BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0314.p (277 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777981.1| amino acid ABC transporter permease [Herbasp... 553 e-156 ref|YP_982304.1| polar amino acid ABC transporter inner membrane... 260 2e-67 ref|YP_003962779.1| polar amino acid ABC transporter inner membr... 252 5e-65 ref|YP_001415090.1| polar amino acid ABC transporter inner membr... 250 2e-64 ref|YP_001769970.1| polar amino acid ABC transporter inner membr... 246 3e-63 ref|YP_001526199.1| amino acid ABC transporter permease [Azorhiz... 244 7e-63 ref|YP_001768635.1| polar amino acid ABC transporter inner membr... 243 3e-62 ref|YP_003693667.1| polar amino acid ABC transporter inner membr... 241 1e-61 ref|YP_003777258.1| amino acid ABC transporter permease [Herbasp... 236 4e-60 ref|YP_002541294.1| amino acid ABC transporter [Agrobacterium ra... 234 1e-59 >ref|YP_003777981.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ66073.1| ABC-type amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 277 Score = 553 bits (1426), Expect = e-156, Method: Compositional matrix adjust. Identities = 277/277 (100%), Positives = 277/277 (100%) Query: 1 MNFSLDFSPLAPYWPVFLHGAWLTLKMTTLAVIVGVAIGIFVAFAKNSPHRWLARGCSAY 60 MNFSLDFSPLAPYWPVFLHGAWLTLKMTTLAVIVGVAIGIFVAFAKNSPHRWLARGCSAY Sbjct: 1 MNFSLDFSPLAPYWPVFLHGAWLTLKMTTLAVIVGVAIGIFVAFAKNSPHRWLARGCSAY 60 Query: 61 IEVVRNTPFLVQIFLLYFGLASLGIRMPTFAAAVLAMIINIAAYAAEIIRAGLDSVPRGQ 120 IEVVRNTPFLVQIFLLYFGLASLGIRMPTFAAAVLAMIINIAAYAAEIIRAGLDSVPRGQ Sbjct: 61 IEVVRNTPFLVQIFLLYFGLASLGIRMPTFAAAVLAMIINIAAYAAEIIRAGLDSVPRGQ 120 Query: 121 IEAAQCLGLSVWRIRWHVMLQPAIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 IEAAQCLGLSVWRIRWHVMLQPAIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV Sbjct: 121 IEAAQCLGLSVWRIRWHVMLQPAIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 Query: 181 QSDTFRSLETYLVVAALYLVLAILVKLVAYAIGETIFKRRRTLRRAAAQGRRTPVSRLPA 240 QSDTFRSLETYLVVAALYLVLAILVKLVAYAIGETIFKRRRTLRRAAAQGRRTPVSRLPA Sbjct: 181 QSDTFRSLETYLVVAALYLVLAILVKLVAYAIGETIFKRRRTLRRAAAQGRRTPVSRLPA 240 Query: 241 TDPAAMAPLAHVPYVHPASRPVAVNTAASLRIEGSAS 277 TDPAAMAPLAHVPYVHPASRPVAVNTAASLRIEGSAS Sbjct: 241 TDPAAMAPLAHVPYVHPASRPVAVNTAASLRIEGSAS 277 >ref|YP_982304.1| polar amino acid ABC transporter inner membrane subunit [Polaromonas naphthalenivorans CJ2] gb|ABM37383.1| amino acid ABC transporter membrane protein 1, PAAT family [Polaromonas naphthalenivorans CJ2] Length = 227 Score = 260 bits (664), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 122/223 (54%), Positives = 170/223 (76%) Query: 1 MNFSLDFSPLAPYWPVFLHGAWLTLKMTTLAVIVGVAIGIFVAFAKNSPHRWLARGCSAY 60 M++SLDFS YWP L GAW TL ++ A + G +G+F A K WLAR SAY Sbjct: 1 MHYSLDFSAPLAYWPELLAGAWTTLALSLSATVFGFLLGVFCALTKTGHSVWLARVASAY 60 Query: 61 IEVVRNTPFLVQIFLLYFGLASLGIRMPTFAAAVLAMIINIAAYAAEIIRAGLDSVPRGQ 120 +E++RNTP LVQIF++YFGL+SLG+++ F AA +A+++N+ AY +EI+RAG+DS+PRGQ Sbjct: 61 VELIRNTPLLVQIFIVYFGLSSLGLQVGAFTAATIALVVNVGAYTSEIVRAGIDSIPRGQ 120 Query: 121 IEAAQCLGLSVWRIRWHVMLQPAIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 +EAA+C+ LS W+ HV+L PAIERVYPALTSQ++L+M AS++ SQISAEELTA+AN + Sbjct: 121 MEAAECMALSRWQTLRHVVLPPAIERVYPALTSQYVLLMLASSICSQISAEELTAVANRI 180 Query: 181 QSDTFRSLETYLVVAALYLVLAILVKLVAYAIGETIFKRRRTL 223 QSDTFRS+ETYL+VA YL+++++++ + + I F R R L Sbjct: 181 QSDTFRSVETYLIVAGAYLLMSLVMRAIFWLIAMVAFPRLRRL 223 >ref|YP_003962779.1| polar amino acid ABC transporter inner membrane protein [Ketogulonicigenium vulgare Y25] gb|ADO41479.1| polar amino acid ABC transporter, inner membrane subunit [Ketogulonicigenium vulgare Y25] gb|AEM42333.1| Amino acid ABC transporter permease protein [Ketogulonigenium vulgarum WSH-001] Length = 226 Score = 252 bits (643), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 115/223 (51%), Positives = 165/223 (73%) Query: 1 MNFSLDFSPLAPYWPVFLHGAWLTLKMTTLAVIVGVAIGIFVAFAKNSPHRWLARGCSAY 60 M++ +F+ L PYWP F+ GAW+TL++T AVI G+ IG+ A A+ S L Y Sbjct: 1 MSYQFNFAALVPYWPDFISGAWVTLQLTVGAVIFGMVIGVLCAIARRSRFVALRSVAGVY 60 Query: 61 IEVVRNTPFLVQIFLLYFGLASLGIRMPTFAAAVLAMIINIAAYAAEIIRAGLDSVPRGQ 120 +E VRNTPF+VQIF L+FG++S+G+RMP AA+ A+++N+ AY AEIIRAG+D++P+GQ Sbjct: 61 VETVRNTPFIVQIFFLFFGMSSVGVRMPIMVAAIFALVVNVGAYTAEIIRAGMDAIPKGQ 120 Query: 121 IEAAQCLGLSVWRIRWHVMLQPAIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 IEAA+ LGLS ++I ++L PAIE+VYPALTSQF+LMM +++ SQISAEELT +AN + Sbjct: 121 IEAAEALGLSQFQIYRDIILMPAIEKVYPALTSQFVLMMLTTSICSQISAEELTGVANNI 180 Query: 181 QSDTFRSLETYLVVAALYLVLAILVKLVAYAIGETIFKRRRTL 223 QS+TFRS ETY+V+ Y+ + ++++ + IG F RRR + Sbjct: 181 QSNTFRSFETYIVIGLFYIGITLMMRFGFWLIGLYAFPRRRVM 223 >ref|YP_001415090.1| polar amino acid ABC transporter inner membrane subunit [Xanthobacter autotrophicus Py2] gb|ABS65433.1| polar amino acid ABC transporter, inner membrane subunit [Xanthobacter autotrophicus Py2] Length = 227 Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 116/226 (51%), Positives = 166/226 (73%) Query: 1 MNFSLDFSPLAPYWPVFLHGAWLTLKMTTLAVIVGVAIGIFVAFAKNSPHRWLARGCSAY 60 M + DF+ L PYW F G WLTL+++ +A ++G +G A ++ W+ + Y Sbjct: 1 MTYQFDFAALLPYWREFAMGVWLTLQLSFVATVLGFVLGTLCAIGRSDGAPWVKALVACY 60 Query: 61 IEVVRNTPFLVQIFLLYFGLASLGIRMPTFAAAVLAMIINIAAYAAEIIRAGLDSVPRGQ 120 +EV+RNTP LVQIF++YFG+A+LG+ + AAVLA+++N+ AY +EI+RAGL+S+ + Q Sbjct: 61 VEVIRNTPLLVQIFIIYFGIATLGLHVDANVAAVLALVVNVGAYTSEIVRAGLESIHKSQ 120 Query: 121 IEAAQCLGLSVWRIRWHVMLQPAIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 +EAA+CLGLS + WHV+++PAIERVYPALTSQ++L+M AS++ SQISAEELTA+AN + Sbjct: 121 LEAAECLGLSRPQTYWHVIVRPAIERVYPALTSQYVLLMLASSITSQISAEELTAVANRI 180 Query: 181 QSDTFRSLETYLVVAALYLVLAILVKLVAYAIGETIFKRRRTLRRA 226 QSDTFRS ETY+VV LYL L+ +V++ + G +F RRR L A Sbjct: 181 QSDTFRSFETYIVVGVLYLALSFVVRIAFWLFGLVVFVRRRKLGTA 226 >ref|YP_001769970.1| polar amino acid ABC transporter inner membrane subunit [Methylobacterium sp. 4-46] gb|ACA17536.1| polar amino acid ABC transporter, inner membrane subunit [Methylobacterium sp. 4-46] Length = 227 Score = 246 bits (628), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 122/223 (54%), Positives = 160/223 (71%) Query: 1 MNFSLDFSPLAPYWPVFLHGAWLTLKMTTLAVIVGVAIGIFVAFAKNSPHRWLARGCSAY 60 M+ LDF + WP FL GA LTL+++ +A VG A+G A + S H L R C Y Sbjct: 1 MSLDLDFGAVLERWPSFLDGALLTLELSGIATAVGGALGGITAIGRRSRHAALRRLCEVY 60 Query: 61 IEVVRNTPFLVQIFLLYFGLASLGIRMPTFAAAVLAMIINIAAYAAEIIRAGLDSVPRGQ 120 +E +RNTP LVQIFL+YFGLASLG R A LA+ IN+ AY EI+RAGLD++PRGQ Sbjct: 61 VEAIRNTPLLVQIFLVYFGLASLGFRFSALTVAALALTINVGAYTTEIVRAGLDAIPRGQ 120 Query: 121 IEAAQCLGLSVWRIRWHVMLQPAIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 IEAA+ L LS +I HV+L PAIERVYP+LTSQF+L+M AS++ SQISAEELTA+AN + Sbjct: 121 IEAAEGLALSRAQIYRHVVLLPAIERVYPSLTSQFVLLMLASSVTSQISAEELTAVANYI 180 Query: 181 QSDTFRSLETYLVVAALYLVLAILVKLVAYAIGETIFKRRRTL 223 QSDT+R+ ETY+VVA +Y+ L+ +++ + +G +F RRR L Sbjct: 181 QSDTYRAFETYIVVALIYVALSFIMRAGFWGLGLVLFPRRRRL 223 >ref|YP_001526199.1| amino acid ABC transporter permease [Azorhizobium caulinodans ORS 571] dbj|BAF89281.1| amino acid ABC transporter permease protein [Azorhizobium caulinodans ORS 571] Length = 227 Score = 244 bits (624), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 114/226 (50%), Positives = 165/226 (73%) Query: 1 MNFSLDFSPLAPYWPVFLHGAWLTLKMTTLAVIVGVAIGIFVAFAKNSPHRWLARGCSAY 60 M + DF+ L P+W F G WLTL+++ ++ ++G +G A + W+ + Y Sbjct: 1 MTYQFDFAVLLPFWREFAMGVWLTLQLSLISTVLGFILGTLCAIGRADGPPWVKFLVATY 60 Query: 61 IEVVRNTPFLVQIFLLYFGLASLGIRMPTFAAAVLAMIINIAAYAAEIIRAGLDSVPRGQ 120 +E++RNTP LVQ+F++YFG+A+LGI + AAVLA+++N+ AY +EI+RAGL+S+ + Q Sbjct: 61 VEIIRNTPLLVQVFIVYFGIATLGIHVSANLAAVLALVVNVGAYTSEIVRAGLESIHKSQ 120 Query: 121 IEAAQCLGLSVWRIRWHVMLQPAIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 +EAA+CLGLS + WHV+++PAIERVYPALTSQ++L+M AS++ SQISAEELTA+AN + Sbjct: 121 LEAAECLGLSRPQTYWHVIVRPAIERVYPALTSQYVLLMLASSITSQISAEELTAVANRI 180 Query: 181 QSDTFRSLETYLVVAALYLVLAILVKLVAYAIGETIFKRRRTLRRA 226 QSDTFRS ETY+VV LYL L+ +V+L + G +F RRR L A Sbjct: 181 QSDTFRSFETYIVVGVLYLALSFVVRLAFWLFGLVVFVRRRKLGTA 226 >ref|YP_001768635.1| polar amino acid ABC transporter inner membrane subunit [Methylobacterium sp. 4-46] gb|ACA16201.1| polar amino acid ABC transporter, inner membrane subunit [Methylobacterium sp. 4-46] Length = 227 Score = 243 bits (619), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 127/223 (56%), Positives = 170/223 (76%) Query: 1 MNFSLDFSPLAPYWPVFLHGAWLTLKMTTLAVIVGVAIGIFVAFAKNSPHRWLARGCSAY 60 M + DF LA YWP FL GA TL+MT +A ++G+ IGI A + SP WL+R C Y Sbjct: 1 MRYRFDFEALAEYWPDFLMGALTTLEMTAVATVLGLLIGILCAVGRRSPRAWLSRLCGGY 60 Query: 61 IEVVRNTPFLVQIFLLYFGLASLGIRMPTFAAAVLAMIINIAAYAAEIIRAGLDSVPRGQ 120 +E VRNTP+L+Q+F LYFGLAS G+R+P AA+L +++N+ AY EI+RAG+D++P GQ Sbjct: 61 VETVRNTPYLIQVFFLYFGLASAGLRLPVLTAAILTLVVNVGAYTGEIVRAGMDTIPPGQ 120 Query: 121 IEAAQCLGLSVWRIRWHVMLQPAIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 +EAA+ LGL+ +I ++L+PA+ERVYPALTSQF+LMM AS++ SQISAEELTA+AN + Sbjct: 121 VEAAEALGLTRAQIYRDIILRPALERVYPALTSQFVLMMLASSVTSQISAEELTAVANNI 180 Query: 181 QSDTFRSLETYLVVAALYLVLAILVKLVAYAIGETIFKRRRTL 223 S TFRS ETYLVVA LYL+LA+L+KL +A+ + +F RRR L Sbjct: 181 TSITFRSFETYLVVAVLYLLLALLLKLAFHALAQILFPRRRRL 223 >ref|YP_003693667.1| polar amino acid ABC transporter inner membrane subunit [Starkeya novella DSM 506] gb|ADH89048.1| polar amino acid ABC transporter, inner membrane subunit [Starkeya novella DSM 506] Length = 227 Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 118/223 (52%), Positives = 160/223 (71%) Query: 1 MNFSLDFSPLAPYWPVFLHGAWLTLKMTTLAVIVGVAIGIFVAFAKNSPHRWLARGCSAY 60 M LDFS + W L GA LTL++ +AV+ G IG+F A + + + R C AY Sbjct: 1 MGLELDFSVVLDRWRSLLDGATLTLELAFIAVVCGAIIGVFGAIGRRGGNPLIERLCGAY 60 Query: 61 IEVVRNTPFLVQIFLLYFGLASLGIRMPTFAAAVLAMIINIAAYAAEIIRAGLDSVPRGQ 120 +E +RNTP LVQIFL+YFGL+SLG++ F A +A+ IN+ AY EI+RAG DS+ RGQ Sbjct: 61 VEGIRNTPLLVQIFLVYFGLSSLGLKFSAFTVAAVALTINVGAYTTEIMRAGFDSIVRGQ 120 Query: 121 IEAAQCLGLSVWRIRWHVMLQPAIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 IEAA+ LGLS +I WHV++ P IERVYPALTSQF+L+M AS++ SQISAEELTA+AN + Sbjct: 121 IEAAEGLGLSKAQIYWHVIIWPGIERVYPALTSQFVLLMLASSVTSQISAEELTAVANYI 180 Query: 181 QSDTFRSLETYLVVAALYLVLAILVKLVAYAIGETIFKRRRTL 223 QS+T+RS ETY+VVA +Y+ L+ +++ + +G +F RRR L Sbjct: 181 QSETYRSFETYIVVALIYVALSFVMRFGFWLLGLALFPRRRRL 223 >ref|YP_003777258.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65350.1| ABC-type amino acid transport system, permease protein [Herbaspirillum seropedicae SmR1] Length = 227 Score = 236 bits (601), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 116/224 (51%), Positives = 163/224 (72%), Gaps = 2/224 (0%) Query: 1 MNFSLDFSPLAPYWPVFLHGAWLTLKMTTLAVIVGVAIGIFVAFAKNSPHRWLARGCS-A 59 MN++ DF + W L GAWLT++++ L++++G A+G A A S L RG A Sbjct: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLA-LVRGLVLA 59 Query: 60 YIEVVRNTPFLVQIFLLYFGLASLGIRMPTFAAAVLAMIINIAAYAAEIIRAGLDSVPRG 119 Y+E++RNTP LVQ+FL++FGLAS+G ++ AAV+A+ +N+ AY EI+RAG++S+ G Sbjct: 60 YVEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPG 119 Query: 120 QIEAAQCLGLSVWRIRWHVMLQPAIERVYPALTSQFLLMMQASAMASQISAEELTAIANT 179 QIEAA+CLG+S + + WHV+L PA+ERVYP+LTSQF+L+M AS++ SQISAEELTA AN Sbjct: 120 QIEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANL 179 Query: 180 VQSDTFRSLETYLVVAALYLVLAILVKLVAYAIGETIFKRRRTL 223 VQS+TFRS E Y V+A YLVL+ L + +AI + F R+R L Sbjct: 180 VQSETFRSFEVYAVIAVAYLVLSFLFRGAFWAISQIAFVRKRKL 223 >ref|YP_002541294.1| amino acid ABC transporter [Agrobacterium radiobacter K84] gb|ACM29697.1| amino acid ABC transporter [Agrobacterium radiobacter K84] Length = 227 Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 115/226 (50%), Positives = 167/226 (73%) Query: 1 MNFSLDFSPLAPYWPVFLHGAWLTLKMTTLAVIVGVAIGIFVAFAKNSPHRWLARGCSAY 60 M++ DF+ L PYW F G WLTL+++ ++ ++G+ +G A + WL + Y Sbjct: 1 MSYQFDFASLLPYWKEFALGVWLTLQLSVISTVIGLVLGTLCAIGRADGGPWLRGIIATY 60 Query: 61 IEVVRNTPFLVQIFLLYFGLASLGIRMPTFAAAVLAMIINIAAYAAEIIRAGLDSVPRGQ 120 +EV+RNTP LVQ+FL+YFG+A+LG+ + AAV+A+++N+ AY EI+RAGL S+ + Q Sbjct: 61 VEVIRNTPLLVQVFLVYFGIATLGVHVSANMAAVVALVVNVGAYTCEIVRAGLQSIHKAQ 120 Query: 121 IEAAQCLGLSVWRIRWHVMLQPAIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 +EAA+CLGLS + WHV+++PAIERVYPALTSQ++L+M AS++ SQISAEELTA+AN + Sbjct: 121 LEAAECLGLSRRQTYWHVIIRPAIERVYPALTSQYVLLMLASSITSQISAEELTAVANRI 180 Query: 181 QSDTFRSLETYLVVAALYLVLAILVKLVAYAIGETIFKRRRTLRRA 226 QSDTFRS ETY+VV LYL+L+ +V++ + +G +F RRR L A Sbjct: 181 QSDTFRSFETYIVVGVLYLLLSFVVRIALWLLGLGLFVRRRKLGTA 226