BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0170.p (165 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777855.1| RNA polymerase sigma-70 factor, ECF subfamil... 325 2e-87 ref|YP_001666991.1| ECF subfamily RNA polymerase sigma-24 factor... 185 2e-45 ref|NP_250602.1| ECF sigma factor, FemI [Pseudomonas aeruginosa ... 180 8e-44 ref|YP_001355175.1| ECF subfamily RNA polymerase sigma factor [J... 179 1e-43 ref|ZP_07043513.1| RNA polymerase, sigma-24 subunit, ECF subfami... 179 2e-43 ref|YP_001564294.1| ECF subfamily RNA polymerase sigma-24 factor... 178 2e-43 ref|YP_004488850.1| ECF subfamily RNA polymerase sigma-24 factor... 178 2e-43 gb|EGW61394.1| RNA polymerase, sigma-24 subunit, ECF subfamily [... 177 4e-43 ref|YP_004486944.1| ECF subfamily RNA polymerase sigma-24 factor... 177 6e-43 gb|AAT50142.1| PA1912 [synthetic construct] 177 7e-43 >ref|YP_003777855.1| RNA polymerase sigma-70 factor, ECF subfamily (sigma-24) transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65947.1| RNA polymerase sigma-70 factor, ECF subfamily (sigma-24) transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 169 Score = 325 bits (832), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 165/165 (100%), Positives = 165/165 (100%) Query: 1 MSPAEAHQEIGGLYREHHGWLVAWLSRRLACRHLGADLAQDTFVRLLGHRPPPDLREPRA 60 MSPAEAHQEIGGLYREHHGWLVAWLSRRLACRHLGADLAQDTFVRLLGHRPPPDLREPRA Sbjct: 5 MSPAEAHQEIGGLYREHHGWLVAWLSRRLACRHLGADLAQDTFVRLLGHRPPPDLREPRA 64 Query: 61 YLTTIAKGLVASHLRRRQLETAYLEALAALPEPSQPSAEERLLVLDTLCEIDRILDQLPA 120 YLTTIAKGLVASHLRRRQLETAYLEALAALPEPSQPSAEERLLVLDTLCEIDRILDQLPA Sbjct: 65 YLTTIAKGLVASHLRRRQLETAYLEALAALPEPSQPSAEERLLVLDTLCEIDRILDQLPA 124 Query: 121 RARQVFLLAQLDGLPYASIAGLLGISLSTVKRHMVLALRHCLAAL 165 RARQVFLLAQLDGLPYASIAGLLGISLSTVKRHMVLALRHCLAAL Sbjct: 125 RARQVFLLAQLDGLPYASIAGLLGISLSTVKRHMVLALRHCLAAL 169 >ref|YP_001666991.1| ECF subfamily RNA polymerase sigma-24 factor [Pseudomonas putida GB-1] gb|ABY96655.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Pseudomonas putida GB-1] Length = 167 Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 95/165 (57%), Positives = 116/165 (70%) Query: 1 MSPAEAHQEIGGLYREHHGWLVAWLSRRLACRHLGADLAQDTFVRLLGHRPPPDLREPRA 60 MS + ++G LYR HH WL WL +RL C+H ADLAQDTF+RLLG LREPRA Sbjct: 1 MSSLPHNAQVGELYRGHHSWLRGWLFKRLECQHQAADLAQDTFLRLLGRDTLNGLREPRA 60 Query: 61 YLTTIAKGLVASHLRRRQLETAYLEALAALPEPSQPSAEERLLVLDTLCEIDRILDQLPA 120 +L T+AKGLV H RR LE A+L++LAALPEP PSAE R+LVL+TL EIDR+LD L Sbjct: 61 FLATVAKGLVVDHYRRLSLERAWLDSLAALPEPEAPSAEARVLVLETLVEIDRMLDGLKP 120 Query: 121 RARQVFLLAQLDGLPYASIAGLLGISLSTVKRHMVLALRHCLAAL 165 + R FLL+QLDGL Y IA LG+SLS+V+++M A HC L Sbjct: 121 KVRSAFLLSQLDGLTYPQIAEQLGLSLSSVQQYMTQAFGHCYRVL 165 >ref|NP_250602.1| ECF sigma factor, FemI [Pseudomonas aeruginosa PAO1] ref|ZP_01365265.1| hypothetical protein PaerPA_01002381 [Pseudomonas aeruginosa PACS2] ref|YP_791327.1| ECF subfamily RNA polymerase sigma-70 factor [Pseudomonas aeruginosa UCBPP-PA14] ref|YP_002440998.1| putative sigma-70 factor, ECF subfamily [Pseudomonas aeruginosa LESB58] ref|ZP_04928328.1| hypothetical protein PACG_00884 [Pseudomonas aeruginosa C3719] ref|ZP_04933627.1| hypothetical protein PA2G_00951 [Pseudomonas aeruginosa 2192] ref|ZP_06879156.1| RNA polymerase sigma factor [Pseudomonas aeruginosa PAb1] ref|ZP_07797170.1| putative sigma-70 factor, ECF subfamily [Pseudomonas aeruginosa 39016] gb|AAG05300.1|AE004617_4 ECF sigma factor, FemI [Pseudomonas aeruginosa PAO1] gb|ABJ11100.1| probable sigma-70 factor, ECF subfamily [Pseudomonas aeruginosa UCBPP-PA14] gb|EAZ52447.1| hypothetical protein PACG_00884 [Pseudomonas aeruginosa C3719] gb|EAZ57746.1| hypothetical protein PA2G_00951 [Pseudomonas aeruginosa 2192] emb|CAW28139.1| probable sigma-70 factor, ECF subfamily [Pseudomonas aeruginosa LESB58] gb|EFQ42266.1| putative sigma-70 factor, ECF subfamily [Pseudomonas aeruginosa 39016] gb|EGM12325.1| RNA polymerase sigma factor [Pseudomonas aeruginosa 152504] gb|EGM14173.1| RNA polymerase sigma factor [Pseudomonas aeruginosa 138244] dbj|GAA17469.1| probable sigma-70 factor, ECF subfamily [Pseudomonas aeruginosa NCMG1179] gb|AEO75612.1| putative sigma-70 factor, ECF subfamily [Pseudomonas aeruginosa M18] dbj|BAK89681.1| ECF subfamily RNA polymerase sigma-70 factor [Pseudomonas aeruginosa NCGM2.S1] Length = 168 Score = 180 bits (456), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 94/164 (57%), Positives = 115/164 (70%), Gaps = 2/164 (1%) Query: 1 MSPAEA--HQEIGGLYREHHGWLVAWLSRRLACRHLGADLAQDTFVRLLGHRPPPDLREP 58 M PA+A H + LY++HHGWL WL RRL C ADLAQDTF RLL R D REP Sbjct: 1 MPPADASLHDAVSHLYQDHHGWLQGWLRRRLGCAENAADLAQDTFARLLASRRVLDAREP 60 Query: 59 RAYLTTIAKGLVASHLRRRQLETAYLEALAALPEPSQPSAEERLLVLDTLCEIDRILDQL 118 RAYLTT+AKGL+ + +R+ LE AYL+ALA LPE P E+RL+VL+TL E+D +L L Sbjct: 61 RAYLTTVAKGLMINWFQRQSLERAYLDALANLPEDLAPPPEQRLMVLETLHEVDALLGSL 120 Query: 119 PARARQVFLLAQLDGLPYASIAGLLGISLSTVKRHMVLALRHCL 162 P R RQ FLLAQ++GL Y +IA LG+SL +VKR+M A R CL Sbjct: 121 PDRVRQAFLLAQIEGLKYEAIAERLGVSLGSVKRYMQQAFRQCL 164 >ref|YP_001355175.1| ECF subfamily RNA polymerase sigma factor [Janthinobacterium sp. Marseille] gb|ABR88884.1| RNA polymerase sigma-70 factor, ECF subfamily [Janthinobacterium sp. Marseille] Length = 168 Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 87/156 (55%), Positives = 114/156 (73%) Query: 7 HQEIGGLYREHHGWLVAWLSRRLACRHLGADLAQDTFVRLLGHRPPPDLREPRAYLTTIA 66 HQE+ LY +HHGWL WL ++L ADLAQDTF+R+LG R ++EPRAYLTT+A Sbjct: 9 HQEVATLYGDHHGWLQGWLCKKLGNAFDAADLAQDTFIRILGSRDLSAIQEPRAYLTTVA 68 Query: 67 KGLVASHLRRRQLETAYLEALAALPEPSQPSAEERLLVLDTLCEIDRILDQLPARARQVF 126 KGLV + +R+ LE AYLEALA LPEP PSAE+R ++L+TL EID +LD L AR ++VF Sbjct: 69 KGLVINWYQRQALERAYLEALALLPEPQAPSAEQRYIILETLYEIDAMLDALQARVKRVF 128 Query: 127 LLAQLDGLPYASIAGLLGISLSTVKRHMVLALRHCL 162 LL+Q++G+ Y IA + +S+ TVKR+M A HCL Sbjct: 129 LLSQIEGMKYEEIAVQMDVSVITVKRYMKQAFLHCL 164 >ref|ZP_07043513.1| RNA polymerase, sigma-24 subunit, ECF subfamily protein [Comamonas testosteroni S44] gb|EFI62675.1| RNA polymerase, sigma-24 subunit, ECF subfamily protein [Comamonas testosteroni S44] Length = 183 Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 89/158 (56%), Positives = 111/158 (70%) Query: 6 AHQEIGGLYREHHGWLVAWLSRRLACRHLGADLAQDTFVRLLGHRPPPDLREPRAYLTTI 65 +H+E+ LY +HHGWL WL R++ ADL QDTFVR+LG R PP L PRAYLTT+ Sbjct: 23 SHREVAALYTDHHGWLQGWLRRKVGNAFDAADLTQDTFVRILGVREPPRLESPRAYLTTV 82 Query: 66 AKGLVASHLRRRQLETAYLEALAALPEPSQPSAEERLLVLDTLCEIDRILDQLPARARQV 125 AKG++ + RR+ LE AYLEALA LPEP PS E R LVL+ L EID +LD LP R+ Sbjct: 83 AKGVLVNWCRRQALERAYLEALALLPEPEAPSPEHRALVLEALHEIDAMLDALPPLVRRT 142 Query: 126 FLLAQLDGLPYASIAGLLGISLSTVKRHMVLALRHCLA 163 FLL+QL+ + Y IA LG+SL++VKR+M A R CLA Sbjct: 143 FLLSQLEDMKYDDIASQLGVSLTSVKRYMAQAFRQCLA 180 >ref|YP_001564294.1| ECF subfamily RNA polymerase sigma-24 factor [Delftia acidovorans SPH-1] gb|ABX35909.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Delftia acidovorans SPH-1] Length = 168 Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 92/159 (57%), Positives = 113/159 (71%) Query: 7 HQEIGGLYREHHGWLVAWLSRRLACRHLGADLAQDTFVRLLGHRPPPDLREPRAYLTTIA 66 H+E LY HHGWL WL RRL ADLAQDTFVR+LG R ++EPRAYLTT+A Sbjct: 9 HREAASLYTAHHGWLQGWLRRRLGNGADAADLAQDTFVRILGVRDLAGVQEPRAYLTTVA 68 Query: 67 KGLVASHLRRRQLETAYLEALAALPEPSQPSAEERLLVLDTLCEIDRILDQLPARARQVF 126 KG++ + +R+ LE AYLEALAALPEP PS E+R LVL+TL EID +LD LP R+ F Sbjct: 69 KGVLVNWYKRQALERAYLEALAALPEPVAPSPEQRALVLETLHEIDAMLDALPPIVRRTF 128 Query: 127 LLAQLDGLPYASIAGLLGISLSTVKRHMVLALRHCLAAL 165 LL+QLDG+ Y IA L +SL++VKR+M A R CL A+ Sbjct: 129 LLSQLDGMKYEDIAQQLEVSLTSVKRYMAQAFRQCLVAM 167 >ref|YP_004488850.1| ECF subfamily RNA polymerase sigma-24 factor [Delftia sp. Cs1-4] gb|AEF90495.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Delftia sp. Cs1-4] Length = 168 Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 92/159 (57%), Positives = 113/159 (71%) Query: 7 HQEIGGLYREHHGWLVAWLSRRLACRHLGADLAQDTFVRLLGHRPPPDLREPRAYLTTIA 66 H+E LY HHGWL WL RRL ADLAQDTFVR+LG R ++EPRAYLTT+A Sbjct: 9 HREAASLYAAHHGWLQGWLRRRLGNGADAADLAQDTFVRILGVRDLAGVQEPRAYLTTVA 68 Query: 67 KGLVASHLRRRQLETAYLEALAALPEPSQPSAEERLLVLDTLCEIDRILDQLPARARQVF 126 KG++ + +R+ LE AYLEALAALPEP PS E+R LVL+TL EID +LD LP R+ F Sbjct: 69 KGVLVNWYKRQALERAYLEALAALPEPVAPSPEQRALVLETLHEIDAMLDALPPIVRRTF 128 Query: 127 LLAQLDGLPYASIAGLLGISLSTVKRHMVLALRHCLAAL 165 LL+QLDG+ Y IA L +SL++VKR+M A R CL A+ Sbjct: 129 LLSQLDGMKYEDIAQQLEVSLTSVKRYMAQAFRQCLVAM 167 >gb|EGW61394.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Dechlorosoma suillum PS] Length = 165 Score = 177 bits (449), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 96/153 (62%), Positives = 107/153 (69%), Gaps = 1/153 (0%) Query: 13 LYREHHGWLVAWLSRRLACRHLGADLAQDTFVRLLGHRPPPDLREPRAYLTTIAKGLVAS 72 LYR HHGWL WL R+L C H ADLAQDTF+RLLG R DL EPRA LT IAKGLV Sbjct: 12 LYRAHHGWLHGWLRRQLGCSHQAADLAQDTFLRLLGRRSA-DLGEPRALLTHIAKGLVVD 70 Query: 73 HLRRRQLETAYLEALAALPEPSQPSAEERLLVLDTLCEIDRILDQLPARARQVFLLAQLD 132 H RRR +E AYLE LA LPE PS E RLLVL+ LC +D +L LP R R++FLL+QLD Sbjct: 71 HWRRRAVEQAYLEVLARLPEAQAPSPETRLLVLEALCRVDAMLAGLPPRTREIFLLSQLD 130 Query: 133 GLPYASIAGLLGISLSTVKRHMVLALRHCLAAL 165 GL Y +IA LG SL TVKRHM C+AAL Sbjct: 131 GLTYGAIAERLGTSLITVKRHMRNGFIACMAAL 163 >ref|YP_004486944.1| ECF subfamily RNA polymerase sigma-24 factor [Delftia sp. Cs1-4] gb|AEF88589.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Delftia sp. Cs1-4] Length = 171 Score = 177 bits (448), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 88/156 (56%), Positives = 116/156 (74%), Gaps = 1/156 (0%) Query: 7 HQEIGGLYREHHGWLVAWLSRRLACRHLGADLAQDTFVRLLGHRPP-PDLREPRAYLTTI 65 HQ + LY++HHGWL WL RRL AD AQDT+VR++ R ++REPRA+LTT+ Sbjct: 9 HQALAHLYQQHHGWLRTWLQRRLGHAGDAADFAQDTYVRVMESRTELSEIREPRAFLTTV 68 Query: 66 AKGLVASHLRRRQLETAYLEALAALPEPSQPSAEERLLVLDTLCEIDRILDQLPARARQV 125 AK ++A+HLRRR++E AYL+ LA PEP PS EER +VL+TLCE+DR+LD LP + R Sbjct: 69 AKRVMANHLRRREIERAYLDTLALQPEPLAPSPEERAIVLETLCELDRLLDGLPPKVRAA 128 Query: 126 FLLAQLDGLPYASIAGLLGISLSTVKRHMVLALRHC 161 FL AQLDG+ YA IA LL +S+S+VK++M A+RHC Sbjct: 129 FLHAQLDGMAYAEIALLLQVSVSSVKQYMARAIRHC 164 >gb|AAT50142.1| PA1912 [synthetic construct] Length = 169 Score = 177 bits (448), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 93/164 (56%), Positives = 114/164 (69%), Gaps = 2/164 (1%) Query: 1 MSPAEA--HQEIGGLYREHHGWLVAWLSRRLACRHLGADLAQDTFVRLLGHRPPPDLREP 58 M PA+A H + LY++HHGWL WL RR C ADLAQDTF RLL R D REP Sbjct: 1 MPPADASLHDAVSHLYQDHHGWLQGWLRRRPGCAENAADLAQDTFARLLASRRVLDAREP 60 Query: 59 RAYLTTIAKGLVASHLRRRQLETAYLEALAALPEPSQPSAEERLLVLDTLCEIDRILDQL 118 RAYLTT+AKGL+ + +R+ LE AYL+ALA LPE P E+RL+VL+TL E+D +L L Sbjct: 61 RAYLTTVAKGLMINWFQRQSLERAYLDALANLPEDLAPPPEQRLMVLETLHEVDALLGSL 120 Query: 119 PARARQVFLLAQLDGLPYASIAGLLGISLSTVKRHMVLALRHCL 162 P R RQ FLLAQ++GL Y +IA LG+SL +VKR+M A R CL Sbjct: 121 PDRVRQAFLLAQIEGLKYEAIAERLGVSLGSVKRYMQQAFRQCL 164