BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0218.p (125 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777897.1| two component response regulator protein [He... 245 2e-63 ref|ZP_06190712.1| transcriptional regulatory protein [Serratia ... 87 1e-15 ref|YP_004115800.1| response regulator receiver protein [Pantoea... 84 5e-15 ref|YP_004501528.1| response regulator receiver protein [Serrati... 83 2e-14 ref|YP_001354109.1| hypothetical protein mma_2419 [Janthinobacte... 82 3e-14 ref|ZP_07200901.1| response regulator receiver domain protein [d... 80 1e-13 ref|ZP_07377067.1| response regulator receiver protein [Pantoea ... 80 1e-13 ref|YP_001991388.1| response regulator receiver protein [Rhodops... 78 4e-13 ref|YP_004086395.1| response regulator receiver protein [Asticca... 78 5e-13 ref|ZP_08497660.1| C4-dicarboxylate transport transcriptional re... 77 8e-13 >ref|YP_003777897.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65989.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 125 Score = 245 bits (625), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 124/125 (99%), Positives = 124/125 (99%) Query: 1 MPSSHGAIAVIDDDHGVRAALCNLLDSAGYRSCRFSSGEEFLASDCMPVAVCAIIDLQLA 60 MPSSHGAIAVIDDDHGVRAALCNLLDSAGYRSCRFSSGEEFLASDCMPVAVCAIIDLQLA Sbjct: 1 MPSSHGAIAVIDDDHGVRAALCNLLDSAGYRSCRFSSGEEFLASDCMPVAVCAIIDLQLA 60 Query: 61 CMSGFELAERLALARPDLPLLFISAQVTPHQQQRASALGGALLAKPVDADTLLALLTACL 120 CMSGFELAERLALARPDLPLLFISAQVTP QQQRASALGGALLAKPVDADTLLALLTACL Sbjct: 61 CMSGFELAERLALARPDLPLLFISAQVTPRQQQRASALGGALLAKPVDADTLLALLTACL 120 Query: 121 LYGRP 125 LYGRP Sbjct: 121 LYGRP 125 >ref|ZP_06190712.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gb|EFA16218.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 127 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/115 (42%), Positives = 65/115 (56%), Gaps = 2/115 (1%) Query: 8 IAVIDDDHGVRAALCNLLDSAGYRSCRFSSGEEFLASDC-MPVAVCAIIDLQLACMSGFE 66 IA++DD+ VR+ L NLL S GY +C F S E FL + A IID++L M GFE Sbjct: 7 IAIVDDERSVRSGLINLLQSDGYTTCAFESAEAFLNEKTALSDASLVIIDIKLKGMGGFE 66 Query: 67 LAERLALARPDLPLLFISAQVTPHQQQRASALGG-ALLAKPVDADTLLALLTACL 120 L E++ P++FIS + Q+ A LG A L KP+D DTLL L+ L Sbjct: 67 LYEKIKTYATPPPVIFISGHGDENMQRFALKLGAVAFLRKPIDIDTLLGLIQHAL 121 >ref|YP_004115800.1| response regulator receiver protein [Pantoea sp. At-9b] gb|ADU69244.1| response regulator receiver protein [Pantoea sp. At-9b] Length = 127 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 51/120 (42%), Positives = 66/120 (55%), Gaps = 2/120 (1%) Query: 8 IAVIDDDHGVRAALCNLLDSAGYRSCRFSSGEEFLASD-CMPVAVCAIIDLQLACMSGFE 66 I ++DD+ VR L NLL S GY + + SGE L D + A IID++L MSGFE Sbjct: 7 IVIVDDERSVRNGLSNLLHSDGYTTSLYESGEALLCDDNALTGAAMLIIDVRLKGMSGFE 66 Query: 67 LAERLALARPDLPLLFISAQVTPHQQQRASALGG-ALLAKPVDADTLLALLTACLLYGRP 125 L L LP++FISA+ Q A ALG L KP+D DTLL ++ L +G P Sbjct: 67 LFAVLQQQAVTLPVIFISAEQEEAVQWYAIALGAVTFLRKPIDVDTLLTIIRNELSHGEP 126 >ref|YP_004501528.1| response regulator receiver protein [Serratia sp. AS12] ref|YP_004506480.1| response regulator receiver protein [Serratia sp. AS9] gb|AEF46219.1| response regulator receiver protein [Serratia sp. AS9] gb|AEF51171.1| response regulator receiver protein [Serratia sp. AS12] gb|AEG28879.1| response regulator receiver protein [Serratia sp. AS13] Length = 127 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 63/115 (54%), Gaps = 2/115 (1%) Query: 8 IAVIDDDHGVRAALCNLLDSAGYRSCRFSSGEEFLASDC-MPVAVCAIIDLQLACMSGFE 66 IA++DD+ VR+ L NLL S GY +C F S E FL + A IID++L M GFE Sbjct: 7 IAIVDDERSVRSGLINLLQSDGYTTCAFESAEAFLNEKTALSDASLVIIDIKLKGMGGFE 66 Query: 67 LAERLALARPDLPLLFISAQVTPHQQQRASALGG-ALLAKPVDADTLLALLTACL 120 E++ P++FIS + Q+ A LG A L KP+D D LL L+ L Sbjct: 67 FYEKIKTYATPPPVIFISGHGDENMQRLALKLGAVAFLRKPIDIDALLGLIQHAL 121 >ref|YP_001354109.1| hypothetical protein mma_2419 [Janthinobacterium sp. Marseille] gb|ABR91296.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 128 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 68/118 (57%) Query: 8 IAVIDDDHGVRAALCNLLDSAGYRSCRFSSGEEFLASDCMPVAVCAIIDLQLACMSGFEL 67 IAV++DD+G+RAA+ +L++ G+ F+S E FL S + C ++DL L +SGFEL Sbjct: 10 IAVVEDDNGLRAAILRMLNACGWNPVGFASAEGFLESAVVESIDCLVLDLYLPGISGFEL 69 Query: 68 AERLALARPDLPLLFISAQVTPHQQQRASALGGALLAKPVDADTLLALLTACLLYGRP 125 E++ D+P++FI+AQ + R +G L KP +L + + CL + P Sbjct: 70 LEQIKAKGMDIPIIFITAQDDEKIRVRVEGVGKLYLPKPFTGQSLASKVKDCLKHAGP 127 >ref|ZP_07200901.1| response regulator receiver domain protein [delta proteobacterium NaphS2] gb|EFK09797.1| response regulator receiver domain protein [delta proteobacterium NaphS2] Length = 146 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 1 MPSSHGAIAVIDDDHGVRAALCNLLDSAGYRSCRFSSGEEFLASDCMPVAVCAIIDLQLA 60 M + V+DDD +R AL LL S GY + F S E FL C ++D++L Sbjct: 1 MQKKRFTVYVVDDDESIRKALKRLLGSVGYHTLTFESAEAFLEFPLERGEGCLVLDIRLP 60 Query: 61 CMSGFELAERLALARPDLPLLFISAQVTPHQQQRASALGG-ALLAKPVDADTLLALLTAC 119 M+GFEL E+L L + P+LF++A P ++RA+ +G A L KP L + C Sbjct: 61 GMTGFELQEKLLLQGSEYPVLFMTAHDDPQWRERATKVGAVACLKKPFLEQKLFEAIGLC 120 >ref|ZP_07377067.1| response regulator receiver protein [Pantoea sp. aB] gb|EFM21799.1| response regulator receiver protein [Pantoea sp. aB] Length = 127 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/112 (47%), Positives = 64/112 (57%), Gaps = 4/112 (3%) Query: 8 IAVIDDDHGVRAALCNLLDSAGYRSCRFSSGEEFLA-SDCMPVAVCAIIDLQLACMSGFE 66 I ++DD+ VR+ L NLL S GY + F SGE LA D + A IID+ L MSGFE Sbjct: 7 IVIVDDERAVRSGLSNLLHSDGYVTRSFESGEALLADDDALVEAGMLIIDVGLKGMSGFE 66 Query: 67 LAERLALARPDL-PLLFISAQVTPHQQQRASALGG-ALLAKPVDADTLLALL 116 L L AR DL P++FISA V A LG L KP+D DTLL L+ Sbjct: 67 LFTLLK-ARADLPPVIFISADVEETTLWYAIGLGAMTFLRKPIDVDTLLTLI 117 >ref|YP_001991388.1| response regulator receiver protein [Rhodopseudomonas palustris TIE-1] gb|ACF00913.1| response regulator receiver protein [Rhodopseudomonas palustris TIE-1] Length = 128 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 48/117 (41%), Positives = 66/117 (56%), Gaps = 1/117 (0%) Query: 8 IAVIDDDHGVRAALCNLLDSAGYRSCRFSSGEEFLASDCMPVAVCAIIDLQLACMSGFEL 67 I VIDDD VR A+ L+ S G+ + F+S +FLASD C I D+Q+A MSG +L Sbjct: 7 ITVIDDDENVRIAIEGLIRSLGHTAHGFASAPQFLASDTRSTTCCLITDVQMAEMSGLDL 66 Query: 68 AERLALARPDLPLLFISAQVTPHQQQRASALGG-ALLAKPVDADTLLALLTACLLYG 123 RLA P+++I+A + RA ALG L+KP DA+TL+ + L G Sbjct: 67 HARLAAEGSAPPVIYITAFPDERIEARARALGAIGFLSKPFDAETLVHCIQRALASG 123 >ref|YP_004086395.1| response regulator receiver protein [Asticcacaulis excentricus CB 48] gb|ADU12244.1| response regulator receiver protein [Asticcacaulis excentricus CB 48] Length = 125 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 48/121 (39%), Positives = 70/121 (57%), Gaps = 2/121 (1%) Query: 5 HGAIAVIDDDHGVRAALCNLLDSAGYRSCRFSSGEEFLASDCMPVAVCAIIDLQLACMSG 64 G +A++DDD VR A +LL+S G + F+S +FL ++ +A C I D+Q+ MSG Sbjct: 3 KGLVAIVDDDEMVRMATASLLNSFGIFTLHFASARQFLEANRKNIA-CLITDIQMPDMSG 61 Query: 65 FELAERLALARPDLPLLFISAQVTPHQQQRASALGGA-LLAKPVDADTLLALLTACLLYG 123 +L L AR LP++ I+A TP + L A LL KP+D D L+AL+ A L G Sbjct: 62 LDLLRVLRQARDRLPVILITAFATPTLLTQIEPLETAGLLEKPLDGDKLIALVLAALDEG 121 Query: 124 R 124 + Sbjct: 122 K 122 >ref|ZP_08497660.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Enterobacter hormaechei ATCC 49162] emb|CBK87543.1| Response regulator [Enterobacter cloacae subsp. cloacae NCTC 9394] gb|EGK61505.1| C4-dicarboxylate transport transcriptional regulatory protein DctD [Enterobacter hormaechei ATCC 49162] Length = 126 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 48/109 (44%), Positives = 64/109 (58%), Gaps = 3/109 (2%) Query: 8 IAVIDDDHGVRAALCNLLDSAGYRSCRFSSGEEFLASD-CMPVAVCAIIDLQLACMSGFE 66 IA+IDD+ VR+ L NLL S GY + F S E FL+ + A I D++L M+G E Sbjct: 7 IAIIDDERSVRSGLSNLLQSEGYATDTFDSAEVFLSHPLALSGASLVITDIKLRGMNGIE 66 Query: 67 LAERLA-LARPDLPLLFISAQVTPHQQQRASALG-GALLAKPVDADTLL 113 L E+L LA P P+LFIS + Q+ A +LG A L KP++ D LL Sbjct: 67 LFEKLRLLATPPPPILFISGHADENMQRYALSLGAAAFLRKPINIDILL 115