BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0242.p (228 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777916.1| GntR family transcription regulator protein ... 454 e-126 ref|YP_004753667.1| regulatory protein GntR [Collimonas fungivor... 314 8e-84 ref|YP_585586.1| GntR family transcriptional regulator [Cupriavi... 273 1e-71 ref|YP_004687314.1| GntR family transcriptional regulator [Cupri... 273 1e-71 ref|YP_728017.1| GntR family transcriptional regulator [Ralstoni... 272 3e-71 ref|YP_297483.1| GntR family transcriptional regulator [Ralstoni... 270 2e-70 ref|YP_002007027.1| GntR family transcriptional regulator [Cupri... 268 4e-70 ref|YP_003979702.1| GntR family transcriptional regulator [Achro... 266 2e-69 gb|EFV86593.1| gntR-family transcriptional regulator [Achromobac... 265 5e-69 ref|ZP_06688265.1| GntR family transcriptional regulator [Achrom... 263 2e-68 >ref|YP_003777916.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ66008.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 228 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 227/228 (99%), Positives = 228/228 (100%) Query: 1 MTDSAPAPDSSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDK 60 MTDSAPAPDSSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDK Sbjct: 1 MTDSAPAPDSSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDK 60 Query: 61 LVDLIPDKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQA 120 LVDLIPDKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQA Sbjct: 61 LVDLIPDKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQA 120 Query: 121 VSDDNMQVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEH 180 VSDDNMQVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEH Sbjct: 121 VSDDNMQVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEH 180 Query: 181 RAFIAAARAGDTERAIELMEHHLLHVEQALAFEPKAGPRKDLLRELLS 228 RAFIAAARAGDTERA+ELMEHHLLHVEQALAFEPKAGPRKDLLRELLS Sbjct: 181 RAFIAAARAGDTERAMELMEHHLLHVEQALAFEPKAGPRKDLLRELLS 228 >ref|YP_004753667.1| regulatory protein GntR [Collimonas fungivorans Ter331] gb|AEK62844.1| regulatory protein GntR, HTH:GntR, C-terminal [Collimonas fungivorans Ter331] Length = 231 Score = 314 bits (804), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 156/216 (72%), Positives = 181/216 (83%), Gaps = 1/216 (0%) Query: 14 IASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDLIPDKGAFVS 73 IA+DI IA QRLPPG KL EEALAR+Y VSRTKIRAALVMLAKDKL+DL+PDKGAFVS Sbjct: 16 IAADITTAIAEQRLPPGTKLREEALARLYSVSRTKIRAALVMLAKDKLIDLVPDKGAFVS 75 Query: 74 KPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQAVSDDNMQVRSTLL 133 +PT EE R IFFVRR LE+A+VREFVA+AT DY LE HL+ ER+A+S +N QVRS LL Sbjct: 76 RPTEEEARQIFFVRRVLETALVREFVAKATAADYELLEQHLQQEREALSKENPQVRSRLL 135 Query: 134 SDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHRAFIAAARAGDTE 193 SDFHILLAR VGN VLTD+L KLAGRS+LITMLYQSTRDAACSS+EH F+ AA+AGDTE Sbjct: 136 SDFHILLARTVGNQVLTDVLTKLAGRSSLITMLYQSTRDAACSSDEHVEFLQAAKAGDTE 195 Query: 194 RAIELMEHHLLHVEQALAFE-PKAGPRKDLLRELLS 228 +A++LM+HHL HVE AL FE P G +KD ++ LL+ Sbjct: 196 KAVQLMQHHLHHVESALQFEIPPPGGKKDFVKALLA 231 >ref|YP_585586.1| GntR family transcriptional regulator [Cupriavidus metallidurans CH34] gb|ABF10317.1| transcriptional regulator, GntR-family [Cupriavidus metallidurans CH34] Length = 230 Score = 273 bits (698), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 137/224 (61%), Positives = 174/224 (77%), Gaps = 3/224 (1%) Query: 8 PD-SSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDLIP 66 PD +++AIA DI A I + RLPPG KL EEALA VY+VSRTK+RAAL+ML+KDK++ ++P Sbjct: 7 PDMTAEAIADDIVAAIVSHRLPPGTKLREEALASVYRVSRTKVRAALLMLSKDKVIQIVP 66 Query: 67 DKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQAVSDDNM 126 DKGAFV+KP+ EE R +F VRR LE+A+ REFVA+ATP DY R+E HL ER+++ ++ Sbjct: 67 DKGAFVAKPSAEEAREVFTVRRILEAALAREFVAKATPADYKRIEKHLTAERKSLGGNDA 126 Query: 127 QVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHRAFIAA 186 Q R+ LL DFHI+LA +VGN V+T I+ +L+ RSA+ITMLYQS RDA CSS+EHRAFI A Sbjct: 127 QTRTRLLGDFHIVLAEVVGNSVMTGIMRELSMRSAVITMLYQSRRDATCSSDEHRAFIDA 186 Query: 187 ARAGDTERAIELMEHHLLHVEQALAFE--PKAGPRKDLLRELLS 228 ARAGD E A++LM HL HVE AL FE P A KDL+ LL+ Sbjct: 187 ARAGDAELAVKLMVEHLAHVEAALHFEEVPAAARGKDLVAALLA 230 >ref|YP_004687314.1| GntR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI78833.1| transcriptional regulator GntR family [Cupriavidus necator N-1] Length = 230 Score = 273 bits (698), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 138/224 (61%), Positives = 176/224 (78%), Gaps = 3/224 (1%) Query: 8 PD-SSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDLIP 66 PD +++AIA DI A I + RLPPG KL EEALA VY+VSRTK+RAAL+ML+KDK++ ++P Sbjct: 7 PDMTAEAIAEDIVAAIVSHRLPPGTKLREEALASVYRVSRTKVRAALLMLSKDKVIQIVP 66 Query: 67 DKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQAVSDDNM 126 DKGAFV+KP+ EE R +F VRR LE+A+ REFVA+ATP DY R++ HL ER+A++ ++ Sbjct: 67 DKGAFVAKPSAEEAREVFAVRRILEAALAREFVAKATPADYKRIDKHLAAERKALTGNDA 126 Query: 127 QVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHRAFIAA 186 QVR+ LL DFHI+LA +VGN VLT+++ +L+ RSA+ITMLYQS RDAACSS+EHR FI A Sbjct: 127 QVRTRLLGDFHIVLAEVVGNGVLTEMMRELSTRSAVITMLYQSRRDAACSSDEHREFIEA 186 Query: 187 ARAGDTERAIELMEHHLLHVEQALAFEPKA--GPRKDLLRELLS 228 ARAGD ERA+ LM HL HVE AL FE A KDL+ LL+ Sbjct: 187 ARAGDVERAVALMVDHLGHVEGALHFEETAPVSRGKDLVTALLA 230 >ref|YP_728017.1| GntR family transcriptional regulator [Ralstonia eutropha H16] emb|CAJ94649.1| transcriptional regulator, GntR-family [Ralstonia eutropha H16] Length = 230 Score = 272 bits (695), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 138/224 (61%), Positives = 175/224 (78%), Gaps = 3/224 (1%) Query: 8 PD-SSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDLIP 66 PD +++AIA DI A I + RLPPG KL EEALA VY+VSRTK+RAAL+ML+KDK++ ++P Sbjct: 7 PDMTAEAIAEDIVAAIVSHRLPPGTKLREEALASVYRVSRTKVRAALLMLSKDKVIQIVP 66 Query: 67 DKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQAVSDDNM 126 DKGAFV+KP+ EE R +F VRR LE+A+ REFVA+ATP DY R++ HL ER+A+ ++ Sbjct: 67 DKGAFVAKPSAEEAREVFAVRRILEAALAREFVAKATPADYKRIDRHLAAERKALGGNDA 126 Query: 127 QVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHRAFIAA 186 QVR+ LL DFHI+LA +VGN VLT+++ +L+ RSA+ITMLYQS RDAACSS+EHR FI A Sbjct: 127 QVRTRLLGDFHIVLAEVVGNGVLTEMMRELSTRSAVITMLYQSRRDAACSSDEHREFIEA 186 Query: 187 ARAGDTERAIELMEHHLLHVEQALAFEPKA--GPRKDLLRELLS 228 ARAGD ERA+ LM HL HVE AL FE A KDL+ LL+ Sbjct: 187 ARAGDVERAVTLMVDHLGHVEGALHFEETAPVSRGKDLVTALLA 230 >ref|YP_297483.1| GntR family transcriptional regulator [Ralstonia eutropha JMP134] gb|AAZ62639.1| transcriptional regulator, GntR family [Ralstonia eutropha JMP134] Length = 230 Score = 270 bits (689), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 136/224 (60%), Positives = 173/224 (77%), Gaps = 3/224 (1%) Query: 8 PD-SSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDLIP 66 PD +++AIA DI A I + RLPPG KL EEALA VY+VSRTK+RAAL+ML+KDK++ ++P Sbjct: 7 PDMTAEAIADDIVAAIVSHRLPPGTKLREEALASVYRVSRTKVRAALLMLSKDKVIQIVP 66 Query: 67 DKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQAVSDDNM 126 DKGAFV+KP+ EE R +F VRR LE+A+ REFVA+A P DY R++ HL ER+++ + Sbjct: 67 DKGAFVAKPSAEEAREVFAVRRILEAALAREFVAKAKPADYKRIDKHLASERKSIEGVDA 126 Query: 127 QVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHRAFIAA 186 Q R+ LL DFHI+LA +VGN VLT+++ +L+ RSA+ITMLYQS RDAACSS+EHR FI A Sbjct: 127 QTRTRLLGDFHIVLAEVVGNSVLTEMMRELSARSAVITMLYQSRRDAACSSDEHREFIEA 186 Query: 187 ARAGDTERAIELMEHHLLHVEQALAFE--PKAGPRKDLLRELLS 228 ARAGD ERA+ LM HL HVE AL FE P A KDL+ LL+ Sbjct: 187 ARAGDVERAVALMVDHLSHVEAALHFEESPPAARGKDLVAALLA 230 >ref|YP_002007027.1| GntR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] emb|CAQ70966.1| putative TRANSCRIPTION REGULATOR, GntR family [Cupriavidus taiwanensis LMG 19424] Length = 230 Score = 268 bits (685), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 136/224 (60%), Positives = 175/224 (78%), Gaps = 3/224 (1%) Query: 8 PD-SSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDLIP 66 PD +++AIA DI A I + RLPPG KL EEALA VY+VSRTK+RAAL+ML+KDK++ ++P Sbjct: 7 PDMTAEAIADDIVAAIVSHRLPPGTKLREEALASVYRVSRTKVRAALLMLSKDKVIQIVP 66 Query: 67 DKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQAVSDDNM 126 DKGAFV+KP+ EE R +F VRR LE+A+ REFVA+AT DY R++ HL ER++++ ++ Sbjct: 67 DKGAFVAKPSAEEAREVFAVRRILEAALAREFVAKATAADYKRIDRHLAAERKSLAGNDA 126 Query: 127 QVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHRAFIAA 186 QVR+ LL DFHI+LA +VGN VLT+++ +L+ RSA+ITMLYQS RDAACSS+EHR FI A Sbjct: 127 QVRTRLLGDFHIVLAEVVGNGVLTEMMRELSARSAVITMLYQSRRDAACSSDEHREFIEA 186 Query: 187 ARAGDTERAIELMEHHLLHVEQALAFEPKA--GPRKDLLRELLS 228 ARAGD ERA+ LM HL HVE AL FE A KDL+ LL+ Sbjct: 187 ARAGDVERAVTLMVDHLGHVEGALHFEETAPVARGKDLVAALLA 230 >ref|YP_003979702.1| GntR family transcriptional regulator [Achromobacter xylosoxidans A8] gb|ADP16987.1| bacterial regulatory protein, GntR family protein 40 [Achromobacter xylosoxidans A8] Length = 228 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 136/224 (60%), Positives = 169/224 (75%), Gaps = 1/224 (0%) Query: 6 PAPD-SSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDL 64 P PD S+D IA +I+A I A +LPPG +L EEALA VYQVSRTKIRAAL+ML+KDKL+ + Sbjct: 5 PRPDPSADDIAKEISAAIVAHKLPPGTRLREEALAGVYQVSRTKIRAALLMLSKDKLIHI 64 Query: 65 IPDKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQAVSDD 124 +PDKGAFVSKP E R ++ VRR LE+A+ REFVARAT DY R++AHL ERQA++ Sbjct: 65 VPDKGAFVSKPDANEAREVYAVRRILEAALAREFVARATAADYRRIDAHLAAERQALAGG 124 Query: 125 NMQVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHRAFI 184 ++Q R+ LL FHILLA VGN VLT +L +L+ RSA+IT+LYQS+ DA+CSS+EH AFI Sbjct: 125 DVQERNRLLGHFHILLAETVGNSVLTGMLRELSARSAVITVLYQSSHDASCSSQEHHAFI 184 Query: 185 AAARAGDTERAIELMEHHLLHVEQALAFEPKAGPRKDLLRELLS 228 AARAGD ERA LM+ HL HV+ AL F+ DL+ LLS Sbjct: 185 EAARAGDAERACALMDAHLEHVQTALNFKNGGRTGGDLVSALLS 228 >gb|EFV86593.1| gntR-family transcriptional regulator [Achromobacter xylosoxidans C54] Length = 249 Score = 265 bits (676), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 136/228 (59%), Positives = 168/228 (73%) Query: 1 MTDSAPAPDSSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDK 60 MT + P S+D IA ++AA I A RLPPG +L EEALARVY+VSRTKIRAAL+ML+KDK Sbjct: 22 MTQAVPPDPSADDIAKEVAAAIVAHRLPPGTRLREEALARVYKVSRTKIRAALLMLSKDK 81 Query: 61 LVDLIPDKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQA 120 L++++PDKGAFVSKP E R ++ VRR LE+A+ REFV RAT DY R++AHL ER A Sbjct: 82 LINIVPDKGAFVSKPDANEAREVYAVRRILEAALAREFVTRATAADYRRIDAHLAEERAA 141 Query: 121 VSDDNMQVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEH 180 V ++Q R+ LL DFHILLA VGN VLT +L +L+ RSA+IT+LYQS+ DA+CSS EH Sbjct: 142 VESGDVQARNRLLGDFHILLAEAVGNSVLTGMLRELSARSAVITVLYQSSHDASCSSREH 201 Query: 181 RAFIAAARAGDTERAIELMEHHLLHVEQALAFEPKAGPRKDLLRELLS 228 AFI AARAGD +RA LM+ HL HV+ AL F DL+ LLS Sbjct: 202 HAFIEAARAGDVDRACALMDEHLEHVQTALDFSEGDRAGGDLVAALLS 249 >ref|ZP_06688265.1| GntR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gb|EFF74793.1| GntR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 254 Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 134/223 (60%), Positives = 170/223 (76%), Gaps = 1/223 (0%) Query: 7 APD-SSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDLI 65 +PD S+D IA ++AA I A +LPPG +L EEALARVY+VSRTKIRAAL+ML+KDKL++++ Sbjct: 32 SPDPSADDIAKEVAAAIVAHKLPPGTRLREEALARVYKVSRTKIRAALLMLSKDKLINIV 91 Query: 66 PDKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQAVSDDN 125 PDKGAFVSKP E R ++ VRR LE+A+ +EFVARAT DY R++AHL ER A+ + Sbjct: 92 PDKGAFVSKPDANEAREVYAVRRILEAALAKEFVARATAADYRRIDAHLAEERAALEAGD 151 Query: 126 MQVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHRAFIA 185 +Q R+ LL FHILLA VGN VLT +L +L+ RSA+IT+LYQS+ DA+CSS+EH AFI Sbjct: 152 VQKRNQLLGHFHILLAETVGNSVLTGMLRELSARSAVITVLYQSSHDASCSSQEHHAFIE 211 Query: 186 AARAGDTERAIELMEHHLLHVEQALAFEPKAGPRKDLLRELLS 228 AARAGDT+RA LM+ HL HV+ AL F A DL+ LLS Sbjct: 212 AARAGDTDRACALMDEHLEHVQTALNFTDGAAAGSDLVTALLS 254