BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0229.p (131 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777905.1| transmembrane outer membrane porin signal pe... 246 6e-64 ref|YP_004755078.1| porin [Collimonas fungivorans Ter331] >gi|34... 181 4e-44 emb|CCA86499.1| putative outer membrane porin protein [Ralstonia... 141 3e-32 emb|CBJ37950.1| putative outer membrane porin protein [Ralstonia... 141 4e-32 ref|YP_296308.1| porin [Ralstonia eutropha JMP134] >gi|72119201|... 140 4e-32 ref|NP_519858.1| transmembrane outer membrane porin signal pepti... 140 6e-32 ref|ZP_00946041.1| Outer membrane porin protein 32 precursor [Ra... 138 2e-31 ref|YP_003745653.1| outer membrane porin [Ralstonia solanacearum... 138 2e-31 emb|CCA81914.1| putative outer membrane porin protein [blood dis... 137 4e-31 gb|AEG69075.1| transmembrane outer membrane porin protein [Ralst... 137 4e-31 >ref|YP_003777905.1| transmembrane outer membrane porin signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ65997.1| transmembrane outer membrane porin signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 354 Score = 246 bits (629), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 119/119 (100%), Positives = 119/119 (100%) Query: 13 QPSEAWKFNLGYRYYKKSLATGAADLRSDFFWGGAAYKFTPAMTLIGAIYYQNIKNVAND 72 QPSEAWKFNLGYRYYKKSLATGAADLRSDFFWGGAAYKFTPAMTLIGAIYYQNIKNVAND Sbjct: 236 QPSEAWKFNLGYRYYKKSLATGAADLRSDFFWGGAAYKFTPAMTLIGAIYYQNIKNVAND 295 Query: 73 ADPIMYSLRLKYAMSKRTDLYLSTAYAKAKNGQLVGLSRDDAGYGSSQFGMTLGMQHRF 131 ADPIMYSLRLKYAMSKRTDLYLSTAYAKAKNGQLVGLSRDDAGYGSSQFGMTLGMQHRF Sbjct: 296 ADPIMYSLRLKYAMSKRTDLYLSTAYAKAKNGQLVGLSRDDAGYGSSQFGMTLGMQHRF 354 >ref|YP_004755078.1| porin [Collimonas fungivorans Ter331] gb|AEK64255.1| Porin, Gram-negative type [Collimonas fungivorans Ter331] Length = 378 Score = 181 bits (458), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 90/121 (74%), Positives = 100/121 (82%), Gaps = 2/121 (1%) Query: 13 QPSEAWKFNLGYRYYKKSLATGAADLRSDFFWGGAAYKFTPAMTLIGAIYYQNIKNVAN- 71 Q +LGYR YKK+LA+ AADLRSDFFWGGA+YK TP +TLIGAIYYQNIKNVA+ Sbjct: 258 QLGSNLSLSLGYRNYKKTLASNAADLRSDFFWGGASYKVTPVVTLIGAIYYQNIKNVASG 317 Query: 72 -DADPIMYSLRLKYAMSKRTDLYLSTAYAKAKNGQLVGLSRDDAGYGSSQFGMTLGMQHR 130 DADPIMYS+R KYA+SKRTDLYLS AYAKAKN QLVGLSRDD YGSSQ G+ G+QHR Sbjct: 318 KDADPIMYSVRGKYALSKRTDLYLSAAYAKAKNSQLVGLSRDDIAYGSSQTGVIAGIQHR 377 Query: 131 F 131 F Sbjct: 378 F 378 >emb|CCA86499.1| putative outer membrane porin protein [Ralstonia syzygii R24] Length = 353 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 76/138 (55%), Positives = 91/138 (65%), Gaps = 9/138 (6%) Query: 2 TAPPAPTWPQIQPSEA--------WKFNLGYRYYKKSLATGAADLRSDFFWGGAAYKFTP 53 + PA T IQ A K GYR YK++ T AA RSD +W GA+Y FTP Sbjct: 217 STTPADTTNYIQGIHAGASYDFGALKLFAGYRNYKRTFTTAAATQRSDMYWAGASYDFTP 276 Query: 54 AMTLIGAIYYQNIKNVANDADPIMYSLRLKYAMSKRTDLYLSTAYAKAKNGQLVGLSRDD 113 A TL GA+Y QNIK DADPI++SLR +YA+SKRT YL+ YAKA+NGQ V LSRD Sbjct: 277 AFTLYGAVYKQNIKG-GTDADPILFSLRAQYALSKRTTAYLAGGYAKARNGQNVSLSRDV 335 Query: 114 AGYGSSQFGMTLGMQHRF 131 AG+G+SQ GMT G+QHRF Sbjct: 336 AGFGNSQVGMTAGLQHRF 353 >emb|CBJ37950.1| putative outer membrane porin protein [Ralstonia solanacearum CMR15] Length = 353 Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 75/138 (54%), Positives = 92/138 (66%), Gaps = 9/138 (6%) Query: 2 TAPPAPTWPQIQPSEA--------WKFNLGYRYYKKSLATGAADLRSDFFWGGAAYKFTP 53 + PA T IQ A K GYR YK++ T AA RSD +W GA+Y+FTP Sbjct: 217 STTPADTTDYIQGIHAGASYDFGALKLFAGYRNYKRAFTTAAATQRSDMYWAGASYEFTP 276 Query: 54 AMTLIGAIYYQNIKNVANDADPIMYSLRLKYAMSKRTDLYLSTAYAKAKNGQLVGLSRDD 113 A TL GA+Y QNIK DADPI++SLR +YA+SKRT YL+ YAKA+NGQ V LSRD Sbjct: 277 AFTLFGAVYKQNIKG-GTDADPILFSLRAQYALSKRTTAYLAGGYAKARNGQNVSLSRDV 335 Query: 114 AGYGSSQFGMTLGMQHRF 131 AG+G+SQ G+T G+QHRF Sbjct: 336 AGFGNSQVGVTAGLQHRF 353 >ref|YP_296308.1| porin [Ralstonia eutropha JMP134] gb|AAZ61464.1| Porin, Gram-negative type [Ralstonia eutropha JMP134] Length = 367 Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 70/109 (64%), Positives = 83/109 (76%), Gaps = 1/109 (0%) Query: 23 GYRYYKKSLATGAADLRSDFFWGGAAYKFTPAMTLIGAIYYQNIKNVANDADPIMYSLRL 82 GYR YK++L TGAA RSD +WGGA+Y FTPA TL GA+Y QNIK NDADPI++SLR Sbjct: 260 GYRNYKRTLTTGAASERSDMYWGGASYDFTPAFTLYGAVYKQNIKG-GNDADPILFSLRA 318 Query: 83 KYAMSKRTDLYLSTAYAKAKNGQLVGLSRDDAGYGSSQFGMTLGMQHRF 131 +Y+ SKRT YLS YAKA+NGQ V LSRD GY +SQ G+ G+QHRF Sbjct: 319 QYSFSKRTLAYLSAGYAKARNGQNVSLSRDFVGYANSQTGVMAGLQHRF 367 >ref|NP_519858.1| transmembrane outer membrane porin signal peptide protein [Ralstonia solanacearum GMI1000] emb|CAD15439.1| putative transmembrane outer membrane porin signal peptide protein [Ralstonia solanacearum GMI1000] Length = 353 Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 75/138 (54%), Positives = 91/138 (65%), Gaps = 9/138 (6%) Query: 2 TAPPAPTWPQIQPSEA--------WKFNLGYRYYKKSLATGAADLRSDFFWGGAAYKFTP 53 + PA T IQ A K GYR YK++ T AA RSD +W GA+Y FTP Sbjct: 217 STTPADTTDYIQGIHAGASYDFGALKLFAGYRNYKRAFTTAAATQRSDMYWAGASYDFTP 276 Query: 54 AMTLIGAIYYQNIKNVANDADPIMYSLRLKYAMSKRTDLYLSTAYAKAKNGQLVGLSRDD 113 A TL GA+Y QNIK DADPI++SLR +YA+SKRT YL+ YAKA+NGQ V LSRD Sbjct: 277 AFTLFGAVYKQNIKG-GTDADPILFSLRAQYALSKRTTAYLAGGYAKARNGQNVSLSRDV 335 Query: 114 AGYGSSQFGMTLGMQHRF 131 AG+G+SQ G+T G+QHRF Sbjct: 336 AGFGNSQVGVTAGLQHRF 353 >ref|ZP_00946041.1| Outer membrane porin protein 32 precursor [Ralstonia solanacearum UW551] ref|YP_002259467.1| transmembrane outer membrane porin protein [Ralstonia solanacearum IPO1609] gb|EAP71468.1| Outer membrane porin protein 32 precursor [Ralstonia solanacearum UW551] emb|CAQ35731.1| transmembrane outer membrane porin protein [Ralstonia solanacearum MolK2] emb|CAQ61399.1| transmembrane outer membrane porin protein [Ralstonia solanacearum IPO1609] Length = 353 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 74/138 (53%), Positives = 90/138 (65%), Gaps = 9/138 (6%) Query: 2 TAPPAPTWPQIQPSEA--------WKFNLGYRYYKKSLATGAADLRSDFFWGGAAYKFTP 53 + PA T IQ A K GYR YK++ T AA RSD +W GA+Y FTP Sbjct: 217 STTPADTTDYIQGIHAGASYDFGALKLFAGYRNYKRAFTTAAAAQRSDMYWAGASYDFTP 276 Query: 54 AMTLIGAIYYQNIKNVANDADPIMYSLRLKYAMSKRTDLYLSTAYAKAKNGQLVGLSRDD 113 A TL GA+Y QNIK DADPI++SLR +YA+SKRT YL+ YAKA+NGQ V LSRD Sbjct: 277 AFTLFGAVYKQNIKG-GTDADPILFSLRAQYALSKRTTAYLAGGYAKARNGQNVSLSRDV 335 Query: 114 AGYGSSQFGMTLGMQHRF 131 G+G+SQ G+T G+QHRF Sbjct: 336 VGFGNSQVGVTAGLQHRF 353 >ref|YP_003745653.1| outer membrane porin [Ralstonia solanacearum CFBP2957] emb|CBJ43038.1| putative outer membrane porin protein [Ralstonia solanacearum CFBP2957] Length = 353 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 74/138 (53%), Positives = 90/138 (65%), Gaps = 9/138 (6%) Query: 2 TAPPAPTWPQIQPSEA--------WKFNLGYRYYKKSLATGAADLRSDFFWGGAAYKFTP 53 + PA T IQ A K GYR YK++ T AA RSD +W GA+Y FTP Sbjct: 217 STTPADTTDYIQGIHAGASYDFGALKLFAGYRNYKRAFTTAAAAQRSDMYWAGASYDFTP 276 Query: 54 AMTLIGAIYYQNIKNVANDADPIMYSLRLKYAMSKRTDLYLSTAYAKAKNGQLVGLSRDD 113 A TL GA+Y QNIK DADPI++SLR +YA+SKRT YL+ YAKA+NGQ V LSRD Sbjct: 277 AFTLFGAVYKQNIKG-GTDADPILFSLRAQYALSKRTTAYLAGGYAKARNGQNVSLSRDV 335 Query: 114 AGYGSSQFGMTLGMQHRF 131 G+G+SQ G+T G+QHRF Sbjct: 336 VGFGNSQVGVTAGLQHRF 353 >emb|CCA81914.1| putative outer membrane porin protein [blood disease bacterium R229] Length = 353 Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 74/138 (53%), Positives = 90/138 (65%), Gaps = 9/138 (6%) Query: 2 TAPPAPTWPQIQPSEA--------WKFNLGYRYYKKSLATGAADLRSDFFWGGAAYKFTP 53 + PA T IQ A K GYR YK++ T A RSD +W GA+Y FTP Sbjct: 217 STTPADTTDYIQGIHAGASYDFGALKLFAGYRNYKRAFTTATAAQRSDMYWAGASYDFTP 276 Query: 54 AMTLIGAIYYQNIKNVANDADPIMYSLRLKYAMSKRTDLYLSTAYAKAKNGQLVGLSRDD 113 A TL GA+Y QNIK DADPI++SLR +YA+SKRT YL+ YAKA+NGQ V LSRD Sbjct: 277 AFTLYGAVYKQNIKG-GTDADPILFSLRAQYALSKRTTAYLAGGYAKARNGQNVSLSRDV 335 Query: 114 AGYGSSQFGMTLGMQHRF 131 AG+G+SQ G+T G+QHRF Sbjct: 336 AGFGNSQVGVTAGLQHRF 353 >gb|AEG69075.1| transmembrane outer membrane porin protein [Ralstonia solanacearum Po82] Length = 353 Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 74/138 (53%), Positives = 89/138 (64%), Gaps = 9/138 (6%) Query: 2 TAPPAPTWPQIQPSEA--------WKFNLGYRYYKKSLATGAADLRSDFFWGGAAYKFTP 53 + PA T IQ A K GYR YK++ T AA RSD +W GA+Y FTP Sbjct: 217 STTPADTTDYIQGIHAGASYDFGALKLFAGYRNYKRAFTTAAAAQRSDMYWAGASYDFTP 276 Query: 54 AMTLIGAIYYQNIKNVANDADPIMYSLRLKYAMSKRTDLYLSTAYAKAKNGQLVGLSRDD 113 A TL GA+Y QNIK DADPI++SLR +YA+SKRT YL+ YAKA+NGQ V LSRD Sbjct: 277 AFTLFGAVYKQNIKG-GTDADPILFSLRAQYALSKRTTAYLAGGYAKARNGQNVSLSRDV 335 Query: 114 AGYGSSQFGMTLGMQHRF 131 G+G+SQ G T G+QHRF Sbjct: 336 VGFGNSQVGATAGLQHRF 353