNLLKARGITYAQLAKGLGLSEASVKRIFAERSFTLERLDQVCTLLGIQ Sbjct: 1 MAQAESLVNALKNLLKARGITYAQLAKGLGLSEASVKRIFAERSFTLERLDQVCTLLGIQ 60 Query: 61 ISDLARMVVAEQPVPSRLTEEQEKKLVADPKLLLVAVHALHQWTLEEIVSSFAMTQAECI 120 ISDLARMVVAEQPVPSRLTEEQEKKLVADPKLLLVAVHALHQWTLEEIVSSFAMTQAECI Sbjct: 61 ISDLARMVVAEQPVPSRLTEEQEKKLVADPKLLLVAVHALHQWTLEEIVSSFAMTQAECI 120 Query: 121 RLLARLDKLGILDLLPNNRIRVRVAPDFSWLPGGPIQQYFRAQLRNDFFNSHFDKPGEKM 180 RLLARLDKLGILDLLPNNRIRVRVAPDFSWLPGGPIQQYFRAQLRNDFFNSHFDKPGEKM Sbjct: 121 RLLARLDKLGILDLLPNNRIRVRVAPDFSWLPGGPIQQYFRAQLRNDFFNSHFDKPGEKM 180 Query: 181 IMVSGTLSEESNAAVQRAMNRLSAEFLAAHQQDLALPLERRTGSAMIVALRPWSPAHFQQ 240 IMVSGTLSEESNAAVQRAMNRLSAEFLAAHQQDLALPLERRTGSAMIVALRPWSPAHFQQ Sbjct: 181 IMVSGTLSEESNAAVQRAMNRLSAEFLAAHQQDLALPLERRTGSAMIVALRPWSPAHFQQ 240 Query: 241 MRRQKQQ 247 MRRQKQQ Sbjct: 241 MRRQKQQ 247 >ref|YP_004750769.1| hypothetical protein CFU_0108 [Collimonas fungivorans Ter331] gb|AEK59946.1| protein containing HTH domain [Collimonas fungivorans Ter331] Length = 247 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 171/244 (70%), Positives = 206/244 (84%) Query: 1 MAQAESLVNALKNLLKARGITYAQLAKGLGLSEASVKRIFAERSFTLERLDQVCTLLGIQ 60 M+Q E+LV ALKN+LKARGITYAQLAK LGLSEASVKR+FAE+SFTLER DQ+C LL IQ Sbjct: 1 MSQTEALVGALKNVLKARGITYAQLAKSLGLSEASVKRVFAEKSFTLERFDQICMLLDIQ 60 Query: 61 ISDLARMVVAEQPVPSRLTEEQEKKLVADPKLLLVAVHALHQWTLEEIVSSFAMTQAECI 120 ISDLARM+ E PS+L+ EQE KLV+DPKLLL+AVHAL+ W+LEEI+ F ++AECI Sbjct: 61 ISDLARMIAHESATPSQLSPEQEDKLVSDPKLLLIAVHALNHWSLEEILEVFDFSKAECI 120 Query: 121 RLLARLDKLGILDLLPNNRIRVRVAPDFSWLPGGPIQQYFRAQLRNDFFNSHFDKPGEKM 180 R+LARLDKLGI+DL+PNN+IRVRVAPDF+WLPGGPIQQYFRAQLRNDFFNS FD+ GEKM Sbjct: 121 RILARLDKLGIIDLMPNNKIRVRVAPDFTWLPGGPIQQYFRAQLRNDFFNSRFDREGEKM 180 Query: 181 IMVSGTLSEESNAAVQRAMNRLSAEFLAAHQQDLALPLERRTGSAMIVALRPWSPAHFQQ 240 MVSG LS SN VQ M RL+AEF A H QDL+LP R G+++I+A+RPWSP F++ Sbjct: 181 TMVSGMLSRASNMIVQHHMRRLNAEFSALHHQDLSLPFSERFGTSLILAVRPWSPESFKK 240 Query: 241 MRRQ 244 ++++ Sbjct: 241 LQKK 244 >ref|ZP_05060559.1| protein containing HTH domain [gamma proteobacterium HTCC5015] gb|EDY87509.1| protein containing HTH domain [gamma proteobacterium HTCC5015] Length = 250 Score = 248 bits (634), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 115/237 (48%), Positives = 171/237 (72%), Gaps = 1/237 (0%) Query: 7 LVNALKNLLKARGITYAQLAKGLGLSEASVKRIFAERSFTLERLDQVCTLLGIQISDLAR 66 +V+ LK L+ G++YAQ+A+GLGLSEASVKR+F++R FT+ER + C + G+ + DL R Sbjct: 1 MVDELKKALREAGVSYAQVAQGLGLSEASVKRLFSQRQFTMERFEACCDMAGLGLGDLIR 60 Query: 67 MVVAEQPVPSRLTEEQEKKLVADPKLLLVAVHALHQWTLEEIVSSFAMTQAECIRLLARL 126 V + Q + L+ +QE +LV+DPKLL+VA A+++W+ +EI++++ + +E IR LA L Sbjct: 61 RVESAQYIGG-LSWQQETELVSDPKLLVVATSAINRWSYDEILATYEIKDSELIRYLAWL 119 Query: 127 DKLGILDLLPNNRIRVRVAPDFSWLPGGPIQQYFRAQLRNDFFNSHFDKPGEKMIMVSGT 186 D++ +++ LP NRI+ + DFSW GGPIQQYF AQ+++DFF FD+PGE + V+G Sbjct: 120 DRMHLIEFLPGNRIKPLITSDFSWQKGGPIQQYFEAQVQSDFFQCRFDRPGELRLFVTGM 179 Query: 187 LSEESNAAVQRAMNRLSAEFLAAHQQDLALPLERRTGSAMIVALRPWSPAHFQQMRR 243 LS +SN VQR M RL+ EF AHQ+DL PL R G++M++A+RPW F++MRR Sbjct: 180 LSPQSNERVQRRMQRLAQEFRHAHQEDLNEPLHNRYGTSMVMAMRPWELDVFRKMRR 236 >ref|YP_431522.1| HTH domain-containing protein [Hahella chejuensis KCTC 2396] gb|ABC27097.1| protein containing HTH domain [Hahella chejuensis KCTC 2396] Length = 250 Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 119/244 (48%), Positives = 174/244 (71%) Query: 1 MAQAESLVNALKNLLKARGITYAQLAKGLGLSEASVKRIFAERSFTLERLDQVCTLLGIQ 60 M Q +L++ LK LKA+G TYA +A L LSEASVKR+F+ERSF+L+RLD+VC LGI+ Sbjct: 1 MPQTIALIDTLKRTLKAQGKTYADVADALELSEASVKRLFSERSFSLQRLDRVCEFLGIE 60 Query: 61 ISDLARMVVAEQPVPSRLTEEQEKKLVADPKLLLVAVHALHQWTLEEIVSSFAMTQAECI 120 ISDL R + + LTEEQEK+L AD LLL A L++WT +EI+ ++ + + E + Sbjct: 61 ISDLVRSMENSSGEITELTEEQEKELAADINLLLTAQLLLNKWTFKEIIGTYQIEELEGV 120 Query: 121 RLLARLDKLGILDLLPNNRIRVRVAPDFSWLPGGPIQQYFRAQLRNDFFNSHFDKPGEKM 180 RLLA+LD++ +++LLP NR++++++ FSW P GPIQQ+F Q++N+F S F+K GE Sbjct: 121 RLLAKLDRMKLIELLPGNRVKLKISRHFSWRPHGPIQQFFEQQVQNEFLQSRFNKNGESR 180 Query: 181 IMVSGTLSEESNAAVQRAMNRLSAEFLAAHQQDLALPLERRTGSAMIVALRPWSPAHFQQ 240 + +SG LS SNA +QR M RL+AEF A +D ++PL + G+A ++A+RPW P F + Sbjct: 181 LFLSGMLSRRSNAEIQRRMQRLAAEFHALVAEDESIPLNDKFGTAFVMAIRPWEPQSFTR 240 Query: 241 MRRQ 244 +RR+ Sbjct: 241 LRRE 244 >ref|ZP_02907285.1| helix-turn-helix domain protein [Burkholderia ambifaria MEX-5] gb|EDT41571.1| helix-turn-helix domain protein [Burkholderia ambifaria MEX-5] Length = 245 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 109/244 (44%), Positives = 162/244 (66%) Query: 1 MAQAESLVNALKNLLKARGITYAQLAKGLGLSEASVKRIFAERSFTLERLDQVCTLLGIQ 60 M + L+ LK LKA+G+TY +A+ L +SE SVKR+FA FTLER+ ++ LLG Sbjct: 1 MTETAQLIETLKRQLKAQGMTYRDVARALDVSETSVKRLFASGRFTLERVAEIAQLLGYT 60 Query: 61 ISDLARMVVAEQPVPSRLTEEQEKKLVADPKLLLVAVHALHQWTLEEIVSSFAMTQAECI 120 +++L + A P LTE+QE LV+D KLLLVAV A++ WT+++IVS++ +TQAEC+ Sbjct: 61 LAELVQEASASAPRLRVLTEQQEAPLVSDEKLLLVAVCAVNYWTVQDIVSAYCLTQAECV 120 Query: 121 RLLARLDKLGILDLLPNNRIRVRVAPDFSWLPGGPIQQYFRAQLRNDFFNSHFDKPGEKM 180 + L LD++ ++ LLP +RIRVRVA DF WLPGGPI++YF A + +DF S FD PGE M Sbjct: 121 KYLLMLDRMNVIALLPGDRIRVRVARDFDWLPGGPIRRYFHAHVLDDFLGSRFDGPGETM 180 Query: 181 IMVSGTLSEESNAAVQRAMNRLSAEFLAAHQQDLALPLERRTGSAMIVALRPWSPAHFQQ 240 G L++ + A +++ + RL A+ A H + + PL ++ G+ +++A R W P F Sbjct: 181 TFSQGMLTDAAAAELEQELRRLGAKAAALHAESSSAPLGQKRGTGLLIAKRIWEPTGFHA 240 Query: 241 MRRQ 244 +RR Sbjct: 241 LRRH 244 >ref|YP_001117164.1| XRE family transcriptional regulator [Burkholderia vietnamiensis G4] gb|ABO57699.1| transcriptional regulator, XRE family [Burkholderia vietnamiensis G4] Length = 245 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 108/244 (44%), Positives = 163/244 (66%) Query: 1 MAQAESLVNALKNLLKARGITYAQLAKGLGLSEASVKRIFAERSFTLERLDQVCTLLGIQ 60 M + L++ LK LLKA G+TY +A+ L +SE SVKR+FA FTLER+ ++ LLG Sbjct: 1 MTETAQLIHTLKRLLKAHGMTYRDVARALDVSETSVKRLFASGRFTLERVVEIAQLLGYT 60 Query: 61 ISDLARMVVAEQPVPSRLTEEQEKKLVADPKLLLVAVHALHQWTLEEIVSSFAMTQAECI 120 +++L + A P LTE+QE LV+D KLLLVAV A++ WT+++IVS++ +T AEC+ Sbjct: 61 LAELVQEASASAPRLRVLTEQQEALLVSDEKLLLVAVCAVNYWTVQDIVSAYCLTHAECV 120 Query: 121 RLLARLDKLGILDLLPNNRIRVRVAPDFSWLPGGPIQQYFRAQLRNDFFNSHFDKPGEKM 180 + L LD++ ++ LLP +RIRVRVA DF WLPGGPI++YF A + +DF S FD PGE M Sbjct: 121 KYLLMLDRMNVIALLPGDRIRVRVARDFDWLPGGPIRRYFHAHVLDDFLGSRFDGPGETM 180 Query: 181 IMVSGTLSEESNAAVQRAMNRLSAEFLAAHQQDLALPLERRTGSAMIVALRPWSPAHFQQ 240 + G L++ + A +++ + RL ++ A H + + PL ++ G+ +++A R W P F Sbjct: 181 MFSQGMLTDAAAAELEQELRRLGSKAAALHAESSSAPLGQKRGTGLLIAKRIWEPTGFHA 240 Query: 241 MRRQ 244 +RR Sbjct: 241 LRRH 244 >ref|YP_002233917.1| putative transcriptional regulator [Burkholderia cenocepacia J2315] emb|CAR55158.1| putative transcriptional regulator [Burkholderia cenocepacia J2315] Length = 245 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 109/244 (44%), Positives = 164/244 (67%) Query: 1 MAQAESLVNALKNLLKARGITYAQLAKGLGLSEASVKRIFAERSFTLERLDQVCTLLGIQ 60 M + L+ LK LKA+G+TY +A+ L +SE SVKR+FA FTLER+ ++ LLG Sbjct: 1 MTETAQLIETLKRQLKAQGMTYRDVARALDVSETSVKRLFASGRFTLERVAEIAQLLGYT 60 Query: 61 ISDLARMVVAEQPVPSRLTEEQEKKLVADPKLLLVAVHALHQWTLEEIVSSFAMTQAECI 120 +++L + A P LTE QE LV+D KLLLVAV A++ WT+++IVS++ +TQAEC+ Sbjct: 61 LAELVQEASASAPRLRVLTEAQEALLVSDEKLLLVAVCAINYWTVQDIVSAYRLTQAECV 120 Query: 121 RLLARLDKLGILDLLPNNRIRVRVAPDFSWLPGGPIQQYFRAQLRNDFFNSHFDKPGEKM 180 + L LD++ ++ LLP +RIRVRVA DF WLPGGPI++YF A + +DF S FD PGE M Sbjct: 121 KYLLMLDRMNVIALLPGDRIRVRVARDFDWLPGGPIRRYFHAHVLDDFLGSRFDGPGETM 180 Query: 181 IMVSGTLSEESNAAVQRAMNRLSAEFLAAHQQDLALPLERRTGSAMIVALRPWSPAHFQQ 240 + G L++ + A +++ + RL+++ A H + + PL ++ G+A+++A R W P F Sbjct: 181 TFLQGMLTDAAAAELEQELRRLASKAAALHAESSSAPLGQKHGTALLIAKRIWEPTGFHA 240 Query: 241 MRRQ 244 +RR Sbjct: 241 LRRH 244 >ref|YP_775469.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] ref|ZP_02889935.1| helix-turn-helix domain protein [Burkholderia ambifaria IOP40-10] gb|ABI89135.1| transcriptional regulator, XRE family [Burkholderia ambifaria AMMD] gb|EDT04464.1| helix-turn-helix domain protein [Burkholderia ambifaria IOP40-10] Length = 245 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 109/244 (44%), Positives = 162/244 (66%) Query: 1 MAQAESLVNALKNLLKARGITYAQLAKGLGLSEASVKRIFAERSFTLERLDQVCTLLGIQ 60 M + L+ LK LKA+G+TY +A+ L +SE SVKR+FA FTLER+ ++ LLG Sbjct: 1 MTETAQLIETLKRQLKAQGMTYRDVARALDVSETSVKRLFASGRFTLERVAEIAQLLGYT 60 Query: 61 ISDLARMVVAEQPVPSRLTEEQEKKLVADPKLLLVAVHALHQWTLEEIVSSFAMTQAECI 120 +++L + A P LTE+QE LV+D KLLLVAV A++ WT+++IVS++ +TQAEC+ Sbjct: 61 LAELVQEASASAPRLRVLTEQQEALLVSDEKLLLVAVCAVNYWTVQDIVSAYCLTQAECV 120 Query: 121 RLLARLDKLGILDLLPNNRIRVRVAPDFSWLPGGPIQQYFRAQLRNDFFNSHFDKPGEKM 180 + L LD++ ++ LLP +RIRVRVA DF WLPGGPI++YF A + +DF S FD PGE M Sbjct: 121 KYLLMLDRMNVIALLPGDRIRVRVARDFDWLPGGPIRRYFHAHVLDDFLGSRFDGPGETM 180 Query: 181 IMVSGTLSEESNAAVQRAMNRLSAEFLAAHQQDLALPLERRTGSAMIVALRPWSPAHFQQ 240 G L++ + A +++ + RL A+ A H + + PL ++ G+ +++A R W P F Sbjct: 181 TFSQGMLTDAAAAELEQELRRLGAKAAALHAESSSAPLGQKRGTGLLIAKRIWEPTGFHA 240 Query: 241 MRRQ 244 +RR Sbjct: 241 LRRH 244 >ref|ZP_01167303.1| Predicted transcriptional regulator [Oceanospirillum sp. MED92] gb|EAR60652.1| Predicted transcriptional regulator [Oceanospirillum sp. MED92] Length = 243 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 105/241 (43%), Positives = 173/241 (71%) Query: 1 MAQAESLVNALKNLLKARGITYAQLAKGLGLSEASVKRIFAERSFTLERLDQVCTLLGIQ 60 MAQ L++ LK LKA+G TY +A+ L LSEASVKR+FAE++FTL+RL+ +C +L ++ Sbjct: 1 MAQVGPLIDTLKRELKAQGKTYIDVAEVLELSEASVKRLFAEKNFTLQRLETICDMLNLE 60 Query: 61 ISDLARMVVAEQPVPSRLTEEQEKKLVADPKLLLVAVHALHQWTLEEIVSSFAMTQAECI 120 +S+L + + +Q ++LT +QEK++ D LLL+ V + T ++I +++ + + ECI Sbjct: 61 LSELVQKMNKDQRHLTQLTRDQEKEIAGDLILLLITVSVISGMTFDDIQNAYDIQEPECI 120 Query: 121 RLLARLDKLGILDLLPNNRIRVRVAPDFSWLPGGPIQQYFRAQLRNDFFNSHFDKPGEKM 180 + LA+LD+L I+DLLP NR+++ VAP+F WLP GPIQQ+F+ ++ DFF+S FDK EK+ Sbjct: 121 QKLAKLDRLKIIDLLPGNRVKLLVAPNFHWLPNGPIQQFFQEKVEQDFFSSRFDKANEKL 180 Query: 181 IMVSGTLSEESNAAVQRAMNRLSAEFLAAHQQDLALPLERRTGSAMIVALRPWSPAHFQQ 240 I+ + L++ SNA +Q+ M RL+AEF Q+D + P ++++G+ M++A+R W + F++ Sbjct: 181 IVSNAILTDASNARIQKKMQRLAAEFNELMQEDHSAPNDKKSGTTMVLAIRQWQYSLFKK 240 Query: 241 M 241 + Sbjct: 241 I 241 >ref|YP_001810742.1| helix-turn-helix domain-containing protein [Burkholderia ambifaria MC40-6] gb|ACB66526.1| helix-turn-helix domain protein [Burkholderia ambifaria MC40-6] Length = 245 Score = 229 bits (583), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 109/244 (44%), Positives = 162/244 (66%) Query: 1 MAQAESLVNALKNLLKARGITYAQLAKGLGLSEASVKRIFAERSFTLERLDQVCTLLGIQ 60 M + L+ LK LKA+G+TY +A+ L +SE SVKR+FA FTLER+ ++ LLG Sbjct: 1 MTETAQLIETLKRQLKAQGMTYRDVARALDVSETSVKRLFASGRFTLERVVEIAQLLGYT 60 Query: 61 ISDLARMVVAEQPVPSRLTEEQEKKLVADPKLLLVAVHALHQWTLEEIVSSFAMTQAECI 120 +++L + A P LTE+QE LV+D KLLLVAV A++ WT+++IVS++ +TQAEC+ Sbjct: 61 LAELVQEASASAPRLRVLTEQQEALLVSDEKLLLVAVCAVNYWTVQDIVSAYCLTQAECV 120 Query: 121 RLLARLDKLGILDLLPNNRIRVRVAPDFSWLPGGPIQQYFRAQLRNDFFNSHFDKPGEKM 180 + L LD++ ++ LLP +RIRVRVA DF WLPGGPI++YF A + +DF S FD PGE M Sbjct: 121 KYLLMLDRMNVIALLPGDRIRVRVARDFDWLPGGPIRRYFHAHVLDDFLGSRFDGPGETM 180 Query: 181 IMVSGTLSEESNAAVQRAMNRLSAEFLAAHQQDLALPLERRTGSAMIVALRPWSPAHFQQ 240 G L++ + A +++ + RL A+ A H + + PL ++ G+ +++A R W P F Sbjct: 181 TFSQGMLTDAAAAELEQELRRLGAKAAALHAESSSAPLGQKRGTGLLIAKRIWEPTGFHA 240 Query: 241 MRRQ 244 +RR Sbjct: 241 LRRH 244