BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0311.p (267 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777978.1| amino acid ABC transporter periplasmic prote... 541 e-152 ref|YP_001768632.1| extracellular solute-binding protein [Methyl... 274 9e-72 gb|EFV84584.1| extracellular solute-binding protein, family 3 [A... 259 4e-67 gb|EGP48471.1| amino acid ABC transporter/signal transduction sy... 258 5e-67 ref|YP_003962782.1| extracellular solute-binding protein [Ketogu... 253 2e-65 ref|YP_982301.1| extracellular solute-binding protein [Polaromon... 249 2e-64 ref|YP_003773674.1| amino acid ABC transporter/signal transducti... 243 3e-62 ref|YP_001416502.1| extracellular solute-binding protein [Xantho... 226 3e-57 ref|YP_003693664.1| family 3 extracellular solute-binding protei... 226 4e-57 ref|YP_001526196.1| extracellular substrate-binding protein [Azo... 225 7e-57 >ref|YP_003777978.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ66070.1| ABC-type amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 541 bits (1394), Expect = e-152, Method: Compositional matrix adjust. Identities = 266/267 (99%), Positives = 266/267 (99%) Query: 1 MQHTPLRRAARTAIAALVLGLTAHAALADQLDDIKKAGKIRIATTSSTPLFGYSDEKLQL 60 MQHTPLRRAARTAIAALVLGLTAHAALADQLDDIKKAGKIRIATTSSTPLFGYSDEKLQL Sbjct: 1 MQHTPLRRAARTAIAALVLGLTAHAALADQLDDIKKAGKIRIATTSSTPLFGYSDEKLQL 60 Query: 61 AGSDVEAARLLAQDLGVQLDLIPVANAARVPTLQANRADIVVGSLSITPERLKVIDFSTP 120 AGSDVEAARLLAQDLGVQLDLIPVANAARVPTLQANRADIVVGSLSITPERLKVIDFSTP Sbjct: 61 AGSDVEAARLLAQDLGVQLDLIPVANAARVPTLQANRADIVVGSLSITPERLKVIDFSTP 120 Query: 121 YAVISLIIGAPKSMAIKDYADLNGKRIGVTRATPNDTLTTQNAKGAEIMRYEDDATLITS 180 YAVISLIIGAPKSM IKDYADLNGKRIGVTRATPNDTLTTQNAKGAEIMRYEDDATLITS Sbjct: 121 YAVISLIIGAPKSMVIKDYADLNGKRIGVTRATPNDTLTTQNAKGAEIMRYEDDATLITS 180 Query: 181 MVTGQVDVFSSTPSNLQEMQKKAPGKNLEMKFEQKAFDLGIAINKNQPRLKEWIDGWVKT 240 MVTGQVDVFSSTPSNLQEMQKKAPGKNLEMKFEQKAFDLGIAINKNQPRLKEWIDGWVKT Sbjct: 181 MVTGQVDVFSSTPSNLQEMQKKAPGKNLEMKFEQKAFDLGIAINKNQPRLKEWIDGWVKT 240 Query: 241 NMKNGKLNAIYKKYHGRDLPAAVQNPA 267 NMKNGKLNAIYKKYHGRDLPAAVQNPA Sbjct: 241 NMKNGKLNAIYKKYHGRDLPAAVQNPA 267 >ref|YP_001768632.1| extracellular solute-binding protein [Methylobacterium sp. 4-46] gb|ACA16198.1| extracellular solute-binding protein family 3 [Methylobacterium sp. 4-46] Length = 266 Score = 274 bits (701), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 127/234 (54%), Positives = 175/234 (74%) Query: 28 ADQLDDIKKAGKIRIATTSSTPLFGYSDEKLQLAGSDVEAARLLAQDLGVQLDLIPVANA 87 AD LD ++KA +IRIA P F + D+ LQ GSDVE A+L+AQDLG LDLI + NA Sbjct: 27 ADSLDAVRKAKRIRIAVAIGIPRFAFIDQNLQPTGSDVETAKLIAQDLGADLDLIQITNA 86 Query: 88 ARVPTLQANRADIVVGSLSITPERLKVIDFSTPYAVISLIIGAPKSMAIKDYADLNGKRI 147 ARVPT+Q +ADI+V SL++TPER KVIDF+ PYA +++++ ++A+K Y D+ GKRI Sbjct: 87 ARVPTIQTRKADILVASLAVTPERKKVIDFTVPYATLNIVVAGVPALAVKGYPDIVGKRI 146 Query: 148 GVTRATPNDTLTTQNAKGAEIMRYEDDATLITSMVTGQVDVFSSTPSNLQEMQKKAPGKN 207 GVTRAT ND L TQNAKGAEI+R+EDDATLIT+ V+GQVD+ S+ + + M +K + Sbjct: 147 GVTRATVNDMLVTQNAKGAEIVRFEDDATLITAAVSGQVDLVSTQEAVVAVMNEKRADRP 206 Query: 208 LEMKFEQKAFDLGIAINKNQPRLKEWIDGWVKTNMKNGKLNAIYKKYHGRDLPA 261 E KF Q +LGIA+ + + RLK+W++ WV++NM +G+L A+++K+HGRDLPA Sbjct: 207 FETKFVQSELNLGIALPQGEDRLKDWLNDWVRSNMASGRLTALFRKFHGRDLPA 260 >gb|EFV84584.1| extracellular solute-binding protein, family 3 [Achromobacter xylosoxidans C54] Length = 272 Score = 259 bits (661), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 134/261 (51%), Positives = 181/261 (69%), Gaps = 2/261 (0%) Query: 5 PLRRAARTAIAALVLGL-TAHAALADQLDDIKKAGKIRIATTSSTPLFGYSDEKLQLAGS 63 P R A A AL+ GL + AA ADQLDDI KAGK+R+A P +G D L GS Sbjct: 7 PPRLRAAFAGLALIGGLAVSGAAHADQLDDIMKAGKLRVAIDLGVPPYGMKDAALNPTGS 66 Query: 64 DVEAARLLAQDLGVQLDLIPVANAARVPTLQANRADIVVGSLSITPERLKVIDFSTPYAV 123 DVE ARLLA+ LGV L+++P A RVP LQ +ADIV+ S+S+TPER KVIDFSTPYA Sbjct: 67 DVETARLLAKGLGVTLEIVPTTGANRVPFLQTGKADIVISSMSVTPERQKVIDFSTPYAA 126 Query: 124 ISLIIGAPKSMAIKDYADLNGKRIGVTRATPNDTLTTQNA-KGAEIMRYEDDATLITSMV 182 I ++GAP+ M + ADL+ K++ TR T NDT T+ A K A+I+R++DDAT IT++V Sbjct: 127 ILAVVGAPRDMKLTSAADLSSKKVIATRGTTNDTELTRIAPKDAQIIRFDDDATSITAVV 186 Query: 183 TGQVDVFSSTPSNLQEMQKKAPGKNLEMKFEQKAFDLGIAINKNQPRLKEWIDGWVKTNM 242 +GQ D+F++ P+ L+ + +KAP K +E KF + L I + KN+P LK+ +DGWV+ N+ Sbjct: 187 SGQADIFATAPALLRTINEKAPAKQMESKFVMRLNMLAIGLRKNEPALKDKLDGWVRANL 246 Query: 243 KNGKLNAIYKKYHGRDLPAAV 263 K+G+LN IYK++HG DLP V Sbjct: 247 KSGELNTIYKQFHGVDLPQEV 267 >gb|EGP48471.1| amino acid ABC transporter/signal transduction system periplasmic binding protein [Achromobacter xylosoxidans AXX-A] Length = 272 Score = 258 bits (660), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 135/261 (51%), Positives = 181/261 (69%), Gaps = 3/261 (1%) Query: 5 PLRRAARTAIAALVLGLT-AHAALADQLDDIKKAGKIRIATTSSTPLFGYSDEKLQLAGS 63 P RAA +A L+ GL + AA ADQLDDI KA K+R+A P +G D L GS Sbjct: 8 PRLRAAFVGLA-LIGGLALSGAAHADQLDDIMKAKKLRVAIDLGVPPYGMKDAALNPTGS 66 Query: 64 DVEAARLLAQDLGVQLDLIPVANAARVPTLQANRADIVVGSLSITPERLKVIDFSTPYAV 123 DVE ARLLA+ LGV+L+++P A RVP LQ +ADIV+ S+S+TPER KVIDFSTPYA Sbjct: 67 DVETARLLAKGLGVELEIVPTTGANRVPFLQTGKADIVISSMSVTPERQKVIDFSTPYAA 126 Query: 124 ISLIIGAPKSMAIKDYADLNGKRIGVTRATPNDT-LTTQNAKGAEIMRYEDDATLITSMV 182 I ++GAPK M + ADL+ K++ TR T NDT LT K A+I+R++DDAT IT++V Sbjct: 127 ILAVVGAPKGMKLISAADLSNKKVIATRGTTNDTELTKIAPKDAQIIRFDDDATSITAVV 186 Query: 183 TGQVDVFSSTPSNLQEMQKKAPGKNLEMKFEQKAFDLGIAINKNQPRLKEWIDGWVKTNM 242 +GQ D+F++ P+ L+ + +KAP K +E KF + L I + KN+P LK+ +DGWV+ N+ Sbjct: 187 SGQADIFATAPALLRTINEKAPSKQMESKFVMRLNMLAIGLRKNEPALKDKLDGWVRANL 246 Query: 243 KNGKLNAIYKKYHGRDLPAAV 263 KNG+LN IYK++HG DLP V Sbjct: 247 KNGELNTIYKQFHGVDLPQEV 267 >ref|YP_003962782.1| extracellular solute-binding protein [Ketogulonicigenium vulgare Y25] gb|ADO41482.1| extracellular solute-binding protein [Ketogulonicigenium vulgare Y25] gb|AEM42336.1| Amino acid ABC transporter [Ketogulonigenium vulgarum WSH-001] Length = 263 Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 124/252 (49%), Positives = 170/252 (67%), Gaps = 2/252 (0%) Query: 11 RTAIAALVLGLTAHAAL--ADQLDDIKKAGKIRIATTSSTPLFGYSDEKLQLAGSDVEAA 68 R A+ A+ G++ A+ A L +I++ G IRIA P + Y D +Q AGSDVE A Sbjct: 6 RIALLAMTAGMSLGLAMPAAADLAEIRERGVIRIAVAMGIPQYSYIDSNMQPAGSDVETA 65 Query: 69 RLLAQDLGVQLDLIPVANAARVPTLQANRADIVVGSLSITPERLKVIDFSTPYAVISLII 128 R+LA+DLGV L+L+ + NAARVPT+Q ++AD+VV +L IT ER + IDFS PYA ++L++ Sbjct: 66 RMLAEDLGVALELVEITNAARVPTIQTDKADLVVSALGITDERRQAIDFSVPYATLALVV 125 Query: 129 GAPKSMAIKDYADLNGKRIGVTRATPNDTLTTQNAKGAEIMRYEDDATLITSMVTGQVDV 188 AP + I DYADL GKRI +TRAT ND T N GAEI+R+EDDATLITS+++GQVD+ Sbjct: 126 AAPADIDISDYADLTGKRIALTRATTNDQDITANTTGAEILRFEDDATLITSVISGQVDI 185 Query: 189 FSSTPSNLQEMQKKAPGKNLEMKFEQKAFDLGIAINKNQPRLKEWIDGWVKTNMKNGKLN 248 SS + + + ++ G LE+KF Q+ +LGI + K P L W+D WV TN NG+L Sbjct: 186 ISSQSAVIGGINERRRGGPLEIKFIQRETNLGIGLAKGNPELLAWVDEWVVTNFDNGRLR 245 Query: 249 AIYKKYHGRDLP 260 ++ Y RDLP Sbjct: 246 EVFTTYQHRDLP 257 >ref|YP_982301.1| extracellular solute-binding protein [Polaromonas naphthalenivorans CJ2] gb|ABM37380.1| amino acid ABC transporter substrate-binding protein, PAAT family [Polaromonas naphthalenivorans CJ2] Length = 255 Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 117/229 (51%), Positives = 165/229 (72%) Query: 28 ADQLDDIKKAGKIRIATTSSTPLFGYSDEKLQLAGSDVEAARLLAQDLGVQLDLIPVANA 87 AD L DI++A KIRIA + +P +G+ D+ L+ GSDVE A+LLAQDLGV L+++ + Sbjct: 26 ADLLKDIREAKKIRIAVDTGSPPYGFVDDALKPVGSDVETAQLLAQDLGVALEMVQTTSP 85 Query: 88 ARVPTLQANRADIVVGSLSITPERLKVIDFSTPYAVISLIIGAPKSMAIKDYADLNGKRI 147 R+P LQ +ADIVV SLS+TPER KV+DFSTPYA I ++ PK+++IK + DL GKR+ Sbjct: 86 NRIPFLQTGKADIVVASLSVTPEREKVVDFSTPYAQILAVVAGPKAVSIKGFDDLQGKRV 145 Query: 148 GVTRATPNDTLTTQNAKGAEIMRYEDDATLITSMVTGQVDVFSSTPSNLQEMQKKAPGKN 207 TR + ND + T AKGA+++RY+DDATL+T+ V+GQ D+ +++P+ + + K+P K+ Sbjct: 146 ATTRGSNNDRVATLGAKGAQMVRYDDDATLVTAAVSGQADIIATSPAIVNAVLGKSPQKD 205 Query: 208 LEMKFEQKAFDLGIAINKNQPRLKEWIDGWVKTNMKNGKLNAIYKKYHG 256 L KF + LGI + KN+P LK W++ WV N +NGKL AIYKKYHG Sbjct: 206 LVTKFVMQTVPLGIGMRKNEPELKAWLNDWVTKNTQNGKLTAIYKKYHG 254 >ref|YP_003773674.1| amino acid ABC transporter/signal transduction system periplasmic binding protein [Herbaspirillum seropedicae SmR1] gb|ADJ61766.1| ABC-type amino acid transport/signal transduction systems, periplasmic binding protein [Herbaspirillum seropedicae SmR1] Length = 269 Score = 243 bits (619), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 119/241 (49%), Positives = 167/241 (69%), Gaps = 1/241 (0%) Query: 28 ADQLDDIKKAGKIRIATTSSTPLFGYSDEKLQLAGSDVEAARLLAQDLGVQLDLIPVANA 87 ADQLD I A K+R+A + P + D+KL+L GSDVE A+ +A+D G++L+++P Sbjct: 28 ADQLDTILAAKKLRVAIDLAVPPYSMKDDKLRLIGSDVETAQRMAKDFGLELEVVPTTLT 87 Query: 88 ARVPTLQANRADIVVGSLSITPERLKVIDFSTPYAVISLIIGAPKSMAIKDYADLNGKRI 147 RVP LQ N+ADIV+ + SITPER KVIDFS PYA I +++GAP+SM I ADL GK+I Sbjct: 88 NRVPYLQTNKADIVISAFSITPERAKVIDFSVPYAPILVVVGAPRSMKITSPADLAGKKI 147 Query: 148 GVTRATPND-TLTTQNAKGAEIMRYEDDATLITSMVTGQVDVFSSTPSNLQEMQKKAPGK 206 TR T ND LT A I R++DDAT +T+MV+GQ D+++++P L+ + +K P + Sbjct: 148 IATRGTTNDQELTKIAPSSATITRFDDDATSMTAMVSGQADIWATSPMLLKVVNQKNPSR 207 Query: 207 NLEMKFEQKAFDLGIAINKNQPRLKEWIDGWVKTNMKNGKLNAIYKKYHGRDLPAAVQNP 266 ++E K KA L + + K +PRLKE IDGW++TN+ NG+LN IYKKYH +LP + +P Sbjct: 208 DIESKLTLKANLLAVGLRKGEPRLKEKIDGWIRTNLSNGELNTIYKKYHEAELPPEILHP 267 Query: 267 A 267 A Sbjct: 268 A 268 >ref|YP_001416502.1| extracellular solute-binding protein [Xanthobacter autotrophicus Py2] gb|ABS66845.1| extracellular solute-binding protein family 3 [Xanthobacter autotrophicus Py2] Length = 266 Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 113/231 (48%), Positives = 157/231 (67%), Gaps = 4/231 (1%) Query: 34 IKKAGKIRIATTSSTPLFGYSDEKLQLAGSDVEAARLLAQDLGVQLDLIPVANAARVPTL 93 IK+ GK+ +A S P +G D+K + GSDVE A+LLA+DLGV L+++PV+ A RVP+L Sbjct: 30 IKQRGKLIVAIDVSHPPYGMLDDKAKETGSDVETAQLLAKDLGVALEVVPVSGANRVPSL 89 Query: 94 QANRADIVVGSLSITPERLKVIDFSTPYAVISLIIGAPKSMAIKDYADLNGKRIGVTRAT 153 AN+ D+V+ S SITPER KV+D+S PY VI +++ APK+MAIK ADL GK I V R T Sbjct: 90 LANKVDVVIASFSITPERKKVVDYSLPYGVIPVVVSAPKAMAIKSPADLAGKSIAVARGT 149 Query: 154 PND---TLTTQNAK-GAEIMRYEDDATLITSMVTGQVDVFSSTPSNLQEMQKKAPGKNLE 209 D + T ++AK A I+RYED+AT +T++ TGQ D+ ++ S + ++ PGK LE Sbjct: 150 TADIELSRTIKDAKVAANIVRYEDEATAVTALATGQQDLLAAALSTANTVAEQNPGKTLE 209 Query: 210 MKFEQKAFDLGIAINKNQPRLKEWIDGWVKTNMKNGKLNAIYKKYHGRDLP 260 +K E A+ + + + K P LK ++D WVK N+ NGKLN IYKKY LP Sbjct: 210 VKLEMAAYPMAVGLRKTDPELKAYVDEWVKANLANGKLNDIYKKYFHLSLP 260 >ref|YP_003693664.1| family 3 extracellular solute-binding protein [Starkeya novella DSM 506] gb|ADH89045.1| extracellular solute-binding protein family 3 [Starkeya novella DSM 506] Length = 266 Score = 226 bits (575), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 112/240 (46%), Positives = 157/240 (65%), Gaps = 3/240 (1%) Query: 25 AALADQLDDIKKAGKIRIATTSSTPLFGYSDEKLQLAGSDVEAARLLAQDLGVQLDLIPV 84 AA AD LDDI A KIRI+T + P G D ++ GSDVE A LLA+DLG+ ++ + Sbjct: 21 AAKADLLDDIMAAKKIRISTDLAIPPSGMMDSSMKPVGSDVETAELLAKDLGLTIEWVQT 80 Query: 85 ANAARVPTLQANRADIVVGSLSITPERLKVIDFSTPYAVISLIIGAPKSMAIKDYADLNG 144 A R+P LQ N+AD+V+ +LS+TPER KVIDF+ PYA + ++G K++ +KD+ L G Sbjct: 81 TGATRIPNLQTNKADVVISTLSVTPERAKVIDFTDPYAALESVVGGLKTIEVKDWDGLKG 140 Query: 145 KRIGVTRATPNDTLTTQNAK---GAEIMRYEDDATLITSMVTGQVDVFSSTPSNLQEMQK 201 K I V+R T DT T AK G + RY+DDAT++T+ VTGQ D +++ + + ++ Sbjct: 141 KTIAVSRGTTQDTALTNRAKEGGGFNVARYDDDATMVTAAVTGQADFIATSATIVNQIGV 200 Query: 202 KAPGKNLEMKFEQKAFDLGIAINKNQPRLKEWIDGWVKTNMKNGKLNAIYKKYHGRDLPA 261 K P + E K F+L + + K +PRLK ++ W+ N+KNGKLNAIYKKYHG DLPA Sbjct: 201 KNPARAFEPKVLITTFNLAMGVKKGEPRLKAKLNEWIAENIKNGKLNAIYKKYHGADLPA 260 >ref|YP_001526196.1| extracellular substrate-binding protein [Azorhizobium caulinodans ORS 571] dbj|BAF89278.1| extracellular solute-binding protein [Azorhizobium caulinodans ORS 571] Length = 267 Score = 225 bits (573), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 113/242 (46%), Positives = 160/242 (66%) Query: 19 LGLTAHAALADQLDDIKKAGKIRIATTSSTPLFGYSDEKLQLAGSDVEAARLLAQDLGVQ 78 +G A A AD LD+IKK GKI IA +P FG +D +Q GSDVE+A+L+A DLG Sbjct: 21 MGSFALPARADTLDEIKKRGKILIAVDLGSPPFGMNDANMQPTGSDVESAKLIAADLGFP 80 Query: 79 LDLIPVANAARVPTLQANRADIVVGSLSITPERLKVIDFSTPYAVISLIIGAPKSMAIKD 138 L+++ V + R+P L +AD+V+ S S+T ER KVIDFS PY VI +++ APKS+A+KD Sbjct: 81 LEIVQVTSPNRIPFLLTGKADLVMASFSVTDERKKVIDFSDPYGVIQIVVAAPKSVAVKD 140 Query: 139 YADLNGKRIGVTRATPNDTLTTQNAKGAEIMRYEDDATLITSMVTGQVDVFSSTPSNLQE 198 DL GKR+G TR + ND T A+GAE++RY+DDATLIT++V+GQV++ +S+P + Sbjct: 141 LKDLVGKRLGTTRGSSNDKEATTQAQGAEMVRYDDDATLITALVSGQVNIMASSPQVMAA 200 Query: 199 MQKKAPGKNLEMKFEQKAFDLGIAINKNQPRLKEWIDGWVKTNMKNGKLNAIYKKYHGRD 258 + + P LE+K K + K L+E ++ + TN+KNGKLN IY +Y+G Sbjct: 201 VNARRPNDPLEIKLVLKTNPYAAGLRKGDDALREAVNKVIATNLKNGKLNEIYTRYNGTS 260 Query: 259 LP 260 LP Sbjct: 261 LP 262