BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0236.p (224 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777910.1| two component transcription regulator protei... 454 e-126 ref|YP_004755083.1| DNA-binding response regulator TctD [Collimo... 343 8e-93 ref|ZP_08275327.1| DNA-binding response regulator TctD [Oxalobac... 303 8e-81 ref|YP_524360.1| two component transcriptional regulator [Rhodof... 256 1e-66 ref|ZP_07774062.1| DNA-binding response regulator [Pseudomonas f... 256 2e-66 ref|YP_004751853.1| two-component response regulator [Collimonas... 256 2e-66 ref|YP_001810822.1| two component transcriptional regulator [Bur... 254 8e-66 ref|YP_775557.1| two component transcriptional regulator [Burkho... 253 1e-65 ref|YP_002871099.1| two component system, response regulator [Ps... 253 1e-65 ref|ZP_02376920.1| two component transcriptional regulator, wing... 253 2e-65 >ref|YP_003777910.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ66002.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 454 bits (1167), Expect = e-126, Method: Compositional matrix adjust. Identities = 224/224 (100%), Positives = 224/224 (100%) Query: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM Sbjct: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 Query: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ Sbjct: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 Query: 121 NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFT 180 NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFT Sbjct: 121 NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFT 180 Query: 181 LEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQAT 224 LEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQAT Sbjct: 181 LEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQAT 224 >ref|YP_004755083.1| DNA-binding response regulator TctD [Collimonas fungivorans Ter331] gb|AEK64260.1| DNA-binding response regulator TctD [Collimonas fungivorans Ter331] Length = 227 Score = 343 bits (881), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 169/222 (76%), Positives = 190/222 (85%) Query: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 MRILL+EDH+ELSRWL KA++DAH +VECA NGADADSLL TQ YALVILDL+LP+MDG+ Sbjct: 1 MRILLIEDHVELSRWLTKALQDAHWSVECAMNGADADSLLHTQQYALVILDLSLPKMDGL 60 Query: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 EVLKR+RARG++TPVLILTARGGL DRV GLN+GADDYLAKPFEL ELEARVKALLRR+Q Sbjct: 61 EVLKRLRARGSKTPVLILTARGGLQDRVQGLNLGADDYLAKPFELVELEARVKALLRRAQ 120 Query: 121 NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFT 180 EA SCGAL FDTVSR F+YG +LALTPREHAVLE LI R G V KEKLF +VF+ Sbjct: 121 GGEAPIYSCGALQFDTVSRMFSYGNAVLALTPREHAVLEVLISRAGRVVSKEKLFDEVFS 180 Query: 181 LEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQ 222 L D+A+ DAIEIYIHRLRKKL+ G V ITTLRGLGYLL+ Sbjct: 181 LVDDANPDAIEIYIHRLRKKLQRPGAEAVAITTLRGLGYLLE 222 >ref|ZP_08275327.1| DNA-binding response regulator TctD [Oxalobacteraceae bacterium IMCC9480] gb|EGF31200.1| DNA-binding response regulator TctD [Oxalobacteraceae bacterium IMCC9480] Length = 231 Score = 303 bits (777), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 158/226 (69%), Positives = 188/226 (83%), Gaps = 3/226 (1%) Query: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 MRILLVEDH+ELSRWL++A++D H+TVECA NGADAD+LL TQDYALV+LDLTLP+MDG+ Sbjct: 1 MRILLVEDHLELSRWLSRALQDVHMTVECASNGADADALLHTQDYALVLLDLTLPKMDGL 60 Query: 61 EVLKRMRARGN---RTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLR 117 +VL+R+RARG +TPV+ILTARGGL DRV GLN+GADDYLAKPFEL ELEARVKALLR Sbjct: 61 DVLRRLRARGGARGKTPVMILTARGGLDDRVQGLNLGADDYLAKPFELVELEARVKALLR 120 Query: 118 RSQNNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQ 177 RSQ NEA+ + CGAL FDTV+R FTYGG LALTPREHA LEALI R G + K+ LF Sbjct: 121 RSQGNEALVLRCGALHFDTVTRMFTYGGTALALTPREHAALEALIGRAGRAISKDTLFGA 180 Query: 178 VFTLEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQA 223 VF L+D+ + DA+++ IHR+RKKL+ ITTLRG+GYLLQA Sbjct: 181 VFALDDDVNPDALDLVIHRVRKKLDSAAADAAAITTLRGIGYLLQA 226 >ref|YP_524360.1| two component transcriptional regulator [Rhodoferax ferrireducens T118] gb|ABD70829.1| two component transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 239 Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 127/222 (57%), Positives = 164/222 (73%), Gaps = 3/222 (1%) Query: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 MRIL+VED+ EL++WL + +R TV+C NGADAD L ++ Y L+ILDL LP++DG Sbjct: 16 MRILVVEDNTELAQWLGRTLRKEQYTVDCIDNGADADFALKSEKYNLIILDLALPKLDGK 75 Query: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 EVL+R+RAR ++TPVLILTA + RVS L+ GADDY+AKPFE+EELEAR++ LLRRS Sbjct: 76 EVLRRLRARDDQTPVLILTANNTIQSRVSKLDQGADDYMAKPFEIEELEARIRMLLRRSS 135 Query: 121 NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFT 180 + ++CG LS++T +R F +LLALTPRE AVLE L+ + G TV K L Q +F+ Sbjct: 136 GQASPLIACGDLSYNTNTREFHISQQLLALTPRERAVLEMLLRKSGTTVTKHALAQSLFS 195 Query: 181 LEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQ 222 L ++AS DAIEIY+HRLRKKLEH I TLRGLGYLL+ Sbjct: 196 LSEDASTDAIEIYVHRLRKKLEHSS---AQIMTLRGLGYLLR 234 >ref|ZP_07774062.1| DNA-binding response regulator [Pseudomonas fluorescens WH6] gb|EFQ64826.1| DNA-binding response regulator [Pseudomonas fluorescens WH6] Length = 223 Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 133/223 (59%), Positives = 164/223 (73%), Gaps = 3/223 (1%) Query: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 MR+LLVEDH++L+ +A+A++ LTV+ H+G AD L ++DYA+ ILD+ LPRMDG Sbjct: 1 MRVLLVEDHLQLAESVAQALKSTGLTVDVLHDGVAADLALSSEDYAVAILDVGLPRMDGF 60 Query: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 EVL R+RARG PVL+LTAR + DRV GLN+GADDYLAKPFEL ELEARVKALLRRS Sbjct: 61 EVLARLRARGKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSV 120 Query: 121 NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFT 180 +CG L +D +R FT GGEL+ LT RE AVLEALI R G + KE+L QVF Sbjct: 121 LGGERQQTCGVLVYDLDTRRFTVGGELMTLTSREQAVLEALIARPGRVMSKEQLASQVFG 180 Query: 181 LEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQA 223 L++ AS DAIEIY+HRLRKKL+ + + I T RGLGYLL+A Sbjct: 181 LDEEASPDAIEIYVHRLRKKLDGQP---IAIVTFRGLGYLLEA 220 >ref|YP_004751853.1| two-component response regulator [Collimonas fungivorans Ter331] gb|AEK61030.1| two-component response regulator [Collimonas fungivorans Ter331] Length = 224 Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 127/222 (57%), Positives = 162/222 (72%), Gaps = 3/222 (1%) Query: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 MRILLVED+ LS WLA + TV+C +NGADAD LLLTQ Y LVILD++LP++DG Sbjct: 1 MRILLVEDNRPLSEWLALTLHRNKYTVDCVYNGADADHLLLTQQYELVILDMSLPKLDGS 60 Query: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 EVLKR+RAR N PVLILTA + R+ GLN GADDY+AKPF++ ELEAR++ALLRR+ Sbjct: 61 EVLKRLRARHNNVPVLILTANNSVEGRIVGLNTGADDYMAKPFDVNELEARIRALLRRAN 120 Query: 121 NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFT 180 + + CG+LS+D+ S F+ G L LT REHAVLE LI++ G TV K+ L + ++ Sbjct: 121 QQKNPILQCGSLSYDSNSLIFSIDGVALTLTRREHAVLETLIMKMGKTVSKQALAESLYA 180 Query: 181 LEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQ 222 + ++ S DAIE+YIHR+RKKLEH G I TLRGLGYLL+ Sbjct: 181 MAEDVSQDAIEVYIHRIRKKLEH---GDAAIITLRGLGYLLK 219 >ref|YP_001810822.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gb|ACB66606.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 224 Score = 254 bits (648), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 130/223 (58%), Positives = 169/223 (75%), Gaps = 3/223 (1%) Query: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 MR+LLVED+ L++ L A+ A V+ +G AD +L TQDYALVILDL LP++DG+ Sbjct: 1 MRVLLVEDNPNLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60 Query: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 EVL+R+RAR N PVLILTA G + DRV GL++GADDYLAKPFEL ELEAR +AL+RRS Sbjct: 61 EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120 Query: 121 NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFT 180 +E V CG LS+D++ R+F GGE L+LTPRE +VLE LI+R+G + KE L +++F Sbjct: 121 GHEHSRVECGPLSYDSIDRSFHLGGEPLSLTPRERSVLEVLILRNGRAINKETLSEKIFG 180 Query: 181 LEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQA 223 L+++ + DAIEIY++RLRKKLE+ G V I TLRGLGYLL+A Sbjct: 181 LDESVNADAIEIYVYRLRKKLENTG---VAIVTLRGLGYLLEA 220 >ref|YP_775557.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gb|ABI89223.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] Length = 224 Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 130/223 (58%), Positives = 169/223 (75%), Gaps = 3/223 (1%) Query: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 MR+LLVED+ L++ L A+ A V+ +G AD +L TQDYALVILDL LP++DG+ Sbjct: 1 MRVLLVEDNPNLAQSLNDALTAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60 Query: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 EVL+R+RAR N PVLILTA G + DRV GL++GADDYLAKPFEL ELEAR +AL+RRS Sbjct: 61 EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120 Query: 121 NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFT 180 +E V CG LS+D++ R+F GGE L+LTPRE +VLE LI+R+G + KE L +++F Sbjct: 121 GHEHSRVECGPLSYDSIDRSFHLGGEPLSLTPRERSVLEVLILRNGRAINKETLSEKIFG 180 Query: 181 LEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQA 223 L+++ + DAIEIY++RLRKKLE+ G V I TLRGLGYLL+A Sbjct: 181 LDESVNADAIEIYVYRLRKKLENTG---VAIVTLRGLGYLLEA 220 >ref|YP_002871099.1| two component system, response regulator [Pseudomonas fluorescens SBW25] emb|CAY47704.1| two component system, response regulator [Pseudomonas fluorescens SBW25] Length = 223 Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 132/223 (59%), Positives = 163/223 (73%), Gaps = 3/223 (1%) Query: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 MR+LLVEDH++L+ +A+A++ LTV+ H+G AD L +++YA ILD+ LPRMDG Sbjct: 1 MRVLLVEDHLQLAESVAQALKSTGLTVDVLHDGVAADLALSSEEYAAAILDVGLPRMDGF 60 Query: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 EVL R+RARG PVL+LTAR + DRV GLN+GADDYLAKPFEL ELEARVKALLRRS Sbjct: 61 EVLARLRARGKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSV 120 Query: 121 NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFT 180 +CG L +D +R FT GGEL+ LT RE AVLEALI R G + KE+L QVF Sbjct: 121 LGGERQQACGVLVYDLDTRRFTVGGELMTLTSREQAVLEALIARPGRVMSKEQLASQVFG 180 Query: 181 LEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQA 223 L++ AS DAIEIY+HRLRKKL+ + + I T RGLGYLL+A Sbjct: 181 LDEEASPDAIEIYVHRLRKKLDGQP---IAIVTFRGLGYLLEA 220 >ref|ZP_02376920.1| two component transcriptional regulator, winged helix family protein [Burkholderia ubonensis Bu] Length = 223 Score = 253 bits (645), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 130/223 (58%), Positives = 168/223 (75%), Gaps = 3/223 (1%) Query: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 MR+LLVED+ L++ L+ A+ A V+ +G AD +L TQDYALVILDL LP++DG+ Sbjct: 1 MRVLLVEDNPILAQSLSDALAAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60 Query: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 EVL+R+RAR N PVLILTA G + DRV GL++GADDYLAKPFEL ELEAR +AL+RRS Sbjct: 61 EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120 Query: 121 NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFT 180 +E V CG L+FD+V R+F GE L LTPRE +VLE LI+R+G + KE L +++F Sbjct: 121 GHEHSKVECGPLAFDSVDRSFRLAGEALPLTPRERSVLEVLILRNGRAINKETLSEKIFG 180 Query: 181 LEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQA 223 L+++ + DAIEIY++RLRKKLE+ G V I TLRGLGYLL+A Sbjct: 181 LDESVNADAIEIYVYRLRKKLENSG---VAIVTLRGLGYLLEA 220