BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0202.p (206 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777883.1| response regulator protein [Herbaspirillum s... 416 e-115 ref|YP_004501520.1| two component LuxR family transcriptional re... 254 7e-66 ref|YP_004115798.1| LuxR family two component transcriptional re... 252 2e-65 ref|ZP_06190706.1| transcriptional regulatory protein [Serratia ... 250 1e-64 ref|ZP_07377065.1| two component transcriptional regulator, LuxR... 247 9e-64 ref|YP_003730006.1| alkaline phosphatase synthesis transcription... 242 3e-62 ref|YP_003740040.1| LuxR family transcripitonal regulator [Erwin... 241 6e-62 ref|YP_003611231.1| two component transcriptional regulator, Lux... 221 5e-56 ref|ZP_08497658.1| LuxR family DNA-binding response regulator [E... 204 9e-51 emb|CBK87544.1| Response regulator [Enterobacter cloacae subsp. ... 202 3e-50 >ref|YP_003777883.1| response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65975.1| response regulator protein [Herbaspirillum seropedicae SmR1] Length = 206 Score = 416 bits (1070), Expect = e-115, Method: Compositional matrix adjust. Identities = 206/206 (100%), Positives = 206/206 (100%) Query: 1 MERTVFVVDDDNMVRTALLRLLASAGYAAHGFASADEFLQARLPAVPCCLLLDMKMPGSD 60 MERTVFVVDDDNMVRTALLRLLASAGYAAHGFASADEFLQARLPAVPCCLLLDMKMPGSD Sbjct: 1 MERTVFVVDDDNMVRTALLRLLASAGYAAHGFASADEFLQARLPAVPCCLLLDMKMPGSD 60 Query: 61 GFEVVRRLERRGDAIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIQDERLLGAVEEALQI 120 GFEVVRRLERRGDAIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIQDERLLGAVEEALQI Sbjct: 61 GFEVVRRLERRGDAIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIQDERLLGAVEEALQI 120 Query: 121 AERQLQSRTEHAACTSRLETLTPREREVLELAIGGLLNKQIATELGISEITVKVHKRRVM 180 AERQLQSRTEHAACTSRLETLTPREREVLELAIGGLLNKQIATELGISEITVKVHKRRVM Sbjct: 121 AERQLQSRTEHAACTSRLETLTPREREVLELAIGGLLNKQIATELGISEITVKVHKRRVM 180 Query: 181 DKMQTKTLADLVRAAERLQISSARQR 206 DKMQTKTLADLVRAAERLQISSARQR Sbjct: 181 DKMQTKTLADLVRAAERLQISSARQR 206 >ref|YP_004501520.1| two component LuxR family transcriptional regulator [Serratia sp. AS12] ref|YP_004506472.1| two component LuxR family transcriptional regulator [Serratia sp. AS9] gb|AEF46211.1| two component transcriptional regulator, LuxR family [Serratia sp. AS9] gb|AEF51163.1| two component transcriptional regulator, LuxR family [Serratia sp. AS12] gb|AEG28871.1| two component transcriptional regulator, LuxR family [Serratia sp. AS13] Length = 206 Score = 254 bits (648), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 123/204 (60%), Positives = 152/204 (74%) Query: 1 MERTVFVVDDDNMVRTALLRLLASAGYAAHGFASADEFLQARLPAVPCCLLLDMKMPGSD 60 ME V+VVDDD+ VR +++RLL SAGY+A F A+ FL PA+P C++LDM+MP D Sbjct: 1 MEHVVYVVDDDHSVRQSIVRLLNSAGYSAVDFDCAEAFLSHSFPAIPGCIILDMRMPSGD 60 Query: 61 GFEVVRRLERRGDAIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIQDERLLGAVEEALQI 120 GFEV L+ G +PVIF++GYGTIP +VQAMKAGAHEFLTKP+ + LL AV+EAL + Sbjct: 61 GFEVTDALKASGREMPVIFLTGYGTIPLSVQAMKAGAHEFLTKPVASDDLLKAVQEALNL 120 Query: 121 AERQLQSRTEHAACTSRLETLTPREREVLELAIGGLLNKQIATELGISEITVKVHKRRVM 180 A EH R TLTPRE+EVLEL I GL+NKQIA ELG+SEITVKVH+RRVM Sbjct: 121 AAENSDQLREHYELKQRHLTLTPREQEVLELTIKGLMNKQIAAELGVSEITVKVHRRRVM 180 Query: 181 DKMQTKTLADLVRAAERLQISSAR 204 DKMQ ++LADLVR AERL +S ++ Sbjct: 181 DKMQVRSLADLVRDAERLNLSKSK 204 >ref|YP_004115798.1| LuxR family two component transcriptional regulator [Pantoea sp. At-9b] gb|ADU69242.1| two component transcriptional regulator, LuxR family [Pantoea sp. At-9b] Length = 206 Score = 252 bits (644), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 128/206 (62%), Positives = 150/206 (72%) Query: 1 MERTVFVVDDDNMVRTALLRLLASAGYAAHGFASADEFLQARLPAVPCCLLLDMKMPGSD 60 M V+VVDDD VR+AL LL+S Y FA+A FL PAVP CL+LD+ MPG+D Sbjct: 1 MNHIVYVVDDDESVRSALSNLLSSENYDVIAFATAQAFLDHPFPAVPGCLILDINMPGAD 60 Query: 61 GFEVVRRLERRGDAIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIQDERLLGAVEEALQI 120 GF VV L RG AIP IF++G+GTIP TV+AMK GA EFLTKP+ E+LL AV EALQ+ Sbjct: 61 GFAVVNALNARGYAIPTIFLTGFGTIPVTVRAMKTGACEFLTKPVDPEQLLQAVAEALQM 120 Query: 121 AERQLQSRTEHAACTSRLETLTPREREVLELAIGGLLNKQIATELGISEITVKVHKRRVM 180 AE L S E TSR +LTPRE EV+ LAI GLLNKQIA E+GISEIT KVHKRRVM Sbjct: 121 AEENLASSQEKYDITSRHLSLTPRESEVMLLAISGLLNKQIAAEMGISEITAKVHKRRVM 180 Query: 181 DKMQTKTLADLVRAAERLQISSARQR 206 +KM ++L+DLVRAAERL I S R+R Sbjct: 181 EKMNVRSLSDLVRAAERLNILSTRRR 206 >ref|ZP_06190706.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gb|EFA16212.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 206 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 122/204 (59%), Positives = 150/204 (73%) Query: 1 MERTVFVVDDDNMVRTALLRLLASAGYAAHGFASADEFLQARLPAVPCCLLLDMKMPGSD 60 ME V+VVDDD+ VR +++RLL SAGY A F A+ FL PA+P C++LDM+MP D Sbjct: 1 MEHVVYVVDDDHSVRQSIVRLLNSAGYNAVDFDCAEAFLTHAFPAIPGCIILDMRMPSGD 60 Query: 61 GFEVVRRLERRGDAIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIQDERLLGAVEEALQI 120 GF V L+ G +PVIF++GYGTIP +VQAMKAGAHEFLTKP+ + LL AV+EAL + Sbjct: 61 GFAVTDALKASGREMPVIFLTGYGTIPLSVQAMKAGAHEFLTKPVASDDLLKAVQEALNL 120 Query: 121 AERQLQSRTEHAACTSRLETLTPREREVLELAIGGLLNKQIATELGISEITVKVHKRRVM 180 A EH R TLTPRE+EVLEL I GL+NKQIA ELG+SEITVKVH+RRVM Sbjct: 121 AAENSDQLREHYELKQRHLTLTPREQEVLELTIKGLMNKQIAAELGVSEITVKVHRRRVM 180 Query: 181 DKMQTKTLADLVRAAERLQISSAR 204 DKMQ ++LADLVR AERL +S ++ Sbjct: 181 DKMQVRSLADLVRHAERLNLSKSK 204 >ref|ZP_07377065.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] gb|EFM21797.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] Length = 206 Score = 247 bits (630), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 120/206 (58%), Positives = 152/206 (73%) Query: 1 MERTVFVVDDDNMVRTALLRLLASAGYAAHGFASADEFLQARLPAVPCCLLLDMKMPGSD 60 M V++VDDD V +AL LL + Y F+SAD+FL L +PCCL+LD+ +PG+D Sbjct: 1 MNSIVYIVDDDAAVTSALTNLLIADDYTVISFSSADDFLSHALTPLPCCLILDINLPGAD 60 Query: 61 GFEVVRRLERRGDAIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIQDERLLGAVEEALQI 120 GF+V + L RG AIP IF++G+GTIP TV+AMK GA+EFLTKP++ ER+L AV EAL+I Sbjct: 61 GFDVAQALIDRGYAIPTIFLTGFGTIPVTVRAMKTGAYEFLTKPVEPERILQAVAEALEI 120 Query: 121 AERQLQSRTEHAACTSRLETLTPREREVLELAIGGLLNKQIATELGISEITVKVHKRRVM 180 AE+ L S E R +TLTPRE EV+ LAI GLLNKQIA E+G+SEIT KVHKRRVM Sbjct: 121 AEQNLASSQERREIVQRHQTLTPRESEVMLLAISGLLNKQIAAEMGVSEITAKVHKRRVM 180 Query: 181 DKMQTKTLADLVRAAERLQISSARQR 206 +KM ++L DLVRAAERL I +R+R Sbjct: 181 EKMNARSLTDLVRAAERLNIEHSRRR 206 >ref|YP_003730006.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Pantoea vagans C9-1] gb|ADI78334.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Pantoea vagans C9-1] Length = 206 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 117/206 (56%), Positives = 150/206 (72%) Query: 1 MERTVFVVDDDNMVRTALLRLLASAGYAAHGFASADEFLQARLPAVPCCLLLDMKMPGSD 60 M V++VDDD V +AL LL + Y F+SAD+FL +P +PCCL+LD+ +PG+D Sbjct: 1 MNPIVYIVDDDVAVTSALRNLLTADDYTVISFSSADDFLTHAIPPLPCCLILDINLPGAD 60 Query: 61 GFEVVRRLERRGDAIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIQDERLLGAVEEALQI 120 GF+V + L RG IP IF++G+GTIP TV+AMK GA+EFLTKP+ +R+L AV EAL+I Sbjct: 61 GFDVAQALLDRGYTIPTIFLTGFGTIPVTVRAMKTGAYEFLTKPVDPDRMLQAVAEALRI 120 Query: 121 AERQLQSRTEHAACTSRLETLTPREREVLELAIGGLLNKQIATELGISEITVKVHKRRVM 180 AE+ + S E R +TLTPRE EV+ LAI GLLNKQIA E+G+SEIT KVHKRRVM Sbjct: 121 AEQNMASSEERREIFQRHQTLTPRESEVMLLAISGLLNKQIAAEMGVSEITAKVHKRRVM 180 Query: 181 DKMQTKTLADLVRAAERLQISSARQR 206 +KM ++L DLVRAAERL I R+R Sbjct: 181 EKMNARSLTDLVRAAERLNIDHTRRR 206 >ref|YP_003740040.1| LuxR family transcripitonal regulator [Erwinia billingiae Eb661] emb|CAX58180.1| Two component transcriptional regulator, LuxR family [Erwinia billingiae Eb661] Length = 206 Score = 241 bits (614), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 121/206 (58%), Positives = 146/206 (70%) Query: 1 MERTVFVVDDDNMVRTALLRLLASAGYAAHGFASADEFLQARLPAVPCCLLLDMKMPGSD 60 M V+VVDDD V TAL LL+S Y F+S D FL PCCL++D+ MPG+D Sbjct: 1 MNHIVYVVDDDESVTTALTNLLSSQNYDVAAFSSPDAFLAHPFYPSPCCLIVDINMPGTD 60 Query: 61 GFEVVRRLERRGDAIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIQDERLLGAVEEALQI 120 GF V L RG +IP IF++ +GTIP TV+AMKAGA EFLTKP+ ERLL AVEEAL+I Sbjct: 61 GFGVASALMERGYSIPTIFLTSFGTIPVTVRAMKAGAFEFLTKPVDPERLLQAVEEALRI 120 Query: 121 AERQLQSRTEHAACTSRLETLTPREREVLELAIGGLLNKQIATELGISEITVKVHKRRVM 180 +E + S + T+R +LTPRE EV+ LAIGGL NKQIA E+GISEIT KVHKRRVM Sbjct: 121 SEDGMASSQQKLELTARHHSLTPREGEVMLLAIGGLQNKQIAAEMGISEITAKVHKRRVM 180 Query: 181 DKMQTKTLADLVRAAERLQISSARQR 206 +KMQ ++L+DLVRAAERL I R R Sbjct: 181 EKMQVRSLSDLVRAAERLNIEKTRGR 206 >ref|YP_003611231.1| two component transcriptional regulator, LuxR family [Enterobacter cloacae subsp. cloacae ATCC 13047] gb|ADF60282.1| two component transcriptional regulator, LuxR family [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 201 Score = 221 bits (563), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 109/197 (55%), Positives = 143/197 (72%) Query: 5 VFVVDDDNMVRTALLRLLASAGYAAHGFASADEFLQARLPAVPCCLLLDMKMPGSDGFEV 64 ++VVDDD+ VR ++ LL SA A GF+SA+ FLQ R +P C++LDM+MP GFEV Sbjct: 1 MYVVDDDDAVRQSVTGLLESADLNAIGFSSAEAFLQHRFEDLPSCVILDMQMPTISGFEV 60 Query: 65 VRRLERRGDAIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIQDERLLGAVEEALQIAERQ 124 L G IP+IF++G+GTIP +V+A+K GA+EFLTKP++ L+ A+E AL++AE Sbjct: 61 ADALRDSGREIPIIFLTGHGTIPMSVRAIKGGAYEFLTKPVESAALIDAIESALRLAENN 120 Query: 125 LQSRTEHAACTSRLETLTPREREVLELAIGGLLNKQIATELGISEITVKVHKRRVMDKMQ 184 EH A R +LTPRE EVL+LAI GLLNKQIA ELG+SEITVKVH+RRVM+KMQ Sbjct: 121 AVRNKEHYALKQRHMSLTPREHEVLQLAISGLLNKQIAAELGVSEITVKVHRRRVMEKMQ 180 Query: 185 TKTLADLVRAAERLQIS 201 +++A+LVR ERL S Sbjct: 181 VRSVAELVRVVERLSKS 197 >ref|ZP_08497658.1| LuxR family DNA-binding response regulator [Enterobacter hormaechei ATCC 49162] gb|EGK61503.1| LuxR family DNA-binding response regulator [Enterobacter hormaechei ATCC 49162] Length = 205 Score = 204 bits (518), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 100/184 (54%), Positives = 135/184 (73%) Query: 15 RTALLRLLASAGYAAHGFASADEFLQARLPAVPCCLLLDMKMPGSDGFEVVRRLERRGDA 74 R +++ LL SA A GF+SA+ FL +P C++LDM+MP GF+V L+ G Sbjct: 15 RQSVVGLLESADIHALGFSSAEAFLSYPFEDLPSCVILDMQMPTITGFDVADALKASGRE 74 Query: 75 IPVIFISGYGTIPTTVQAMKAGAHEFLTKPIQDERLLGAVEEALQIAERQLQSRTEHAAC 134 IP+IF++G+GTIP +V+A+K GA+EFLTKP++ L+G++E AL++A+ EH A Sbjct: 75 IPIIFLTGHGTIPMSVRAIKGGAYEFLTKPVESSALIGSIESALRLAQHNAARVKEHYAL 134 Query: 135 TSRLETLTPREREVLELAIGGLLNKQIATELGISEITVKVHKRRVMDKMQTKTLADLVRA 194 R +LTPREREVLELAI G LNKQIA ELG+SEITVKVH+RRVM+KMQ +++A+LVRA Sbjct: 135 KQRHMSLTPREREVLELAISGKLNKQIAAELGVSEITVKVHRRRVMEKMQVRSVAELVRA 194 Query: 195 AERL 198 ERL Sbjct: 195 VERL 198 >emb|CBK87544.1| Response regulator [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 205 Score = 202 bits (514), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 98/184 (53%), Positives = 135/184 (73%) Query: 15 RTALLRLLASAGYAAHGFASADEFLQARLPAVPCCLLLDMKMPGSDGFEVVRRLERRGDA 74 R +++RLL SA A GF+SA+ FL +P C++LDM++P GF+V L+ G Sbjct: 15 RQSVVRLLESADIHALGFSSAEAFLSHPFEDLPSCVILDMQLPTITGFDVADALKDSGRE 74 Query: 75 IPVIFISGYGTIPTTVQAMKAGAHEFLTKPIQDERLLGAVEEALQIAERQLQSRTEHAAC 134 IP+IF++G+GTIP +V+A+K GA+EFLTKP++ L+G++E AL++A+ EH A Sbjct: 75 IPIIFLTGHGTIPMSVRAIKGGAYEFLTKPVESSALIGSIESALRLAQHNAARVKEHYAL 134 Query: 135 TSRLETLTPREREVLELAIGGLLNKQIATELGISEITVKVHKRRVMDKMQTKTLADLVRA 194 R +LTPRE EVLELA+ G LNKQIA ELG+SEITVKVH+RRVM+KMQ +++A+LVRA Sbjct: 135 KQRHLSLTPREHEVLELAVSGKLNKQIAAELGVSEITVKVHRRRVMEKMQVRSVAELVRA 194 Query: 195 AERL 198 ERL Sbjct: 195 VERL 198