BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0082.p (339 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777782.1| cell cycle control ATPase [Herbaspirillum se... 666 0.0 ref|ZP_06053532.1| tRNA(Cytosine32)-2-thiocytidine synthetase [G... 406 e-111 ref|ZP_01950923.1| conserved hypothetical protein [Vibrio choler... 400 e-109 gb|EGS69149.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vi... 400 e-109 ref|ZP_04410950.1| tRNA(Cytosine32)-2-thiocytidine synthetase [V... 400 e-109 ref|YP_004566281.1| TtcA [Vibrio anguillarum 775] >gi|335341956|... 399 e-109 ref|ZP_04418888.1| tRNA(Cytosine32)-2-thiocytidine synthetase [V... 399 e-109 gb|AEA78499.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibri... 399 e-109 ref|NP_231075.1| C32 tRNA thiolase [Vibrio cholerae O1 biovar El... 399 e-109 ref|ZP_01682729.1| conserved hypothetical protein [Vibrio choler... 399 e-109 >ref|YP_003777782.1| cell cycle control ATPase [Herbaspirillum seropedicae SmR1] gb|ADJ65874.1| ATPase of the PP-loop superfamily implicated in cell cycle control protein [Herbaspirillum seropedicae SmR1] Length = 320 Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/320 (99%), Positives = 320/320 (100%) Query: 20 MNDMAAAVPLSDPIQADELAQAGSGPAGQSEVTAPGSRRFELLQKNIRRLTGRAIADFDM 79 MNDMAAAVPLSDPIQADELAQAGSGPAGQSEVTAPGSRRFELLQKNIRRLTGRAIADFDM Sbjct: 1 MNDMAAAVPLSDPIQADELAQAGSGPAGQSEVTAPGSRRFELLQKNIRRLTGRAIADFDM 60 Query: 80 IRDGDVIMACMSGGADSYTMLDTLRYLQSVAPVKFEIIAVNLDQKQPGFPEHILPEYFER 139 IRDGDVIMACMSGGADSYTMLDTLRYLQSVAPVKFEIIAVNLDQKQPGFPEHILPEYFER Sbjct: 61 IRDGDVIMACMSGGADSYTMLDTLRYLQSVAPVKFEIIAVNLDQKQPGFPEHILPEYFER 120 Query: 140 IGVRYRIVEEDTYSIVKDKIAPGKTTCSLCSRLRRGILYRVAKELGATKIALGHHRDDIL 199 IGVRYRIVEEDTYSIVKDKIAPGKTTCSLCSRLRRGILYRVAKELGATKIALGHHRDDIL Sbjct: 121 IGVRYRIVEEDTYSIVKDKIAPGKTTCSLCSRLRRGILYRVAKELGATKIALGHHRDDIL 180 Query: 200 HTFMLNMFYGGKIKTMPPKLIADDGENVVIRPLAYVREPDIKKYAAAMQFPIIPCNLCGS 259 HTFMLNMFYGGKIKTMPPKLIADDGENVVIRPLAYVREPDIKKYAAAMQFPIIPCNLCGS Sbjct: 181 HTFMLNMFYGGKIKTMPPKLIADDGENVVIRPLAYVREPDIKKYAAAMQFPIIPCNLCGS 240 Query: 260 QPNLQRQAMREMLNEWEKTNPLWIKSMFTAMGNIAPSHMLDRSLFDFTHFTPGPGKEASG 319 QPNLQRQAMREMLNEWEKTNPLWIKSMFTAMGNIAPSHMLDRSLFDFTHFTPGPGKEASG Sbjct: 241 QPNLQRQAMREMLNEWEKTNPLWIKSMFTAMGNIAPSHMLDRSLFDFTHFTPGPGKEASG 300 Query: 320 DTLFDRDDKVEEGQSVINLL 339 DTLFDRDDKVE+GQSVINLL Sbjct: 301 DTLFDRDDKVEDGQSVINLL 320 >ref|ZP_06053532.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Grimontia hollisae CIP 101886] gb|EEY70847.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Grimontia hollisae CIP 101886] Length = 308 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 189/277 (68%), Positives = 218/277 (78%) Query: 50 EVTAPGSRRFELLQKNIRRLTGRAIADFDMIRDGDVIMACMSGGADSYTMLDTLRYLQSV 109 E+T LQK IRR G+AIADF+MI DGD IM C+SGG DSYTML+ L+ LQ Sbjct: 5 ELTKAQKYNLNKLQKRIRRNVGQAIADFNMIEDGDRIMVCLSGGKDSYTMLEILQSLQKS 64 Query: 110 APVKFEIIAVNLDQKQPGFPEHILPEYFERIGVRYRIVEEDTYSIVKDKIAPGKTTCSLC 169 AP+ FE++AVNLDQKQPGFPEH+LPEY E +GV Y+IVEEDTYSIVKDKI GKTTCSLC Sbjct: 65 APISFELVAVNLDQKQPGFPEHVLPEYLESLGVEYKIVEEDTYSIVKDKIPEGKTTCSLC 124 Query: 170 SRLRRGILYRVAKELGATKIALGHHRDDILHTFMLNMFYGGKIKTMPPKLIADDGENVVI 229 SRLRRGILYR AKELGATKIALGHHRDD+L T LNMFYGGK+K MPPKL++D+GE+VVI Sbjct: 125 SRLRRGILYRTAKELGATKIALGHHRDDMLETLFLNMFYGGKMKGMPPKLVSDNGEHVVI 184 Query: 230 RPLAYVREPDIKKYAAAMQFPIIPCNLCGSQPNLQRQAMREMLNEWEKTNPLWIKSMFTA 289 RPLAY RE DI++YA A FPIIPCNLCGSQPNLQRQ ++EML +W+K P I++MF A Sbjct: 185 RPLAYCREKDIERYAEAAAFPIIPCNLCGSQPNLQRQVIKEMLRDWDKRYPGRIETMFRA 244 Query: 290 MGNIAPSHMLDRSLFDFTHFTPGPGKEASGDTLFDRD 326 M N+ PSH+ D LFDF G G GDT FDR+ Sbjct: 245 MQNVVPSHLADFELFDFKSINQGSGVINGGDTAFDRE 281 >ref|ZP_01950923.1| conserved hypothetical protein [Vibrio cholerae 1587] ref|ZP_01958167.1| conserved hypothetical protein [Vibrio cholerae MZO-3] ref|ZP_01979837.1| conserved hypothetical protein [Vibrio cholerae MZO-2] ref|ZP_01983255.1| conserved hypothetical protein [Vibrio cholerae 623-39] ref|ZP_04405256.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae TMA 21] ref|ZP_04412889.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae bv. albensis VL426] ref|ZP_04961081.1| conserved hypothetical protein [Vibrio cholerae AM-19226] ref|ZP_06048519.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae CT 5369-93] ref|ZP_06940948.1| conserved hypothetical protein [Vibrio cholerae RC385] gb|EAY32645.1| conserved hypothetical protein [Vibrio cholerae 1587] gb|EAY39622.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gb|EDL72050.1| conserved hypothetical protein [Vibrio cholerae 623-39] gb|EDM53254.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gb|EDN15731.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gb|EEO02082.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae bv. albensis VL426] gb|EEO12526.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae TMA 21] gb|EEY52331.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae CT 5369-93] gb|EFH75447.1| conserved hypothetical protein [Vibrio cholerae RC385] gb|EGR08412.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vibrio cholerae HE48] Length = 310 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 187/282 (66%), Positives = 220/282 (78%) Query: 46 AGQSEVTAPGSRRFELLQKNIRRLTGRAIADFDMIRDGDVIMACMSGGADSYTMLDTLRY 105 A E+T F LQK IRR TG+AIADF+MI DGD IM C+SGG DS+TMLD L Sbjct: 3 AQTQELTKAQQYNFNKLQKRIRRNTGQAIADFNMIEDGDRIMVCLSGGKDSFTMLDILMS 62 Query: 106 LQSVAPVKFEIIAVNLDQKQPGFPEHILPEYFERIGVRYRIVEEDTYSIVKDKIAPGKTT 165 LQ AP+ FE++AVNLDQKQPGFPEH+LPEY E +GV Y+IVEEDTYSIV+DK+ GKTT Sbjct: 63 LQKSAPISFELVAVNLDQKQPGFPEHVLPEYLESLGVEYKIVEEDTYSIVQDKVPEGKTT 122 Query: 166 CSLCSRLRRGILYRVAKELGATKIALGHHRDDILHTFMLNMFYGGKIKTMPPKLIADDGE 225 C+LCSRLRRGILYR AKELGATKIALGHHRDDIL T LNMFYGGK+K MPPKL++D+GE Sbjct: 123 CALCSRLRRGILYRTAKELGATKIALGHHRDDILETLFLNMFYGGKMKGMPPKLVSDNGE 182 Query: 226 NVVIRPLAYVREPDIKKYAAAMQFPIIPCNLCGSQPNLQRQAMREMLNEWEKTNPLWIKS 285 +VVIRPLAY RE DI KY+ +PIIPCNLCGSQPNLQRQA+++MLN+W+K P I++ Sbjct: 183 HVVIRPLAYCREKDIIKYSDMRGYPIIPCNLCGSQPNLQRQAVKQMLNDWDKRFPGRIET 242 Query: 286 MFTAMGNIAPSHMLDRSLFDFTHFTPGPGKEASGDTLFDRDD 327 MF AM N+ PSH+ D SLFDF G GD FD+++ Sbjct: 243 MFRAMQNVVPSHLADFSLFDFKSIDKNSGVINGGDIGFDKEE 284 >gb|EGS69149.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vibrio cholerae BJG-01] Length = 310 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 187/282 (66%), Positives = 220/282 (78%) Query: 46 AGQSEVTAPGSRRFELLQKNIRRLTGRAIADFDMIRDGDVIMACMSGGADSYTMLDTLRY 105 A E+T F LQK IRR TG+AIADF+MI DGD IM C+SGG DS+TMLD L Sbjct: 3 AQTQELTKAQQYNFNKLQKRIRRNTGQAIADFNMIEDGDRIMVCLSGGKDSFTMLDILMS 62 Query: 106 LQSVAPVKFEIIAVNLDQKQPGFPEHILPEYFERIGVRYRIVEEDTYSIVKDKIAPGKTT 165 LQ AP+ FE++AVNLDQKQPGFPEH+LPEY E +GV Y+IVEEDTYSIV+DK+ GKTT Sbjct: 63 LQKSAPISFELVAVNLDQKQPGFPEHVLPEYLESLGVEYKIVEEDTYSIVQDKVPEGKTT 122 Query: 166 CSLCSRLRRGILYRVAKELGATKIALGHHRDDILHTFMLNMFYGGKIKTMPPKLIADDGE 225 C+LCSRLRRGILYR AKELGATKIALGHHRDDIL T LNMFYGGK+K MPPKL++D+GE Sbjct: 123 CALCSRLRRGILYRTAKELGATKIALGHHRDDILETLFLNMFYGGKMKGMPPKLVSDNGE 182 Query: 226 NVVIRPLAYVREPDIKKYAAAMQFPIIPCNLCGSQPNLQRQAMREMLNEWEKTNPLWIKS 285 +VVIRPLAY RE DI KY+ +PIIPCNLCGSQPNLQRQA+++MLN+W+K P I++ Sbjct: 183 HVVIRPLAYCREKDIIKYSDMRGYPIIPCNLCGSQPNLQRQAVKQMLNDWDKRFPGRIET 242 Query: 286 MFTAMGNIAPSHMLDRSLFDFTHFTPGPGKEASGDTLFDRDD 327 MF AM N+ PSH+ D SLFDF G GD FD+++ Sbjct: 243 MFRAMQNVVPSHLADFSLFDFKSIDKNSGVINGGDIGFDKEE 284 >ref|ZP_04410950.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae TM 11079-80] gb|EEO06632.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae TM 11079-80] gb|EGQ99443.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vibrio cholerae HE39] Length = 310 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 187/282 (66%), Positives = 220/282 (78%) Query: 46 AGQSEVTAPGSRRFELLQKNIRRLTGRAIADFDMIRDGDVIMACMSGGADSYTMLDTLRY 105 A E+T F LQK IRR TG+AIADF+MI DGD IM C+SGG DS+TMLD L Sbjct: 3 AQTQELTKAQQYNFNKLQKRIRRNTGQAIADFNMIEDGDRIMVCLSGGKDSFTMLDILMS 62 Query: 106 LQSVAPVKFEIIAVNLDQKQPGFPEHILPEYFERIGVRYRIVEEDTYSIVKDKIAPGKTT 165 LQ AP+ FE++AVNLDQKQPGFPEH+LPEY E +GV Y+IVEEDTYSIV+DK+ GKTT Sbjct: 63 LQKSAPISFELVAVNLDQKQPGFPEHVLPEYLESLGVEYKIVEEDTYSIVQDKVPEGKTT 122 Query: 166 CSLCSRLRRGILYRVAKELGATKIALGHHRDDILHTFMLNMFYGGKIKTMPPKLIADDGE 225 C+LCSRLRRGILYR AKELGATKIALGHHRDDIL T LNMFYGGK+K MPPKL++D+GE Sbjct: 123 CALCSRLRRGILYRTAKELGATKIALGHHRDDILETLFLNMFYGGKMKGMPPKLVSDNGE 182 Query: 226 NVVIRPLAYVREPDIKKYAAAMQFPIIPCNLCGSQPNLQRQAMREMLNEWEKTNPLWIKS 285 +VVIRPLAY RE DI KY+ +PIIPCNLCGSQPNLQRQA+++MLN+W+K P I++ Sbjct: 183 HVVIRPLAYCREKDIIKYSDMRGYPIIPCNLCGSQPNLQRQAVKQMLNDWDKRFPGRIET 242 Query: 286 MFTAMGNIAPSHMLDRSLFDFTHFTPGPGKEASGDTLFDRDD 327 MF AM N+ PSH+ D SLFDF G GD FD+++ Sbjct: 243 MFRAMQNVVPSHLADFSLFDFKSIDKNSGVINGGDIGFDKEE 284 >ref|YP_004566281.1| TtcA [Vibrio anguillarum 775] gb|AEH33239.1| TtcA [Vibrio anguillarum 775] Length = 310 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 189/279 (67%), Positives = 218/279 (78%) Query: 49 SEVTAPGSRRFELLQKNIRRLTGRAIADFDMIRDGDVIMACMSGGADSYTMLDTLRYLQS 108 E T F LQK IRR TG+AIADF+MI DGD IM C+SGG DS+TMLD L LQ Sbjct: 6 QERTKAQQYNFNKLQKRIRRNTGQAIADFNMIEDGDRIMVCLSGGKDSFTMLDILMSLQK 65 Query: 109 VAPVKFEIIAVNLDQKQPGFPEHILPEYFERIGVRYRIVEEDTYSIVKDKIAPGKTTCSL 168 APV FE+IAVNLDQKQPGFPEHILP+Y E++GV Y+IVEEDTYSIV+DKI GKTTCSL Sbjct: 66 SAPVSFELIAVNLDQKQPGFPEHILPQYLEQLGVEYKIVEEDTYSIVQDKIPEGKTTCSL 125 Query: 169 CSRLRRGILYRVAKELGATKIALGHHRDDILHTFMLNMFYGGKIKTMPPKLIADDGENVV 228 CSRLRRGILYR AKELGATKIALGHHRDDIL T LNMFYGGKIK MPPKL++D+GE+VV Sbjct: 126 CSRLRRGILYRTAKELGATKIALGHHRDDILETLFLNMFYGGKIKGMPPKLVSDNGEHVV 185 Query: 229 IRPLAYVREPDIKKYAAAMQFPIIPCNLCGSQPNLQRQAMREMLNEWEKTNPLWIKSMFT 288 IRPLAY RE DI KYA ++PIIPCNLCGSQPN+QRQ +++MLN W+K P I++MF+ Sbjct: 186 IRPLAYCREKDIIKYANMREYPIIPCNLCGSQPNMQRQNIKQMLNGWDKQFPGRIETMFS 245 Query: 289 AMGNIAPSHMLDRSLFDFTHFTPGPGKEASGDTLFDRDD 327 AM N+ PSH+ D LFDF G GD FD+++ Sbjct: 246 AMQNVVPSHLADFKLFDFKSINRDSGVINGGDIGFDKEE 284 >ref|ZP_04418888.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae 12129(1)] gb|EEN98758.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae 12129(1)] gb|EGS62414.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vibrio cholerae HC-02A1] Length = 310 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 186/282 (65%), Positives = 220/282 (78%) Query: 46 AGQSEVTAPGSRRFELLQKNIRRLTGRAIADFDMIRDGDVIMACMSGGADSYTMLDTLRY 105 A E+T F LQK IRR TG+AIADF+MI DGD IM C+SGG DS+TMLD L Sbjct: 3 AQTQELTKAQQYNFNKLQKRIRRNTGQAIADFNMIEDGDRIMVCLSGGKDSFTMLDILMS 62 Query: 106 LQSVAPVKFEIIAVNLDQKQPGFPEHILPEYFERIGVRYRIVEEDTYSIVKDKIAPGKTT 165 LQ AP+ FE++AVNLDQKQPGFPEH+LPEY E +GV Y+I+EEDTYSIV+DK+ GKTT Sbjct: 63 LQKSAPISFELVAVNLDQKQPGFPEHVLPEYLESLGVEYKIIEEDTYSIVQDKVPEGKTT 122 Query: 166 CSLCSRLRRGILYRVAKELGATKIALGHHRDDILHTFMLNMFYGGKIKTMPPKLIADDGE 225 C+LCSRLRRGILYR AKELGATKIALGHHRDDIL T LNMFYGGK+K MPPKL++D+GE Sbjct: 123 CALCSRLRRGILYRTAKELGATKIALGHHRDDILETLFLNMFYGGKMKGMPPKLVSDNGE 182 Query: 226 NVVIRPLAYVREPDIKKYAAAMQFPIIPCNLCGSQPNLQRQAMREMLNEWEKTNPLWIKS 285 +VVIRPLAY RE DI KY+ +PIIPCNLCGSQPNLQRQA+++MLN+W+K P I++ Sbjct: 183 HVVIRPLAYCREKDIIKYSDMRGYPIIPCNLCGSQPNLQRQAVKQMLNDWDKRFPGRIET 242 Query: 286 MFTAMGNIAPSHMLDRSLFDFTHFTPGPGKEASGDTLFDRDD 327 MF AM N+ PSH+ D SLFDF G GD FD+++ Sbjct: 243 MFRAMQNVVPSHLADFSLFDFKSIDKNSGVINGGDIGFDKEE 284 >gb|AEA78499.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae LMA3894-4] Length = 365 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 186/282 (65%), Positives = 220/282 (78%) Query: 46 AGQSEVTAPGSRRFELLQKNIRRLTGRAIADFDMIRDGDVIMACMSGGADSYTMLDTLRY 105 A E+T F LQK IRR TG+AIADF+MI DGD IM C+SGG DS+TMLD L Sbjct: 3 AQTQELTKAQQYNFNKLQKRIRRNTGQAIADFNMIDDGDRIMVCLSGGKDSFTMLDILMS 62 Query: 106 LQSVAPVKFEIIAVNLDQKQPGFPEHILPEYFERIGVRYRIVEEDTYSIVKDKIAPGKTT 165 LQ AP+ FE++AVNLDQKQPGFPEH+LPEY E +GV Y+I+EEDTYSIV+DK+ GKTT Sbjct: 63 LQKSAPISFELVAVNLDQKQPGFPEHVLPEYLESLGVEYKIIEEDTYSIVQDKVPEGKTT 122 Query: 166 CSLCSRLRRGILYRVAKELGATKIALGHHRDDILHTFMLNMFYGGKIKTMPPKLIADDGE 225 C+LCSRLRRGILYR AKELGATKIALGHHRDDIL T LNMFYGGK+K MPPKL++D+GE Sbjct: 123 CALCSRLRRGILYRTAKELGATKIALGHHRDDILETLFLNMFYGGKMKGMPPKLVSDNGE 182 Query: 226 NVVIRPLAYVREPDIKKYAAAMQFPIIPCNLCGSQPNLQRQAMREMLNEWEKTNPLWIKS 285 +VVIRPLAY RE DI KY+ +PIIPCNLCGSQPNLQRQA+++MLN+W+K P I++ Sbjct: 183 HVVIRPLAYCREKDIIKYSDMRGYPIIPCNLCGSQPNLQRQAVKQMLNDWDKRFPGRIET 242 Query: 286 MFTAMGNIAPSHMLDRSLFDFTHFTPGPGKEASGDTLFDRDD 327 MF AM N+ PSH+ D SLFDF G GD FD+++ Sbjct: 243 MFRAMQNVVPSHLADFSLFDFKSIDKNSGVINGGDIGFDKEE 284 >ref|NP_231075.1| C32 tRNA thiolase [Vibrio cholerae O1 biovar El Tor str. N16961] ref|ZP_01678255.1| conserved hypothetical protein [Vibrio cholerae 2740-80] ref|ZP_01970585.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] ref|ZP_01976421.1| conserved hypothetical protein [Vibrio cholerae B33] ref|YP_002810155.1| hypothetical protein VCM66_1388 [Vibrio cholerae M66-2] ref|ZP_04394503.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae BX 330286] ref|ZP_04400817.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae B33] ref|ZP_04407900.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae RC9] ref|YP_002878644.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae MJ-1236] ref|ZP_05237902.1| conserved hypothetical protein [Vibrio cholerae MO10] ref|ZP_05419759.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholera CIRS 101] ref|ZP_06030022.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae INDRE 91/1] ref|ZP_07008296.1| conserved hypothetical protein [Vibrio cholerae MAK 757] sp|Q9KS29.1|TTCA_VIBCH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA sp|C3LMC8.1|TTCA_VIBCM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gb|AAF94589.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gb|EAX57334.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gb|EAZ74139.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gb|EAZ75946.1| conserved hypothetical protein [Vibrio cholerae B33] gb|ACP05704.1| conserved hypothetical protein [Vibrio cholerae M66-2] gb|EEO10145.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae RC9] gb|EEO16244.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae B33] gb|EEO22133.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae BX 330286] gb|ACQ61074.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae MJ-1236] gb|EET22671.1| conserved hypothetical protein [Vibrio cholerae MO10] gb|EET92283.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholera CIRS 101] gb|EEY47747.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae INDRE 91/1] gb|EFH78872.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gb|EGR02001.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vibrio cholerae HC-49A2] gb|EGR03002.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vibrio cholerae HCUF01] gb|EGS48700.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vibrio cholerae HC-70A1] gb|EGS48736.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vibrio cholerae HC-48A1] gb|EGS49705.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vibrio cholerae HC-40A1] gb|EGS63904.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vibrio cholerae HFU-02] gb|EGS71219.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vibrio cholerae HC-38A1] Length = 310 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 186/282 (65%), Positives = 220/282 (78%) Query: 46 AGQSEVTAPGSRRFELLQKNIRRLTGRAIADFDMIRDGDVIMACMSGGADSYTMLDTLRY 105 A E+T F LQK IRR TG+AIADF+MI DGD IM C+SGG DS+TMLD L Sbjct: 3 AQTQELTKAQQYNFNKLQKRIRRNTGQAIADFNMIEDGDRIMVCLSGGKDSFTMLDILMS 62 Query: 106 LQSVAPVKFEIIAVNLDQKQPGFPEHILPEYFERIGVRYRIVEEDTYSIVKDKIAPGKTT 165 LQ AP+ FE++AVNLDQKQPGFPEH+LPEY E +GV Y+IVEEDTY+IV+DK+ GKTT Sbjct: 63 LQKSAPISFELVAVNLDQKQPGFPEHVLPEYLESLGVEYKIVEEDTYAIVQDKVPEGKTT 122 Query: 166 CSLCSRLRRGILYRVAKELGATKIALGHHRDDILHTFMLNMFYGGKIKTMPPKLIADDGE 225 C+LCSRLRRGILYR AKELGATKIALGHHRDDIL T LNMFYGGK+K MPPKL++D+GE Sbjct: 123 CALCSRLRRGILYRTAKELGATKIALGHHRDDILETLFLNMFYGGKMKGMPPKLVSDNGE 182 Query: 226 NVVIRPLAYVREPDIKKYAAAMQFPIIPCNLCGSQPNLQRQAMREMLNEWEKTNPLWIKS 285 +VVIRPLAY RE DI KY+ +PIIPCNLCGSQPNLQRQA+++MLN+W+K P I++ Sbjct: 183 HVVIRPLAYCREKDIIKYSDMRGYPIIPCNLCGSQPNLQRQAVKQMLNDWDKRFPGRIET 242 Query: 286 MFTAMGNIAPSHMLDRSLFDFTHFTPGPGKEASGDTLFDRDD 327 MF AM N+ PSH+ D SLFDF G GD FD+++ Sbjct: 243 MFRAMQNVVPSHLADFSLFDFKSIDKNSGVINGGDIGFDKEE 284 >ref|ZP_01682729.1| conserved hypothetical protein [Vibrio cholerae V52] gb|EAX60459.1| conserved hypothetical protein [Vibrio cholerae V52] Length = 309 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 186/282 (65%), Positives = 220/282 (78%) Query: 46 AGQSEVTAPGSRRFELLQKNIRRLTGRAIADFDMIRDGDVIMACMSGGADSYTMLDTLRY 105 A E+T F LQK IRR TG+AIADF+MI DGD IM C+SGG DS+TMLD L Sbjct: 3 AQTQELTKAQQYNFNKLQKRIRRNTGQAIADFNMIEDGDRIMVCLSGGKDSFTMLDILMS 62 Query: 106 LQSVAPVKFEIIAVNLDQKQPGFPEHILPEYFERIGVRYRIVEEDTYSIVKDKIAPGKTT 165 LQ AP+ FE++AVNLDQKQPGFPEH+LPEY E +GV Y+IVEEDTY+IV+DK+ GKTT Sbjct: 63 LQKSAPISFELVAVNLDQKQPGFPEHVLPEYLESLGVEYKIVEEDTYAIVQDKVPEGKTT 122 Query: 166 CSLCSRLRRGILYRVAKELGATKIALGHHRDDILHTFMLNMFYGGKIKTMPPKLIADDGE 225 C+LCSRLRRGILYR AKELGATKIALGHHRDDIL T LNMFYGGK+K MPPKL++D+GE Sbjct: 123 CALCSRLRRGILYRTAKELGATKIALGHHRDDILETLFLNMFYGGKMKGMPPKLVSDNGE 182 Query: 226 NVVIRPLAYVREPDIKKYAAAMQFPIIPCNLCGSQPNLQRQAMREMLNEWEKTNPLWIKS 285 +VVIRPLAY RE DI KY+ +PIIPCNLCGSQPNLQRQA+++MLN+W+K P I++ Sbjct: 183 HVVIRPLAYCREKDIIKYSDMRGYPIIPCNLCGSQPNLQRQAVKQMLNDWDKRFPGRIET 242 Query: 286 MFTAMGNIAPSHMLDRSLFDFTHFTPGPGKEASGDTLFDRDD 327 MF AM N+ PSH+ D SLFDF G GD FD+++ Sbjct: 243 MFRAMQNVVPSHLADFSLFDFKSIDKNSGVINGGDIGFDKEE 284