BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0330.p (100 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777996.1| cytochrome c2 protein [Herbaspirillum serope... 202 1e-50 ref|YP_297682.1| cytochrome c, class I [Ralstonia eutropha JMP13... 149 1e-34 ref|YP_001099139.1| putative cytochrome c [Herminiimonas arsenic... 144 5e-33 ref|YP_001352436.1| cytochrome c2 [Janthinobacterium sp. Marseil... 141 4e-32 ref|YP_002008713.1| cyochrome C2 precursor [Cupriavidus taiwanen... 138 2e-31 ref|YP_004682460.1| hypothetical protein CNE_2c22800 [Cupriavidu... 132 2e-29 ref|YP_841832.1| cytochrome c2 precursor [Ralstonia eutropha H16... 132 2e-29 ref|YP_586168.1| cytochrome c, class I [Cupriavidus metalliduran... 125 2e-27 ref|ZP_07777427.1| cytochrome c, class I [Pseudomonas fluorescen... 124 5e-27 ref|YP_004473874.1| cytochrome c class I [Pseudomonas fulva 12-X... 122 2e-26 >ref|YP_003777996.1| cytochrome c2 protein [Herbaspirillum seropedicae SmR1] gb|ADJ66088.1| cytochrome c2 protein [Herbaspirillum seropedicae SmR1] Length = 125 Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 98/100 (98%), Positives = 99/100 (99%) Query: 1 VGAGRAAFAKCASCHAVGPSARAGFGPQLSNVIGRKAGSTPDFKYSPAMANAGFVWTEDK 60 V AGRAAFAKCASCHAVGPSARAGFGPQLSNVIGRKAGSTPDFKYSPAMANAGFVWTEDK Sbjct: 26 VAAGRAAFAKCASCHAVGPSARAGFGPQLSNVIGRKAGSTPDFKYSPAMANAGFVWTEDK 85 Query: 61 LRAFLKAPSEVVPGNKMRFWGIGSDKQIDDILAYLRTFKP 100 LRAFLKAPS+VVPGNKMRFWGIGSDKQIDDILAYLRTFKP Sbjct: 86 LRAFLKAPSDVVPGNKMRFWGIGSDKQIDDILAYLRTFKP 125 >ref|YP_297682.1| cytochrome c, class I [Ralstonia eutropha JMP134] gb|AAZ62838.1| Cytochrome c, class I [Ralstonia eutropha JMP134] Length = 154 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 66/100 (66%), Positives = 85/100 (85%), Gaps = 1/100 (1%) Query: 1 VGAGRAAFA-KCASCHAVGPSARAGFGPQLSNVIGRKAGSTPDFKYSPAMANAGFVWTED 59 + AG+A FA +CASCH+VGPSAR FGPQL+ V GR+AGST D++YSPAM +G VWT D Sbjct: 55 IQAGKALFATRCASCHSVGPSARGAFGPQLNAVFGRRAGSTSDYRYSPAMTASGVVWTAD 114 Query: 60 KLRAFLKAPSEVVPGNKMRFWGIGSDKQIDDILAYLRTFK 99 LRAF+K+P +VVPG +MRFWGIG+D+QIDD+LAYL+T++ Sbjct: 115 TLRAFIKSPGKVVPGTRMRFWGIGNDQQIDDLLAYLQTYR 154 >ref|YP_001099139.1| putative cytochrome c [Herminiimonas arsenicoxydans] emb|CAL61012.1| Cytochrome c2 [Herminiimonas arsenicoxydans] Length = 122 Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 67/99 (67%), Positives = 82/99 (82%) Query: 1 VGAGRAAFAKCASCHAVGPSARAGFGPQLSNVIGRKAGSTPDFKYSPAMANAGFVWTEDK 60 V AG+AAFAKCASCH VG SAR FGPQL+ ++GR AG+T DFKYS AM N+ VW+E Sbjct: 24 VIAGKAAFAKCASCHQVGRSARGVFGPQLNGIVGRPAGATKDFKYSAAMMNSRIVWSEAS 83 Query: 61 LRAFLKAPSEVVPGNKMRFWGIGSDKQIDDILAYLRTFK 99 LRAFLK+P++VVP NKMRF+GIG+D+QIDD+LAYL +K Sbjct: 84 LRAFLKSPNDVVPENKMRFFGIGNDRQIDDLLAYLSQYK 122 >ref|YP_001352436.1| cytochrome c2 [Janthinobacterium sp. Marseille] gb|ABR90225.1| cytochrome c2 [Janthinobacterium sp. Marseille] Length = 122 Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 61/99 (61%), Positives = 81/99 (81%) Query: 1 VGAGRAAFAKCASCHAVGPSARAGFGPQLSNVIGRKAGSTPDFKYSPAMANAGFVWTEDK 60 V AG+ FAKCA+CH VGPSAR FGPQL+ ++GR AG+T D+KYS AM+++ VWTE Sbjct: 24 VAAGKRVFAKCANCHQVGPSARGNFGPQLNGIVGRTAGTTKDYKYSAAMSSSRVVWTEAN 83 Query: 61 LRAFLKAPSEVVPGNKMRFWGIGSDKQIDDILAYLRTFK 99 LRAF+++ ++V+PGNKMRF+GI +KQI D+LAYL+TFK Sbjct: 84 LRAFIQSTNDVIPGNKMRFFGISDEKQITDLLAYLQTFK 122 >ref|YP_002008713.1| cyochrome C2 precursor [Cupriavidus taiwanensis LMG 19424] emb|CAQ72661.1| Cytochrome c2 precursor [Cupriavidus taiwanensis LMG 19424] Length = 124 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 63/98 (64%), Positives = 78/98 (79%), Gaps = 1/98 (1%) Query: 3 AGRAAFA-KCASCHAVGPSARAGFGPQLSNVIGRKAGSTPDFKYSPAMANAGFVWTEDKL 61 AG+A FA +CASCH VG +ARAGFGPQL+ + GR AGST DF+YS AM + VW+ D L Sbjct: 27 AGKALFATRCASCHHVGRNARAGFGPQLNGIFGRTAGSTKDFQYSDAMRTSKVVWSHDTL 86 Query: 62 RAFLKAPSEVVPGNKMRFWGIGSDKQIDDILAYLRTFK 99 RAF+++P +VVPG KMRFWG+G D+QI D+LAYL TFK Sbjct: 87 RAFVRSPGKVVPGTKMRFWGLGDDQQITDLLAYLETFK 124 >ref|YP_004682460.1| hypothetical protein CNE_2c22800 [Cupriavidus necator N-1] gb|AEI81229.1| hypothetical protein CNE_2c22800 [Cupriavidus necator N-1] Length = 126 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 60/100 (60%), Positives = 76/100 (76%), Gaps = 1/100 (1%) Query: 1 VGAGRAAFA-KCASCHAVGPSARAGFGPQLSNVIGRKAGSTPDFKYSPAMANAGFVWTED 59 + AG+A F +CASCH VG +ARAGFGPQL+ + GR AG T DF+YS AM + VW+ D Sbjct: 27 IQAGKALFTTRCASCHHVGRNARAGFGPQLNGIFGRAAGGTSDFQYSEAMRASKVVWSHD 86 Query: 60 KLRAFLKAPSEVVPGNKMRFWGIGSDKQIDDILAYLRTFK 99 LRAF+ +P +VVPG KMRFWG+ DKQI D+LAYL+TF+ Sbjct: 87 TLRAFIHSPGKVVPGTKMRFWGLSDDKQISDLLAYLQTFQ 126 >ref|YP_841832.1| cytochrome c2 precursor [Ralstonia eutropha H16] emb|CAJ97102.1| cytochrome c2 precursor [Ralstonia eutropha H16] Length = 125 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 60/100 (60%), Positives = 76/100 (76%), Gaps = 1/100 (1%) Query: 1 VGAGRAAFA-KCASCHAVGPSARAGFGPQLSNVIGRKAGSTPDFKYSPAMANAGFVWTED 59 + AG+A FA +CASCH VG +ARAGFGPQL+ + GR AG T DF+YS AM + VW+ D Sbjct: 26 IQAGKALFATRCASCHHVGRNARAGFGPQLNGIFGRAAGGTSDFQYSEAMRASKVVWSHD 85 Query: 60 KLRAFLKAPSEVVPGNKMRFWGIGSDKQIDDILAYLRTFK 99 LRAF+ +P +VVPG KMRFWG+ DKQI D+LAYL+T + Sbjct: 86 TLRAFIHSPGKVVPGTKMRFWGLSDDKQISDLLAYLQTLQ 125 >ref|YP_586168.1| cytochrome c, class I [Cupriavidus metallidurans CH34] gb|ABF10899.1| cytochrome c, class I [Cupriavidus metallidurans CH34] Length = 129 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 58/100 (58%), Positives = 74/100 (74%), Gaps = 1/100 (1%) Query: 1 VGAGRAAFAK-CASCHAVGPSARAGFGPQLSNVIGRKAGSTPDFKYSPAMANAGFVWTED 59 V G+ F + CASCH VGPSAR FGPQL+ V GRKAGST D++YS AM + VW++ Sbjct: 30 VQTGKETFTRLCASCHRVGPSARGAFGPQLNGVFGRKAGSTADYRYSDAMKTSNVVWSDA 89 Query: 60 KLRAFLKAPSEVVPGNKMRFWGIGSDKQIDDILAYLRTFK 99 L AF+++P +VVPG KMRFWG+ +QI D+LAYLRTF+ Sbjct: 90 TLGAFVQSPGKVVPGTKMRFWGMSDPQQIADLLAYLRTFQ 129 >ref|ZP_07777427.1| cytochrome c, class I [Pseudomonas fluorescens WH6] gb|EFQ61305.1| cytochrome c, class I [Pseudomonas fluorescens WH6] Length = 124 Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 56/99 (56%), Positives = 72/99 (72%), Gaps = 1/99 (1%) Query: 3 AGRAAFAK-CASCHAVGPSARAGFGPQLSNVIGRKAGSTPDFKYSPAMANAGFVWTEDKL 61 AG F K C CH+VG AR GFGPQL+ +IGR AG+T D++YS AM N+G VWT DKL Sbjct: 25 AGGKLFTKTCGGCHSVGEGARGGFGPQLNGIIGRPAGTTTDYQYSDAMKNSGVVWTRDKL 84 Query: 62 RAFLKAPSEVVPGNKMRFWGIGSDKQIDDILAYLRTFKP 100 A+++AP VV G +M FWGI ++I++ILAYL TF+P Sbjct: 85 AAYIEAPKNVVSGTRMIFWGISDQEKIENILAYLETFQP 123 >ref|YP_004473874.1| cytochrome c class I [Pseudomonas fulva 12-X] gb|AEF21780.1| cytochrome c class I [Pseudomonas fulva 12-X] Length = 138 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 56/97 (57%), Positives = 67/97 (69%), Gaps = 1/97 (1%) Query: 1 VGAGRAAFAK-CASCHAVGPSARAGFGPQLSNVIGRKAGSTPDFKYSPAMANAGFVWTED 59 + AG A F + C +CH VGP ARA FGPQL+ + GR AG+T D+KYSPAM A VW D Sbjct: 37 IAAGEALFKRVCGNCHNVGPGARAAFGPQLNGIFGRHAGATRDYKYSPAMQQAEVVWDHD 96 Query: 60 KLRAFLKAPSEVVPGNKMRFWGIGSDKQIDDILAYLR 96 L AF+K VVPGNKMRFWGIG +ID +L YL+ Sbjct: 97 TLSAFIKDSDSVVPGNKMRFWGIGDQDKIDGLLLYLK 133