BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0167.p (235 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777852.1| hypothetical protein Hsero_4478 [Herbaspiril... 473 e-131 ref|ZP_04947234.1| hypothetical protein BDAG_03202 [Burkholderia... 229 3e-58 ref|YP_004114229.1| gluconate 2-dehydrogenase [Pantoea sp. At-9b... 224 9e-57 ref|ZP_03569632.1| gluconate 2-dehydrogenase subunit 3 (gadhsubu... 222 3e-56 ref|YP_001478365.1| gluconate 2-dehydrogenase [Serratia proteama... 222 4e-56 ref|YP_003933127.1| gluconate 2-dehydrogenase subunit 3 precurso... 221 8e-56 ref|YP_004349005.1| putative gluconate 2-dehydrogenase subunit 3... 219 3e-55 ref|YP_003776732.1| hypothetical protein Hsero_3343 [Herbaspiril... 219 4e-55 ref|YP_004500510.1| gluconate 2-dehydrogenase [Serratia sp. AS12... 218 4e-55 ref|YP_001888380.1| gluconate 2-dehydrogenase [Burkholderia phyt... 218 6e-55 >ref|YP_003777852.1| hypothetical protein Hsero_4478 [Herbaspirillum seropedicae SmR1] gb|ADJ65944.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 235 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 231/235 (98%), Positives = 232/235 (98%) Query: 1 MKKISISPNRRRFLRGALTAAPVAALVVTAGSLTAKAEGPSSGQPYQPSFFNRDEFALLS 60 MKKISISP+RRRFLRGALTAAPVAAL VTAGSLTAKAEGPS QPYQPSFFNRDEFALLS Sbjct: 1 MKKISISPDRRRFLRGALTAAPVAALAVTAGSLTAKAEGPSPDQPYQPSFFNRDEFALLS 60 Query: 61 ALADTLIPADDTGPGALQAGVPEFIDAQMNTPYGQGQLWYMQGPFTPDAPPEFGYQLPYP 120 ALADTLIPADDTGPGALQAGVPEFIDAQMNTPYGQGQLWYMQGPFTPDAPPEFGYQLPYP Sbjct: 61 ALADTLIPADDTGPGALQAGVPEFIDAQMNTPYGQGQLWYMQGPFTPDAPPEFGYQLPYP 120 Query: 121 PRELYKKGLAEFDAAIRQQYGHGYVELNTQQREKMMAEFEKGEQGSLKMATIPPSALFNL 180 PRELYKKGLAEFDAAIRQQYGHGYVELNTQQREKMMAEFEKGEQGSLKMATIPPSALFNL Sbjct: 121 PRELYKKGLAEFDAAIRQQYGHGYVELNTQQREKMMAEFEKGEQGSLKMATIPPSALFNL 180 Query: 181 LLQNVHEGYFCDPTDGGNRGMGSWKMIGFPGARADYYDWVDQYGKSYPLPPISRG 235 LLQNVHEGYFCDPTDGGNRGMGSWKMIGFPGARADYYDWVDQYGKSYPLPPISRG Sbjct: 181 LLQNVHEGYFCDPTDGGNRGMGSWKMIGFPGARADYYDWVDQYGKSYPLPPISRG 235 >ref|ZP_04947234.1| hypothetical protein BDAG_03202 [Burkholderia dolosa AUO158] gb|EAY70405.1| hypothetical protein BDAG_03202 [Burkholderia dolosa AUO158] Length = 293 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 117/236 (49%), Positives = 152/236 (64%), Gaps = 17/236 (7%) Query: 9 NRRRFLRGALTAAPVAALV-----------VTAGSLTAKAEGPSSGQPYQPSFFNRDEFA 57 +RRRFLR ++ P+A++ TAG+ A A+G S PY+P+FF+ E+A Sbjct: 58 SRRRFLRTSVALVPIASVAGCDLRSSSPSATTAGNAPAAADGDRS--PYKPTFFDAKEWA 115 Query: 58 LLSALADTLIPADDTGPGALQAGVPEFIDAQMNTPYGQGQLWYMQGPFTPDAPPEFGYQL 117 + A D LIPAD GPGAL+AGVPEFID QM+TPY G WYM+GPF AP E GYQL Sbjct: 116 FVQAAVDRLIPADAEGPGALEAGVPEFIDRQMDTPYAHGATWYMRGPFQQGAP-ELGYQL 174 Query: 118 PYPPRELYKKGLAEFDAAIRQQYGHGYVELNTQQREKMMAEFEKGEQGSLKMATIPPSAL 177 PR+LY+ G+A + + G + +L+ R+ ++ E EKG S ++ +PP Sbjct: 175 KLVPRDLYRLGIAAVNRYCEKTRGKAFADLDAPTRDAVLGELEKG---SAQIDDVPPGVF 231 Query: 178 FNLLLQNVHEGYFCDPTDGGNRGMGSWKMIGFPGARADYYDWVDQYGKSYPLPPIS 233 F LLLQN EGYFCDP GGNRGM +WKMIGFPGARAD+ D+V+Q GK YP P+S Sbjct: 232 FGLLLQNTREGYFCDPVHGGNRGMAAWKMIGFPGARADFMDFVNQNGKPYPYGPVS 287 >ref|YP_004114229.1| gluconate 2-dehydrogenase [Pantoea sp. At-9b] gb|ADU67673.1| Gluconate 2-dehydrogenase (acceptor) [Pantoea sp. At-9b] Length = 244 Score = 224 bits (570), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 115/233 (49%), Positives = 150/233 (64%), Gaps = 13/233 (5%) Query: 9 NRRRFLRGALTAAPVAALVVTA-GSLTAKAEGPSSGQP--------YQPSFFNRDEFALL 59 RR FL +T AP A+ TA G+L A ++ QP YQP++F +EFAL+ Sbjct: 9 TRRDFLLRTITLAPAMAVGSTAMGALVAPMAAGAAEQPGAPQKARDYQPTWFTAEEFALI 68 Query: 60 SALADTLIPADDTGPGALQAGVPEFIDAQMNTPYGQGQLWYMQGPFTPDAPPEFGYQLPY 119 +A LIP D+ GPGAL+AGVPEFID QMNTPY G WYMQGPF PD P E GYQL Sbjct: 69 TAAVARLIPNDERGPGALEAGVPEFIDRQMNTPYATGSNWYMQGPFNPDLPKELGYQLSL 128 Query: 120 PPRELYKKGLAEFDAAIRQQYGHGYVELNTQQREKMMAEFEKGEQGSLKMATIPPSALFN 179 P+++Y+ GLAE D +QQ+G + EL+ +Q++ ++ +FE G+ +P F+ Sbjct: 129 VPQQIYRLGLAEADNWSKQQHGKVFAELSGEQQDALLGDFESGKAA---FTQLPAKTFFS 185 Query: 180 LLLQNVHEGYFCDPTDGGNRGMGSWKMIGFPGARADYYDWVDQYGKSYPLPPI 232 LLQN EGYF DP GGN+GM WK+IGFPGARADY DWV++ G+ YP P + Sbjct: 186 FLLQNTREGYFSDPIHGGNQGMVGWKLIGFPGARADYMDWVER-GERYPFPSV 237 >ref|ZP_03569632.1| gluconate 2-dehydrogenase subunit 3 (gadhsubunit 3) (ga 2-dh subunit 3) [Burkholderia multivorans CGD2M] ref|ZP_03576273.1| gluconate 2-dehydrogenase subunit 3 (gadhsubunit 3) (ga 2-dh subunit 3) [Burkholderia multivorans CGD2] ref|ZP_03588174.1| gluconate 2-dehydrogenase subunit 3 (gadhsubunit 3) (ga 2-dh subunit 3) [Burkholderia multivorans CGD1] gb|EED97372.1| gluconate 2-dehydrogenase subunit 3 (gadhsubunit 3) (ga 2-dh subunit 3) [Burkholderia multivorans CGD1] gb|EEE09616.1| gluconate 2-dehydrogenase subunit 3 (gadhsubunit 3) (ga 2-dh subunit 3) [Burkholderia multivorans CGD2] gb|EEE15539.1| gluconate 2-dehydrogenase subunit 3 (gadhsubunit 3) (ga 2-dh subunit 3) [Burkholderia multivorans CGD2M] Length = 246 Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 116/245 (47%), Positives = 147/245 (60%), Gaps = 17/245 (6%) Query: 1 MKKISISPN-RRRFLRGALTAAPVAALV-----------VTAGSLTAKAEGPSSGQPYQP 48 M S PN RRRFLR ++ P+A++ TAG +A A + PY+P Sbjct: 1 MSTPSDKPNSRRRFLRTSVALVPIASVAGCDLRSSPSSATTAGHASA-ASADAERSPYKP 59 Query: 49 SFFNRDEFALLSALADTLIPADDTGPGALQAGVPEFIDAQMNTPYGQGQLWYMQGPFTPD 108 +FF+ E+A + A D LIPAD GPGAL AGVPEFID QM TPY G WYMQ PF Sbjct: 60 TFFDAKEWAFVQAAVDRLIPADAEGPGALDAGVPEFIDRQMETPYAHGATWYMQAPFQ-Q 118 Query: 109 APPEFGYQLPYPPRELYKKGLAEFDAAIRQQYGHGYVELNTQQREKMMAEFEKGEQGSLK 168 PE GYQL PR++Y+ G+A D + +G + +L+ R+ ++ EKG S Sbjct: 119 GVPELGYQLKLVPRDVYRLGIAAVDRYCEKTHGKAFADLDAATRDAVLGALEKG---SAP 175 Query: 169 MATIPPSALFNLLLQNVHEGYFCDPTDGGNRGMGSWKMIGFPGARADYYDWVDQYGKSYP 228 + +PP F LLQN EGYFCDP GGNRGM +WKMIGFPGARAD+ D+V+Q GK YP Sbjct: 176 IDDVPPGVFFGQLLQNTREGYFCDPVHGGNRGMAAWKMIGFPGARADFMDFVNQNGKPYP 235 Query: 229 LPPIS 233 P+S Sbjct: 236 YGPVS 240 >ref|YP_001478365.1| gluconate 2-dehydrogenase [Serratia proteamaculans 568] gb|ABV41237.1| Gluconate 2-dehydrogenase (acceptor) [Serratia proteamaculans 568] Length = 245 Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 111/239 (46%), Positives = 148/239 (61%), Gaps = 10/239 (4%) Query: 1 MKKISISPNRRRFLRGALTAAPVAAL------VVTAGSLTAKAEGPSSGQPYQPSFFNRD 54 M + +RR FL ++T P A + +TA A YQP+FF + Sbjct: 5 MSDDKTNNSRRDFLLKSMTLIPAAVIGGSGVSALTASIPAVAATDTPKPSDYQPTFFTPE 64 Query: 55 EFALLSALADTLIPADDTGPGALQAGVPEFIDAQMNTPYGQGQLWYMQGPFTPDAPPEFG 114 E+A + A LIPADD GPGAL+AGVPEFID QMNTPY G +WYMQGPF PD P E G Sbjct: 65 EWAFVKAAVARLIPADDRGPGALEAGVPEFIDRQMNTPYATGSIWYMQGPFNPDVPKEMG 124 Query: 115 YQLPYPPRELYKKGLAEFDAAIRQQYGHGYVELNTQQREKMMAEFEKGEQGSLKMATIPP 174 YQLP P+++Y G+A+ DA ++ G + EL+ Q++ ++ +FE GE + A +P Sbjct: 125 YQLPLVPKQIYNLGIADADAYCKKTAGKPFAELDVAQQDALLQKFESGEA---EFAQLPA 181 Query: 175 SALFNLLLQNVHEGYFCDPTDGGNRGMGSWKMIGFPGARADYYDWVDQYGKSYPLPPIS 233 F+ LLQN EG+F DP GGN+ M WK+I FPGARAD+ DWV++ G+ YPLPP+S Sbjct: 182 KLFFSYLLQNTREGFFSDPIHGGNKDMVGWKLINFPGARADFMDWVER-GERYPLPPVS 239 >ref|YP_003933127.1| gluconate 2-dehydrogenase subunit 3 precursor [Pantoea vagans C9-1] gb|ADO11678.1| Gluconate 2-dehydrogenase subunit 3 precursor [Pantoea vagans C9-1] Length = 244 Score = 221 bits (562), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 112/234 (47%), Positives = 155/234 (66%), Gaps = 13/234 (5%) Query: 9 NRRRFLRGALTAAPVAALVVTA-GSLT-----AKAE---GPSSGQPYQPSFFNRDEFALL 59 +RR FL +T AP A+ TA G+L+ AE GP + YQP++F +EFA + Sbjct: 9 SRRDFLLKTITLAPAMAVGSTAMGALSLPLAVQAAETPAGPQQARDYQPAWFTAEEFAFI 68 Query: 60 SALADTLIPADDTGPGALQAGVPEFIDAQMNTPYGQGQLWYMQGPFTPDAPPEFGYQLPY 119 +A LIP+D+ GPGAL+AGVPEFID QMNTPY G WYMQGPF PD P E GYQLP Sbjct: 69 TAAVARLIPSDERGPGALEAGVPEFIDRQMNTPYATGSNWYMQGPFNPDLPKELGYQLPL 128 Query: 120 PPRELYKKGLAEFDAAIRQQYGHGYVELNTQQREKMMAEFEKGEQGSLKMATIPPSALFN 179 P+++Y+ GLA+ D+ +QQ+G + +L+ +Q++ ++ + E GS + + +P F+ Sbjct: 129 VPQQIYRLGLADADSYSKQQHGKVFAQLSGEQQDALL---QAMESGSAEFSQLPSKVFFS 185 Query: 180 LLLQNVHEGYFCDPTDGGNRGMGSWKMIGFPGARADYYDWVDQYGKSYPLPPIS 233 LLQN EG+F DP GGN+GM WK+I FPGARAD+ DWV++ G+ YP P +S Sbjct: 186 FLLQNTREGFFSDPIHGGNQGMVGWKLINFPGARADFMDWVER-GERYPFPSVS 238 >ref|YP_004349005.1| putative gluconate 2-dehydrogenase subunit 3 [Burkholderia gladioli BSR3] gb|AEA63493.1| putative gluconate 2-dehydrogenase subunit 3 [Burkholderia gladioli BSR3] Length = 242 Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 114/234 (48%), Positives = 144/234 (61%), Gaps = 16/234 (6%) Query: 9 NRRRFLRGALTAAPVAALVVTAGSLTAKAEGPSSGQ---------PYQPSFFNRDEFALL 59 +RRRFL+ ++ P A+L AG + EG + Q PY+P FF+ E+A + Sbjct: 10 SRRRFLQTSIALVPAASL---AGCDLGRHEGSAPAQSAGARADAGPYKPRFFDAAEWAFV 66 Query: 60 SALADTLIPADDTGPGALQAGVPEFIDAQMNTPYGQGQLWYMQGPFTPDAPPEFGYQLPY 119 A D LIPAD GPGAL+ GVPEFID QM TPY G WYMQGPF AP E GYQL Sbjct: 67 QAACDRLIPADAEGPGALELGVPEFIDRQMETPYAHGATWYMQGPFQQGAP-ELGYQLKL 125 Query: 120 PPRELYKKGLAEFDAAIRQQYGHGYVELNTQQREKMMAEFEKGEQGSLKMATIPPSALFN 179 PR++Y+ G+A D R YG + EL+ R+ ++ E G+ L++ +P F Sbjct: 126 VPRDIYRLGIAAVDRYSRTAYGKPFAELDAATRDTVLGALEAGK---LELGDVPAKVFFG 182 Query: 180 LLLQNVHEGYFCDPTDGGNRGMGSWKMIGFPGARADYYDWVDQYGKSYPLPPIS 233 LLQN EGYFCDP GGNRGM +WKMIGFPGARAD+ D+V+Q GK YP P+S Sbjct: 183 QLLQNTREGYFCDPVHGGNRGMAAWKMIGFPGARADFMDFVNQDGKPYPYGPVS 236 >ref|YP_003776732.1| hypothetical protein Hsero_3343 [Herbaspirillum seropedicae SmR1] gb|ADJ64824.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 219 bits (557), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 109/230 (47%), Positives = 142/230 (61%), Gaps = 9/230 (3%) Query: 10 RRRFLRGALTAAPVAALV----VTAGSLTAKAEGPSSGQP--YQPSFFNRDEFALLSALA 63 RRRFLR L P A+ + A S A A+ G+P Y P++F E+A L+A Sbjct: 8 RRRFLRQVLAIVPAASTLGGATTVAVSQAAMADSSEPGKPRAYTPTYFTAAEWAFLNAAV 67 Query: 64 DTLIPADDTGPGALQAGVPEFIDAQMNTPYGQGQLWYMQGPFTPDAPPEFGYQLPYPPRE 123 D LIP+D G GAL+ GVPEFID QM TPYG G+LWYMQGPF PD+ PE GYQL PR+ Sbjct: 68 DHLIPSDQYGAGALETGVPEFIDRQMETPYGAGKLWYMQGPFHPDSVPELGYQLSLVPRD 127 Query: 124 LYKKGLAEFDAAIRQQYGHGYVELNTQQREKMMAEFEKGEQGSLKMATIPPSALFNLLLQ 183 +Y++G+A + + +G + EL+ + K + + + G + T+P FN +L Sbjct: 128 IYRQGIAACNDWCSKNHGKVFAELD---KAKQLEVLKMMDGGKISFETVPAKTFFNFMLG 184 Query: 184 NVHEGYFCDPTDGGNRGMGSWKMIGFPGARADYYDWVDQYGKSYPLPPIS 233 N EGYF DP GGN+ MG WKM+GFPGARAD+ DWVDQY YP P+S Sbjct: 185 NTKEGYFADPMYGGNQKMGGWKMVGFPGARADFADWVDQYNVKYPYGPVS 234 >ref|YP_004500510.1| gluconate 2-dehydrogenase [Serratia sp. AS12] ref|YP_004505463.1| gluconate 2-dehydrogenase [Serratia sp. AS9] gb|AEF45202.1| Gluconate 2-dehydrogenase (acceptor) [Serratia sp. AS9] gb|AEF50153.1| Gluconate 2-dehydrogenase (acceptor) [Serratia sp. AS12] gb|AEG27860.1| Gluconate 2-dehydrogenase (acceptor) [Serratia sp. AS13] Length = 239 Score = 218 bits (556), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 109/240 (45%), Positives = 150/240 (62%), Gaps = 14/240 (5%) Query: 1 MKKISISPNRRRFLRGALTAAPVAAL-------VVTAGSLTAKAEGPSSGQPYQPSFFNR 53 M + +RR FL ++T P A + + T A + P+ YQP+FF Sbjct: 1 MSDDKTNNSRRDFLLKSMTLIPAAVIGGSGVTALTTPMPAVAATDTPTD---YQPTFFTP 57 Query: 54 DEFALLSALADTLIPADDTGPGALQAGVPEFIDAQMNTPYGQGQLWYMQGPFTPDAPPEF 113 +E+A + A A LIPADD GPGAL+AGVPEFID QMNTPY G +WYMQGPF PD P E Sbjct: 58 EEWAFIKAAAARLIPADDRGPGALEAGVPEFIDRQMNTPYATGSIWYMQGPFNPDVPKEM 117 Query: 114 GYQLPYPPRELYKKGLAEFDAAIRQQYGHGYVELNTQQREKMMAEFEKGEQGSLKMATIP 173 GYQLP P+++Y G+++ DA ++ G + EL+ Q++ ++ +FE GE + + +P Sbjct: 118 GYQLPLVPKQIYNLGISDADAYCKKTAGKPFAELDAAQQDALLQKFESGEA---EFSQLP 174 Query: 174 PSALFNLLLQNVHEGYFCDPTDGGNRGMGSWKMIGFPGARADYYDWVDQYGKSYPLPPIS 233 F+ LLQN EG+F DP GGN+ M WK+I FPGARAD+ DWV++ G+ YP PP+S Sbjct: 175 AKLFFSYLLQNTREGFFSDPIHGGNKDMVGWKLINFPGARADFMDWVER-GERYPFPPVS 233 >ref|YP_001888380.1| gluconate 2-dehydrogenase [Burkholderia phytofirmans PsJN] gb|ACD19010.1| Gluconate 2-dehydrogenase (acceptor) [Burkholderia phytofirmans PsJN] Length = 246 Score = 218 bits (555), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 114/237 (48%), Positives = 143/237 (60%), Gaps = 16/237 (6%) Query: 9 NRRRFLRGALTAAPVAAL--VVTAGSLTAKAEGPS----------SGQPYQPSFFNRDEF 56 +RR FLR A+ P L S T A G S SG Y+P FF+ E+ Sbjct: 8 SRRGFLRTAIALVPAGTLAGCEVKQSTTTSAPGSSEGADANAGRASGVDYKPHFFDAKEW 67 Query: 57 ALLSALADTLIPADDTGPGALQAGVPEFIDAQMNTPYGQGQLWYMQGPFTPDAPPEFGYQ 116 A + A D LIP+D GPGA++AGVPEFID QM+TPY G LWYMQGPFT A PE GYQ Sbjct: 68 AFIHAAVDRLIPSDSEGPGAVEAGVPEFIDRQMDTPYAHGALWYMQGPFTQGA-PELGYQ 126 Query: 117 LPYPPRELYKKGLAEFDAAIRQQYGHGYVELNTQQREKMMAEFEKGEQGSLKMATIPPSA 176 L PR+LY+ G+A +A + Y H + L+ R+ ++ EK G++ + +P Sbjct: 127 LKLVPRDLYRLGIAAINAYCTKTYAHPFDALDPATRDTVLGALEK---GNVDLDNVPAGV 183 Query: 177 LFNLLLQNVHEGYFCDPTDGGNRGMGSWKMIGFPGARADYYDWVDQYGKSYPLPPIS 233 F LLQN EGYFCDP GGNR MG WKMIGFPGARAD+ D+V+Q G +YP P+S Sbjct: 184 FFGQLLQNTREGYFCDPIHGGNRDMGGWKMIGFPGARADFMDFVNQNGAAYPYGPVS 240