BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0313.p (217 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777980.1| amino acid ABC transporter permease [Herbasp... 431 e-119 ref|YP_001768634.1| polar amino acid ABC transporter inner membr... 283 2e-74 ref|YP_001525533.1| amino acid ABC transporter permease [Azorhiz... 261 4e-68 ref|YP_003777259.1| amino acid ABC transporter permease [Herbasp... 259 1e-67 ref|YP_003774920.1| amino acid ABC transporter permease [Herbasp... 256 1e-66 ref|YP_001417339.1| polar amino acid ABC transporter inner membr... 249 2e-64 ref|YP_003962780.1| polar amino acid ABC transporter inner membr... 249 3e-64 ref|YP_841321.1| ABC transporter permease [Ralstonia eutropha H1... 248 4e-64 ref|ZP_08528169.1| ABC transporter, membrane spanning protein (a... 247 7e-64 ref|NP_355976.1| ABC transporter, membrane spanning protein (ami... 245 4e-63 >ref|YP_003777980.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ66072.1| ABC-type amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 431 bits (1107), Expect = e-119, Method: Compositional matrix adjust. Identities = 217/217 (100%), Positives = 217/217 (100%) Query: 1 MMGGFSWTYFFFMVQSIGWTLVLSALAFVLGGAGGFLVMLARISPHAWLRRPAILFIECV 60 MMGGFSWTYFFFMVQSIGWTLVLSALAFVLGGAGGFLVMLARISPHAWLRRPAILFIECV Sbjct: 1 MMGGFSWTYFFFMVQSIGWTLVLSALAFVLGGAGGFLVMLARISPHAWLRRPAILFIECV 60 Query: 61 QGIPLLILLFIVYFGLSVYGLVLPALVAAGLAMMIYTSAYLGDIWRGCVEAMPRPQWEAS 120 QGIPLLILLFIVYFGLSVYGLVLPALVAAGLAMMIYTSAYLGDIWRGCVEAMPRPQWEAS Sbjct: 61 QGIPLLILLFIVYFGLSVYGLVLPALVAAGLAMMIYTSAYLGDIWRGCVEAMPRPQWEAS 120 Query: 121 ECLSLTRWQTLRLVIIPQATRLSLPPTIGFLVQLIKMTSLASVIGFVELTRAGQIINNSI 180 ECLSLTRWQTLRLVIIPQATRLSLPPTIGFLVQLIKMTSLASVIGFVELTRAGQIINNSI Sbjct: 121 ECLSLTRWQTLRLVIIPQATRLSLPPTIGFLVQLIKMTSLASVIGFVELTRAGQIINNSI 180 Query: 181 FQPFLVFLLVGSFYFLLCYPLSRWSASMERKLNVSHR 217 FQPFLVFLLVGSFYFLLCYPLSRWSASMERKLNVSHR Sbjct: 181 FQPFLVFLLVGSFYFLLCYPLSRWSASMERKLNVSHR 217 >ref|YP_001768634.1| polar amino acid ABC transporter inner membrane subunit [Methylobacterium sp. 4-46] gb|ACA16200.1| polar amino acid ABC transporter, inner membrane subunit [Methylobacterium sp. 4-46] Length = 219 Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 136/216 (62%), Positives = 174/216 (80%) Query: 2 MGGFSWTYFFFMVQSIGWTLVLSALAFVLGGAGGFLVMLARISPHAWLRRPAILFIECVQ 61 MGGFS + F+++ +GWT+VL+ALAF+LG GF VML RI+ W+RR A +++ +Q Sbjct: 1 MGGFSLNHLVFLLEGVGWTVVLTALAFLLGSLAGFGVMLLRIARARWVRRLAFAYVQVIQ 60 Query: 62 GIPLLILLFIVYFGLSVYGLVLPALVAAGLAMMIYTSAYLGDIWRGCVEAMPRPQWEASE 121 G+PLLILLF VYFGL V G+ L LVAA +++M+Y SA+LG+IWRGCVEA+PR Q EA+E Sbjct: 61 GLPLLILLFCVYFGLGVIGVELSPLVAAAISLMVYCSAFLGEIWRGCVEAVPRTQGEAAE 120 Query: 122 CLSLTRWQTLRLVIIPQATRLSLPPTIGFLVQLIKMTSLASVIGFVELTRAGQIINNSIF 181 CL+L+RWQ L VI+PQA R+++PPT+GF VQ++K TSLASV+GFVELTRA Q+INNSIF Sbjct: 121 CLALSRWQALVDVILPQAARIAVPPTVGFFVQVLKSTSLASVVGFVELTRASQLINNSIF 180 Query: 182 QPFLVFLLVGSFYFLLCYPLSRWSASMERKLNVSHR 217 QPFLVF L G+ YF LCYPLSRWS +ERKL+V R Sbjct: 181 QPFLVFGLAGALYFALCYPLSRWSRRLERKLHVGRR 216 >ref|YP_001525533.1| amino acid ABC transporter permease [Azorhizobium caulinodans ORS 571] dbj|BAF88615.1| amino acid ABC transporter, permease protein [Azorhizobium caulinodans ORS 571] Length = 219 Score = 261 bits (668), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 126/214 (58%), Positives = 163/214 (76%), Gaps = 2/214 (0%) Query: 5 FSWTYFFFMVQSIGWTLVLSALAFVLGGAGGFLVMLARISPHAWLRRPAILFIECVQGIP 64 F F F+++S+ WTLVL+A+A LGG G + LAR+SP LR +I+ +QG P Sbjct: 6 FGLNDFIFLLESLRWTLVLTAIALTLGGIAGLFIALARVSPLMPLRLATAAYIQIIQGSP 65 Query: 65 LLILLFIVYFGLSVYGLVLPALVAAGLAMMIYTSAYLGDIWRGCVEAMPRPQWEASECLS 124 +L++LF+ Y+GLS+ G LPALVAA ++M IY S YLGDIWRGC+EA+P+PQWEASECL Sbjct: 66 VLMILFLSYYGLSLIGFQLPALVAASISMSIYVSGYLGDIWRGCIEAVPKPQWEASECLG 125 Query: 125 LTRWQTLRLVIIPQATRLSLPPTIGFLVQLIKMTSLASVIGFVELTRAGQIINNSIFQPF 184 +TR Q R +I+PQA R++LPPT GF VQ++K TS+ S+IGFVEL+RAGQ+INNS FQPF Sbjct: 126 MTRVQQFRHIILPQALRIALPPTTGFAVQVVKNTSITSIIGFVELSRAGQLINNSTFQPF 185 Query: 185 LVFLLVGSFYFLLCYPLSRWSASMERKLNV--SH 216 VFL V + YF++CYPLSR S +ERKLNV SH Sbjct: 186 RVFLTVAAIYFVICYPLSRLSGWLERKLNVGSSH 219 >ref|YP_003777259.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65351.1| ABC-type amino acid transport system, permease protein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 124/216 (57%), Positives = 165/216 (76%) Query: 2 MGGFSWTYFFFMVQSIGWTLVLSALAFVLGGAGGFLVMLARISPHAWLRRPAILFIECVQ 61 M FS+ + +++Q+ WT+VLS +AFV GG GF++ L R+SP+A LR A +I+ VQ Sbjct: 1 MNAFSFLHVEYLLQAAVWTVVLSLVAFVFGGVAGFVIALWRVSPNAVLRGIASGYIQVVQ 60 Query: 62 GIPLLILLFIVYFGLSVYGLVLPALVAAGLAMMIYTSAYLGDIWRGCVEAMPRPQWEASE 121 GIPLL++LF+ YFGL++ G L LVAAG++ IY +A+LG+IWRGC++A+P+ QWEASE Sbjct: 61 GIPLLVILFVAYFGLAIAGFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASE 120 Query: 122 CLSLTRWQTLRLVIIPQATRLSLPPTIGFLVQLIKMTSLASVIGFVELTRAGQIINNSIF 181 CL R++ L VI+PQA +++ PPT+GF+VQ++K TSLASVIGFV+L+RAGQIINNS F Sbjct: 121 CLGFNRFEQLTKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTF 180 Query: 182 QPFLVFLLVGSFYFLLCYPLSRWSASMERKLNVSHR 217 QPF VF V YF LC+PLS S ERKLNVSHR Sbjct: 181 QPFTVFGCVALIYFCLCFPLSALSKHFERKLNVSHR 216 >ref|YP_003774920.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ63012.1| ABC-type amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 122/217 (56%), Positives = 172/217 (79%), Gaps = 1/217 (0%) Query: 1 MMGGFSWTYFFFMVQSIGWTLVLSALAFVLGGAGGFLVMLARISPHAWLRRPAILFIECV 60 M+ FS+ F F++++ WTL+LSALAF+ GG GF+V L R S A LR + ++I+ + Sbjct: 1 MLAEFSFDNFVFLLEAARWTLLLSALAFLGGGIAGFIVALMRTSHLAPLRLLSAVYIQII 60 Query: 61 QGIPLLILLFIVYFGLSVYGLVLPALVAAGLAMMIYTSAYLGDIWRGCVEAMPRPQWEAS 120 QG P+LILLF+ ++GL+++G LP +VAA +AM IY+SAYLG+IWRGC+EA+P PQWEAS Sbjct: 61 QGTPVLILLFLSFYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEAS 120 Query: 121 ECLSLTRWQTLRLVIIPQATRLSLPPTIGFLVQLIKMTSLASVIGFVELTRAGQIINNSI 180 L++TRWQ LR VI+PQA R+SLPPT+GFLVQ++K TS+AS+IG VEL +AG++++N+ Sbjct: 121 TALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNAT 180 Query: 181 FQPFLVFLLVGSFYFLLCYPLSRWSASMERKLNVSHR 217 FQPFLVF +V YF+ CYPLSR++ ++ERK + +HR Sbjct: 181 FQPFLVFPIVAGIYFVFCYPLSRFAFALERKYH-AHR 216 >ref|YP_001417339.1| polar amino acid ABC transporter inner membrane subunit [Xanthobacter autotrophicus Py2] gb|ABS67682.1| polar amino acid ABC transporter, inner membrane subunit [Xanthobacter autotrophicus Py2] Length = 219 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 121/213 (56%), Positives = 165/213 (77%) Query: 5 FSWTYFFFMVQSIGWTLVLSALAFVLGGAGGFLVMLARISPHAWLRRPAILFIECVQGIP 64 F F+F+++S+ WTL L+ LA V GG GFLV L R + + LR A ++I+ VQGIP Sbjct: 6 FGLNEFYFLLESLQWTLALTGLAMVGGGIAGFLVALMRTARTSALRIAAGVYIQVVQGIP 65 Query: 65 LLILLFIVYFGLSVYGLVLPALVAAGLAMMIYTSAYLGDIWRGCVEAMPRPQWEASECLS 124 +L++LF+ Y+GLS+ G LPA+VAAGL+M IY S YLG+IWRGC++A+P+PQWE+ E L+ Sbjct: 66 VLMILFLSYYGLSLAGYQLPAIVAAGLSMSIYASGYLGEIWRGCIQAVPKPQWESGESLA 125 Query: 125 LTRWQTLRLVIIPQATRLSLPPTIGFLVQLIKMTSLASVIGFVELTRAGQIINNSIFQPF 184 LT Q +I+PQA R+SLPPT+GFLVQL+K TS+A++IGFVELTRAGQ+INN+ FQPF Sbjct: 126 LTIPQQYLYIILPQAIRISLPPTVGFLVQLVKNTSIAALIGFVELTRAGQLINNATFQPF 185 Query: 185 LVFLLVGSFYFLLCYPLSRWSASMERKLNVSHR 217 VFL V + YF++CYP+S+ S +ER+L+V R Sbjct: 186 RVFLTVAALYFVICYPMSQLSRWLERRLHVGSR 218 >ref|YP_003962780.1| polar amino acid ABC transporter inner membrane protein [Ketogulonicigenium vulgare Y25] gb|ADO41480.1| polar amino acid ABC transporter, inner membrane subunit [Ketogulonicigenium vulgare Y25] gb|AEM42334.1| Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family protein [Ketogulonigenium vulgarum WSH-001] Length = 216 Score = 249 bits (635), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 124/216 (57%), Positives = 164/216 (75%) Query: 2 MGGFSWTYFFFMVQSIGWTLVLSALAFVLGGAGGFLVMLARISPHAWLRRPAILFIECVQ 61 M F +F +++ + WT++LSALA LG GF+VML RIS WL R + +++ +Q Sbjct: 1 MQTFGTGHFIYLLNGLWWTIILSALAMSLGSIAGFIVMLGRISRRKWLVRLSGTWVQIIQ 60 Query: 62 GIPLLILLFIVYFGLSVYGLVLPALVAAGLAMMIYTSAYLGDIWRGCVEAMPRPQWEASE 121 G PLLI +FI+YFGL V G+ +PAL AA +A MIY SAYLG+IWRGCV+++ + Q+EA+E Sbjct: 61 GTPLLIQMFIIYFGLGVVGISVPALAAAAIATMIYASAYLGEIWRGCVQSIAKTQFEAAE 120 Query: 122 CLSLTRWQTLRLVIIPQATRLSLPPTIGFLVQLIKMTSLASVIGFVELTRAGQIINNSIF 181 + LTRWQ LR VI+PQA R++ PPT+GF VQLIK TSLASV+GF+ELTRA Q+INNS+F Sbjct: 121 SMGLTRWQALRDVILPQAMRIATPPTVGFTVQLIKNTSLASVVGFLELTRAAQVINNSLF 180 Query: 182 QPFLVFLLVGSFYFLLCYPLSRWSASMERKLNVSHR 217 +PFLVF + + YF +CYPLS WS ++ERKLNV R Sbjct: 181 EPFLVFGIAAALYFAVCYPLSLWSRNLERKLNVGRR 216 >ref|YP_841321.1| ABC transporter permease [Ralstonia eutropha H16] emb|CAJ96591.1| ABC-type transporter, permease component: PAAT family [Ralstonia eutropha H16] Length = 216 Score = 248 bits (634), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 124/216 (57%), Positives = 161/216 (74%) Query: 1 MMGGFSWTYFFFMVQSIGWTLVLSALAFVLGGAGGFLVMLARISPHAWLRRPAILFIECV 60 M+ FSW + ++ + WTL ++ LAFV G GFLV LAR S LR + +I+ V Sbjct: 1 MITEFSWNHLEILLLAARWTLWVTLLAFVGGTLAGFLVALARTSRSPMLRLASTAYIQVV 60 Query: 61 QGIPLLILLFIVYFGLSVYGLVLPALVAAGLAMMIYTSAYLGDIWRGCVEAMPRPQWEAS 120 QG P+LI+LF+ Y+GLSV GL L +VAA LAM IY SAYLG+IWRGC+EA+P+ QWEAS Sbjct: 61 QGTPVLIVLFLSYYGLSVLGLKLSPMVAAMLAMSIYASAYLGEIWRGCIEAVPQGQWEAS 120 Query: 121 ECLSLTRWQTLRLVIIPQATRLSLPPTIGFLVQLIKMTSLASVIGFVELTRAGQIINNSI 180 E L+LTRWQ LR V++PQA RL+LPPT+GF VQL+K TS+ S+IG +ELTRAGQ+INN+ Sbjct: 121 EALALTRWQQLRYVVLPQAVRLALPPTVGFSVQLVKNTSITSIIGVIELTRAGQLINNAT 180 Query: 181 FQPFLVFLLVGSFYFLLCYPLSRWSASMERKLNVSH 216 FQPF VF++V YF LC+PLS + MER+L+V+ Sbjct: 181 FQPFAVFVVVALIYFALCFPLSAAARRMERRLHVNR 216 >ref|ZP_08528169.1| ABC transporter, membrane spanning protein (amino acid) [Agrobacterium sp. ATCC 31749] gb|EGL65032.1| ABC transporter, membrane spanning protein (amino acid) [Agrobacterium sp. ATCC 31749] Length = 219 Score = 247 bits (631), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 119/214 (55%), Positives = 164/214 (76%), Gaps = 1/214 (0%) Query: 5 FSWTYFFFMVQSIGWTLVLSALAFVLGGAGGFLVMLARISPHAWLRRPAILFIECVQGIP 64 F W F F++ ++ WT++L+ +A + GG GFL+ LAR S + LR A +I+ +QGIP Sbjct: 6 FGWNEFGFLLTALQWTVLLTIIALIGGGIVGFLIALARTSDNKLLRIAAGTYIQVIQGIP 65 Query: 65 LLILLFIVYFGLSVYGLVLPALVAAGLAMMIYTSAYLGDIWRGCVEAMPRPQWEASECLS 124 +L++LF+ Y+GLS+ GL LP L+AAG +M IYTS YL +IWRGC++A+P+ QWEASE L+ Sbjct: 66 VLMILFLSYYGLSLAGLELPPLIAAGASMTIYTSGYLAEIWRGCIQAVPKQQWEASESLA 125 Query: 125 LTRWQTLRLVIIPQATRLSLPPTIGFLVQLIKMTSLASVIGFVELTRAGQIINNSIFQPF 184 LTR Q R VI+PQA R+SLPPT+GF VQ++K TS+AS+IGFVEL RAGQ+INN+ FQPF Sbjct: 126 LTRAQQYRYVILPQAIRISLPPTVGFAVQVVKNTSIASIIGFVELARAGQLINNATFQPF 185 Query: 185 LVFLLVGSFYFLLCYPLSRWSASMERKLNV-SHR 217 VF+ V YF++CYPLS+ S +ER+L+ S+R Sbjct: 186 RVFVAVAVLYFIVCYPLSQLSRLLERRLHAGSNR 219 >ref|NP_355976.1| ABC transporter, membrane spanning protein (amino acid) [Agrobacterium tumefaciens str. C58] gb|AAK88761.1| ABC transporter, membrane spanning protein (amino acid) [Agrobacterium tumefaciens str. C58] Length = 219 Score = 245 bits (625), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 119/214 (55%), Positives = 163/214 (76%), Gaps = 1/214 (0%) Query: 5 FSWTYFFFMVQSIGWTLVLSALAFVLGGAGGFLVMLARISPHAWLRRPAILFIECVQGIP 64 F W F F++ ++ WT++L+ +A V GG GF + LAR S + LR A +I+ +QGIP Sbjct: 6 FGWNEFGFLLTALQWTVLLTIIALVGGGIVGFFIALARTSDNKLLRIAAGTYIQVIQGIP 65 Query: 65 LLILLFIVYFGLSVYGLVLPALVAAGLAMMIYTSAYLGDIWRGCVEAMPRPQWEASECLS 124 +L++LF+ Y+GLS+ GL LP L+AAG +M IYTS YL +IWRGC++A+P+ QWEASE L+ Sbjct: 66 VLMILFLSYYGLSLAGLELPPLIAAGASMTIYTSGYLAEIWRGCIQAVPKQQWEASESLA 125 Query: 125 LTRWQTLRLVIIPQATRLSLPPTIGFLVQLIKMTSLASVIGFVELTRAGQIINNSIFQPF 184 LTR Q R VI+PQA R+SLPPT+GF VQ++K TS+AS+IGFVEL RAGQ+INN+ FQPF Sbjct: 126 LTRAQQYRYVILPQAIRISLPPTVGFAVQVVKNTSIASIIGFVELARAGQLINNATFQPF 185 Query: 185 LVFLLVGSFYFLLCYPLSRWSASMERKLNV-SHR 217 VF+ V YF++CYPLS+ S +ER+L+ S+R Sbjct: 186 RVFVAVAVLYFIVCYPLSQLSRWLERRLHAGSNR 219