BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0073.p (218 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777772.1| two component response regulator protein [He... 433 e-120 ref|YP_004753958.1| two-component system response regulator QseB... 327 6e-88 ref|YP_003166441.1| winged helix family two component transcript... 305 3e-81 ref|YP_004361874.1| DNA-binding response regulator [Burkholderia... 304 6e-81 ref|YP_002912735.1| DNA-binding response regulator [Burkholderia... 301 3e-80 ref|YP_560287.1| two component transcriptional regulator [Burkho... 301 5e-80 ref|ZP_06840107.1| two component transcriptional regulator, wing... 301 5e-80 ref|YP_004229389.1| winged helix family two component transcript... 300 9e-80 ref|ZP_02884611.1| two component transcriptional regulator, wing... 298 5e-79 ref|YP_003908096.1| winged helix family two component transcript... 297 7e-79 >ref|YP_003777772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65864.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 218 Score = 433 bits (1114), Expect = e-120, Method: Compositional matrix adjust. Identities = 217/218 (99%), Positives = 218/218 (100%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL Sbjct: 1 MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 Query: 61 AVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 AVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA Sbjct: 61 AVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 Query: 121 GRAESLVQVREVVLNPATHEVTVSGKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYG 180 GRAESLVQVREV+LNPATHEVTVSGKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYG Sbjct: 121 GRAESLVQVREVILNPATHEVTVSGKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYG 180 Query: 181 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLVPA 218 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLVPA Sbjct: 181 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLVPA 218 >ref|YP_004753958.1| two-component system response regulator QseB [Collimonas fungivorans Ter331] gb|AEK63135.1| Two-component system response regulator QseB [Collimonas fungivorans Ter331] Length = 218 Score = 327 bits (839), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 166/216 (76%), Positives = 195/216 (90%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MR+LLVEDD MVGEAVRKGLRQDGFA+DWVQDG +A AL EDY +LLLDLGLP+K+GL Sbjct: 1 MRLLLVEDDLMVGEAVRKGLRQDGFAVDWVQDGAAALSALAQEDYQLLLLDLGLPKKNGL 60 Query: 61 AVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 VL++LR GN IPVLI TARDA++DRVAGLD GADDYL+KPFDLEEL+AR+RAL RRQ+ Sbjct: 61 EVLKSLRAGGNRIPVLIMTARDAISDRVAGLDGGADDYLVKPFDLEELAARIRALLRRQS 120 Query: 121 GRAESLVQVREVVLNPATHEVTVSGKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYG 180 GRAE L+++ ++ LNPATHEV + G+ VNLSAREF LL+AF+DRPGVVLSRAQLEEK+YG Sbjct: 121 GRAEPLIELGQLTLNPATHEVLLEGRQVNLSAREFALLRAFLDRPGVVLSRAQLEEKMYG 180 Query: 181 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLV 216 WDDSIESNAVEV+IHALRKK+GS+FIKNVRG+GY+V Sbjct: 181 WDDSIESNAVEVYIHALRKKLGSNFIKNVRGIGYMV 216 >ref|YP_003166441.1| winged helix family two component transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gb|ACV34512.1| two component transcriptional regulator, winged helix family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 220 Score = 305 bits (781), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 146/217 (67%), Positives = 183/217 (84%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MRVLLVEDDPM+G++V++GLRQDG DW++DG+ A++AL T Y +LLLDLGLP + GL Sbjct: 1 MRVLLVEDDPMIGKSVQQGLRQDGHTADWLRDGQQAELALATTPYDILLLDLGLPGRSGL 60 Query: 61 AVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 VL LR N+IPVL+ TARDA+ADR+ GLDAGADDYL+KPFDL+ELSARMRA+ RR A Sbjct: 61 DVLTRLRRSANSIPVLVITARDAIADRIRGLDAGADDYLVKPFDLDELSARMRAVQRRHA 120 Query: 121 GRAESLVQVREVVLNPATHEVTVSGKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYG 180 GRAE +++ + +NPATHE+T+ G PV LSAREF LLQA +++PGV LSRA+LEEKLYG Sbjct: 121 GRAEPVIENGPLRMNPATHELTLDGTPVTLSAREFALLQALLEQPGVPLSRARLEEKLYG 180 Query: 181 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLVP 217 W D IESNAVEV+IH+LR+K+G++ IKN+RGVGYLVP Sbjct: 181 WGDEIESNAVEVYIHSLRRKLGAEQIKNIRGVGYLVP 217 >ref|YP_004361874.1| DNA-binding response regulator [Burkholderia gladioli BSR3] gb|AEA61918.1| DNA-binding response regulator [Burkholderia gladioli BSR3] Length = 233 Score = 304 bits (778), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 144/216 (66%), Positives = 182/216 (84%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MR+LLVEDD M+ E VRK L+ DGFA+DWVQDG++A A+ E Y ++LLDLGLP++DG+ Sbjct: 14 MRILLVEDDKMIAEGVRKALKADGFAVDWVQDGEAALTAIGGETYDLMLLDLGLPKRDGV 73 Query: 61 AVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 VLRTLR RG+A+PVLI TARDAV+DRV GLDAGADDYL+KPFDL+EL ARMRAL RRQ+ Sbjct: 74 DVLRTLRSRGHALPVLIITARDAVSDRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 133 Query: 121 GRAESLVQVREVVLNPATHEVTVSGKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYG 180 GR+ES+++ + L+PA+H+VT+ G V LSAREF LL+A + RPG VLS++QLEEK+YG Sbjct: 134 GRSESVIRHGALTLDPASHQVTLDGAAVALSAREFALLEALLARPGAVLSKSQLEEKMYG 193 Query: 181 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLV 216 W + I SN VEV+IHALRKK+GSD I+NVRG+GY+V Sbjct: 194 WGEEIGSNTVEVYIHALRKKLGSDLIRNVRGLGYMV 229 >ref|YP_002912735.1| DNA-binding response regulator [Burkholderia glumae BGR1] gb|ACR30031.1| DNA-binding response regulator [Burkholderia glumae BGR1] Length = 225 Score = 301 bits (772), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 145/216 (67%), Positives = 181/216 (83%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MR+LLVEDD M+ E VRK L+ DG A+DWVQDG++A AL E Y ++LLDLGLP++DG+ Sbjct: 6 MRILLVEDDRMIAEGVRKALKADGCAVDWVQDGEAALTALGGETYDLMLLDLGLPKRDGV 65 Query: 61 AVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 VLRT R RG+A+PVLI TARDAV DRV GLDAGADDYL+KPFDL+EL+ARMRAL RRQA Sbjct: 66 EVLRTARARGHALPVLIITARDAVPDRVKGLDAGADDYLVKPFDLDELAARMRALIRRQA 125 Query: 121 GRAESLVQVREVVLNPATHEVTVSGKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYG 180 GR+ES+++ + L+PA+H+VT+ G PV LSAREF LL+A + RPG VLS++QLEEK+YG Sbjct: 126 GRSESVIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 185 Query: 181 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLV 216 W + I SN VEV+IHALRKK+GSD I+NVRG+GY+V Sbjct: 186 WGEEIGSNTVEVYIHALRKKLGSDLIRNVRGLGYMV 221 >ref|YP_560287.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gb|ABE32235.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 220 Score = 301 bits (771), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 143/216 (66%), Positives = 183/216 (84%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MR+LLVEDD M+ E VRK LR +GFA+DWV+DG+SA A ++ Y ++LLDLGLP++DGL Sbjct: 1 MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGESALSAAASQPYDLVLLDLGLPRRDGL 60 Query: 61 AVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 VLRTLR RG+A+PVLI TARDAVADRV GLDAGADDYL+KPFDL+EL ARMRAL RRQ+ Sbjct: 61 DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120 Query: 121 GRAESLVQVREVVLNPATHEVTVSGKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYG 180 GR++S +++ + L+PA+H+VT+ G PV LSAREF LL+A + RPG VLS++QLEEK+YG Sbjct: 121 GRSDSTIRLGNLTLDPASHQVTLEGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 181 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLV 216 W + I SN VEV+IHALRKK+G+D I+NVRG+GY++ Sbjct: 181 WGEEIGSNTVEVYIHALRKKLGADLIRNVRGLGYMI 216 >ref|ZP_06840107.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gb|EFG72389.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 220 Score = 301 bits (770), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 143/216 (66%), Positives = 183/216 (84%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MR+LLVEDD M+ E VRK LR +GFA+DWV+DG+SA A ++ Y ++LLDLGLP++DGL Sbjct: 1 MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGESALSAAASQPYDLVLLDLGLPRRDGL 60 Query: 61 AVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 VLRTLR RG+A+PVLI TARDAVADRV GLDAGADDYL+KPFDL+EL ARMRAL RRQ+ Sbjct: 61 DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120 Query: 121 GRAESLVQVREVVLNPATHEVTVSGKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYG 180 GR++S +++ + L+PA+H+VT+ G PV LSAREF LL+A + RPG VLS++QLEEK+YG Sbjct: 121 GRSDSTIRLGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 181 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLV 216 W + I SN VEV+IHALRKK+G+D I+NVRG+GY++ Sbjct: 181 WGEEIGSNTVEVYIHALRKKLGADLIRNVRGLGYMI 216 >ref|YP_004229389.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gb|ADX56329.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 220 Score = 300 bits (768), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 143/216 (66%), Positives = 182/216 (84%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MR+LLVEDD M+ E VRK LR +GFA+DWV+DG++A A ++ Y ++LLDLGLP++DGL Sbjct: 1 MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAASSQPYDLVLLDLGLPKRDGL 60 Query: 61 AVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 VLRTLR RG+A+PVLI TARDAVADRV GLDAGADDYL+KPFDL+EL ARMRAL RRQA Sbjct: 61 DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 120 Query: 121 GRAESLVQVREVVLNPATHEVTVSGKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYG 180 GR++S ++ + L+PA+H+VT+ G PV LSAREF LL+A + RPG VLS++QLEEK+YG Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 181 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLV 216 W + I SN VEV+IHALRKK+G+D I+NVRG+GY++ Sbjct: 181 WGEEIGSNTVEVYIHALRKKLGADLIRNVRGLGYMI 216 >ref|ZP_02884611.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gb|EDT09776.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 220 Score = 298 bits (762), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 141/216 (65%), Positives = 182/216 (84%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MR+LLVEDD M+ E VRK LR +GFA+DWV+DG++A A ++ Y ++LLDLGLP++DGL Sbjct: 1 MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAASSQPYDLVLLDLGLPKRDGL 60 Query: 61 AVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 VLRTLR RG+A+PVLI TARDAVADRV GLDAGADDYL+KPFDL+EL ARMRAL RRQ+ Sbjct: 61 DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120 Query: 121 GRAESLVQVREVVLNPATHEVTVSGKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYG 180 GR++S ++ + L+PA+H+VT+ G PV LSAREF LL+A + RPG VLS++QLEEK+YG Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 181 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLV 216 W + I SN VEV+IHALRKK+G++ I+NVRG+GY++ Sbjct: 181 WGEEIGSNTVEVYIHALRKKLGAELIRNVRGLGYMI 216 >ref|YP_003908096.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gb|ADN58805.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 220 Score = 297 bits (761), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 141/216 (65%), Positives = 181/216 (83%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MR+LLVEDD M+ E VRK LR +GFA+DWV+DG++A A ++ Y ++LLDLGLP++DGL Sbjct: 1 MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAATSQPYDLVLLDLGLPKRDGL 60 Query: 61 AVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 VLR LR RG+A+PVLI TARDAVADRV GLDAGADDYL+KPFDL+EL ARMRAL RRQ+ Sbjct: 61 DVLRALRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120 Query: 121 GRAESLVQVREVVLNPATHEVTVSGKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYG 180 GR++S ++ + L+PA+H+VT+ G PV LSAREF LL+A + RPG VLS++QLEEK+YG Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLEGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 181 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLV 216 W + I SN VEV+IHALRKK+G+D I+NVRG+GY++ Sbjct: 181 WGEEIGSNTVEVYIHALRKKLGADLIRNVRGLGYMI 216