BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0017.p (466 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777711.1| tRNA modification (thiophene/furan oxidation... 936 0.0 ref|YP_004755091.1| GTPase and tRNA-U34 5-formylation enzyme Trm... 766 0.0 ref|YP_001101690.1| tRNA modification GTPase TrmE [Herminiimonas... 733 0.0 ref|YP_001355383.1| tRNA modification GTPase TrmE [Janthinobacte... 724 0.0 ref|ZP_08274923.1| GTPase and tRNA-U34 5-formylation enzyme TrmE... 637 e-180 ref|ZP_04577569.1| tRNA modification GTPase mnmE [Oxalobacter fo... 621 e-175 ref|ZP_04579721.1| tRNA modification GTPase mnmE [Oxalobacter fo... 619 e-175 ref|YP_370756.2| tRNA modification GTPase TrmE [Burkholderia sp.... 617 e-174 ref|ZP_06840454.1| tRNA modification GTPase TrmE [Burkholderia s... 617 e-174 ref|YP_004230070.1| tRNA modification GTPase TrmE [Burkholderia ... 616 e-174 >ref|YP_003777711.1| tRNA modification (thiophene/furan oxidation) GTPase [Herbaspirillum seropedicae SmR1] gb|ADJ65803.1| tRNA modification (thiophene/furan oxidation) GTPase protein [Herbaspirillum seropedicae SmR1] Length = 479 Score = 936 bits (2418), Expect = 0.0, Method: Compositional matrix adjust. Identities = 464/466 (99%), Positives = 465/466 (99%) Query: 1 MTFDSSPIAAIATAPGRGGIGVVRLSGKNLAPVIQAVCGRASLAPRHATYLPFLNEDGSA 60 MTFDSSPIAAIATAPGRGGIGVVRLSGKNLAPVIQAVCGRASLAPRHATYLPFLNEDGSA Sbjct: 14 MTFDSSPIAAIATAPGRGGIGVVRLSGKNLAPVIQAVCGRASLAPRHATYLPFLNEDGSA 73 Query: 61 IDQGLAIHFPAPHSYTGEDVLELQGHGGPVVMQMLLARCVQAGSEIGLRLAEPGEFTQRA 120 IDQGLAIHFPAPHSYTGEDVLELQGHGGPVVMQMLLARCVQAGSEIGLRLAEPGEFTQRA Sbjct: 74 IDQGLAIHFPAPHSYTGEDVLELQGHGGPVVMQMLLARCVQAGSEIGLRLAEPGEFTQRA 133 Query: 121 FLNDKIDLAQAEAVADLIEATTEAAAKSASESLSGAFSKVIHELVDQVTRLRMLVEATLD 180 FLNDKIDLAQAEAVADLIEATTEAAAKSASESLSGAFSKVIHELVDQVTRLRMLVEATLD Sbjct: 134 FLNDKIDLAQAEAVADLIEATTEAAAKSASESLSGAFSKVIHELVDQVTRLRMLVEATLD 193 Query: 181 FPEEEIDFLKQSDARGQLAAIRSTLEEVFKHAAQGALLRDGLNAVLAGKPNVGKSSLLNV 240 FPEEEIDFLKQSDARGQLA IRSTLEEVFKHAAQGALLRDGLNAVLAGKPNVGKSSLLNV Sbjct: 194 FPEEEIDFLKQSDARGQLATIRSTLEEVFKHAAQGALLRDGLNAVLAGKPNVGKSSLLNV 253 Query: 241 LAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTAGIREAGDDGSGPDEVERIGIERT 300 LAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTAGIREAGDDGSGPDEVERIGIERT Sbjct: 254 LAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTAGIREAGDDGSGPDEVERIGIERT 313 Query: 301 WAEVAKADVILHMLDADRGPTLEDEKITSRFPDGVPIIRIWNKIDRSGHKAAVDKMPDAT 360 WAEVAKADVILHMLDADRGPTLEDEKITSRFPDGVPIIRIWNKIDRSGHKAAVDKMPDAT Sbjct: 314 WAEVAKADVILHMLDADRGPTLEDEKITSRFPDGVPIIRIWNKIDRSGHKAAVDKMPDAT 373 Query: 361 HVYLSASEGQGVDLLRAELLRIAGWQQTVESRYLARERHLLALKAADEHLAHAAAHAALD 420 HVYLSASEGQGVDLLRAELLRIAGWQQTVESRYLARERHLLALKAADEHLAHAAAHAALD Sbjct: 374 HVYLSASEGQGVDLLRAELLRIAGWQQTVESRYLARERHLLALKAADEHLAHAAAHAALD 433 Query: 421 NEAGEHALDLFAEELRLAQERLSSITGRFTPDDLLGVIFSRFCIGK 466 NEAGEHALDLFAEELRLAQERLSSITG+FTPDDLLGVIFSRFCIGK Sbjct: 434 NEAGEHALDLFAEELRLAQERLSSITGKFTPDDLLGVIFSRFCIGK 479 >ref|YP_004755091.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Collimonas fungivorans Ter331] gb|AEK64268.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Collimonas fungivorans Ter331] Length = 465 Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/468 (81%), Positives = 416/468 (88%), Gaps = 5/468 (1%) Query: 1 MTFDSSPIAAIATAPGRGGIGVVRLSGKNLAPVIQAVCGRA--SLAPRHATYLPFLNEDG 58 M+FDSSPIAAIATAPGRGGIGVVR+SGK L +I+AVCG A L PRHATYLPF N DG Sbjct: 1 MSFDSSPIAAIATAPGRGGIGVVRISGKQLGSLIEAVCGIAESKLTPRHATYLPFKNADG 60 Query: 59 SAIDQGLAIHFPAPHSYTGEDVLELQGHGGPVVMQMLLARCVQAGSEIGLRLAEPGEFTQ 118 S IDQGLAI+F APHSYTGEDVLELQGHGGPVV+QMLL+RC+ AG +IGLR+AEPGEFTQ Sbjct: 61 SVIDQGLAIYFKAPHSYTGEDVLELQGHGGPVVLQMLLSRCLAAGQDIGLRMAEPGEFTQ 120 Query: 119 RAFLNDKIDLAQAEAVADLIEATTEAAAKSASESLSGAFSKVIHELVDQVTRLRMLVEAT 178 RAF+NDK+DLAQAEAVADLIEA+TEAAAKSASESLSGAFSKVIH LV QVT LRMLVEAT Sbjct: 121 RAFINDKLDLAQAEAVADLIEASTEAAAKSASESLSGAFSKVIHALVGQVTNLRMLVEAT 180 Query: 179 LDFPEEEIDFLKQSDARGQLAAIRSTLEEVFKHAAQGALLRDGLNAVLAGKPNVGKSSLL 238 LDFPEEEIDFL++SDARGQLA IRSTL+ VF AAQGALLRDGLN VLAG+PNVGKSSLL Sbjct: 181 LDFPEEEIDFLEKSDARGQLATIRSTLDNVFSQAAQGALLRDGLNIVLAGQPNVGKSSLL 240 Query: 239 NVLAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTAGIREAGDDGSGPDEVERIGIE 298 NVLAGSDVAIVTPIAGTTRDKVT+TIQ+EG+PLNIIDTAGIREA D DEVERIGIE Sbjct: 241 NVLAGSDVAIVTPIAGTTRDKVTETIQLEGIPLNIIDTAGIREAED---ANDEVERIGIE 297 Query: 299 RTWAEVAKADVILHMLDADRGPTLEDEKITSRFPDGVPIIRIWNKIDRSGHKAAVDKMPD 358 RTWA VA ADVILHMLDA+ GP+L DEKI +RFP+ PIIRIWNKID+SGHK AVD M D Sbjct: 298 RTWAAVANADVILHMLDANHGPSLADEKIVARFPNSAPIIRIWNKIDQSGHKPAVDVMND 357 Query: 359 ATHVYLSASEGQGVDLLRAELLRIAGWQQTVESRYLARERHLLALKAADEHLAHAAAHAA 418 ATH+YLSA++ G+DLLR ELLRIAGWQQT ESRYLARERHL+ALKAA +HL A HA+ Sbjct: 358 ATHIYLSATDHLGIDLLRTELLRIAGWQQTGESRYLARERHLIALKAARDHLEIADQHAS 417 Query: 419 LDNEAGEHALDLFAEELRLAQERLSSITGRFTPDDLLGVIFSRFCIGK 466 LDN + +LDLFAEELRLAQ+RLSSITG FTPDDLLGVIFSRFCIGK Sbjct: 418 LDNRVNDQSLDLFAEELRLAQDRLSSITGAFTPDDLLGVIFSRFCIGK 465 >ref|YP_001101690.1| tRNA modification GTPase TrmE [Herminiimonas arsenicoxydans] sp|A4GAN2.1|MNME_HERAR RecName: Full=tRNA modification GTPase MnmE emb|CAL63569.1| tRNA modification GTPase TrmE [Herminiimonas arsenicoxydans] Length = 466 Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/469 (77%), Positives = 407/469 (86%), Gaps = 6/469 (1%) Query: 1 MTFDSSPIAAIATAPGRGGIGVVRLSGKNLAPVIQAVCGR---ASLAPRHATYLPFLNED 57 MTFDSSPIAAIATAPGRGGIGVVR+SGK+L+ V++AVCG +SL RHATYL F+N D Sbjct: 1 MTFDSSPIAAIATAPGRGGIGVVRISGKDLSSVMRAVCGADKGSSLQARHATYLDFVNSD 60 Query: 58 GSAIDQGLAIHFPAPHSYTGEDVLELQGHGGPVVMQMLLARCVQAGSEIGLRLAEPGEFT 117 GS IDQGLAI+F APHSYTGEDVLELQGHGGPVV+QMLL RC++AG++IGLR+AEPGEFT Sbjct: 61 GSVIDQGLAIYFKAPHSYTGEDVLELQGHGGPVVLQMLLTRCLEAGADIGLRMAEPGEFT 120 Query: 118 QRAFLNDKIDLAQAEAVADLIEATTEAAAKSASESLSGAFSKVIHELVDQVTRLRMLVEA 177 RAFLNDK+DLAQAE V DLIEA+TEAAAKSA++SLSGAFSK I ELVD++T LRMLVEA Sbjct: 121 HRAFLNDKLDLAQAEGVIDLIEASTEAAAKSATQSLSGAFSKTIQELVDKITNLRMLVEA 180 Query: 178 TLDFPEEEIDFLKQSDARGQLAAIRSTLEEVFKHAAQGALLRDGLNAVLAGKPNVGKSSL 237 TLDFPEEEIDFL++SDARGQL IR L+ VF AAQGALLRDGLN VLAG+PNVGKSSL Sbjct: 181 TLDFPEEEIDFLEKSDARGQLTNIREALQRVFSQAAQGALLRDGLNIVLAGQPNVGKSSL 240 Query: 238 LNVLAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTAGIREAGDDGSGPDEVERIGI 297 LN LAGSDVAIVTPIAGTTRDKV +TIQIEG+P+N+IDTAGIR+A D G DEVERIGI Sbjct: 241 LNALAGSDVAIVTPIAGTTRDKVIETIQIEGIPVNVIDTAGIRDAADAG---DEVERIGI 297 Query: 298 ERTWAEVAKADVILHMLDADRGPTLEDEKITSRFPDGVPIIRIWNKIDRSGHKAAVDKMP 357 ERTWA V ADVI+HMLDA RGPT DE+IT RFP VP++R+WNKID SGH+ A+D+MP Sbjct: 298 ERTWAAVQTADVIVHMLDASRGPTRADEQITERFPANVPVMRVWNKIDLSGHRPAIDRMP 357 Query: 358 DATHVYLSASEGQGVDLLRAELLRIAGWQQTVESRYLARERHLLALKAADEHLAHAAAHA 417 DATH+YLSA+ G+DLLR ELL + GWQQT ES YLARERHL+ALK+A HL AA HA Sbjct: 358 DATHIYLSATGLLGMDLLRTELLHLVGWQQTGESLYLARERHLVALKSAHSHLEMAAQHA 417 Query: 418 ALDNEAGEHALDLFAEELRLAQERLSSITGRFTPDDLLGVIFSRFCIGK 466 A DNEA + ALDLFAEELRLAQERLSSITG FT DDLLGVIFSRFCIGK Sbjct: 418 AHDNEATDPALDLFAEELRLAQERLSSITGEFTSDDLLGVIFSRFCIGK 466 >ref|YP_001355383.1| tRNA modification GTPase TrmE [Janthinobacterium sp. Marseille] sp|A6T4D6.1|MNME_JANMA RecName: Full=tRNA modification GTPase MnmE gb|ABR89668.1| tRNA modification GTPase [Janthinobacterium sp. Marseille] Length = 465 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/468 (75%), Positives = 407/468 (86%), Gaps = 5/468 (1%) Query: 1 MTFDSSPIAAIATAPGRGGIGVVRLSGKNLAPVIQAVCGR--ASLAPRHATYLPFLNEDG 58 M FDSSPIAAIATAPGRGGIGVVR+SGKN++ +I+AVC A L PRHAT+ F+N DG Sbjct: 1 MNFDSSPIAAIATAPGRGGIGVVRVSGKNISSIIEAVCATKGAELQPRHATFTNFVNADG 60 Query: 59 SAIDQGLAIHFPAPHSYTGEDVLELQGHGGPVVMQMLLARCVQAGSEIGLRLAEPGEFTQ 118 S IDQGLAI+F APHSYTGEDVLELQGHGGP+V+QMLL RC++AG++IGLR+A+PGEFT Sbjct: 61 SVIDQGLAIYFKAPHSYTGEDVLELQGHGGPIVLQMLLTRCLEAGTDIGLRMAQPGEFTH 120 Query: 119 RAFLNDKIDLAQAEAVADLIEATTEAAAKSASESLSGAFSKVIHELVDQVTRLRMLVEAT 178 RAFLNDK+DLAQAE V DLIEA+TEAAAKSAS+SLSGAFSK I +LVD++T LRMLVEAT Sbjct: 121 RAFLNDKLDLAQAEGVIDLIEASTEAAAKSASQSLSGAFSKTIQDLVDKITNLRMLVEAT 180 Query: 179 LDFPEEEIDFLKQSDARGQLAAIRSTLEEVFKHAAQGALLRDGLNAVLAGKPNVGKSSLL 238 LDFPEEEIDFL++SDARGQL IR L+ VF A+QGALLRDGLN VLAG+PNVGKSSLL Sbjct: 181 LDFPEEEIDFLEKSDARGQLNGIREALQAVFTQASQGALLRDGLNIVLAGQPNVGKSSLL 240 Query: 239 NVLAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTAGIREAGDDGSGPDEVERIGIE 298 N LAGSDVAIVT IAGTTRDKV +TIQIEG+P+N+IDTAGIR+A D DEVERIGIE Sbjct: 241 NALAGSDVAIVTAIAGTTRDKVIETIQIEGIPVNVIDTAGIRDASD---ATDEVERIGIE 297 Query: 299 RTWAEVAKADVILHMLDADRGPTLEDEKITSRFPDGVPIIRIWNKIDRSGHKAAVDKMPD 358 RTWA V ADVI+HMLDA+RGPT DE+I RFP+ +P++RIWNKID SGH+ A+D+MPD Sbjct: 298 RTWAAVKTADVIIHMLDANRGPTRADEQIVERFPENIPVMRIWNKIDLSGHRPAIDRMPD 357 Query: 359 ATHVYLSASEGQGVDLLRAELLRIAGWQQTVESRYLARERHLLALKAADEHLAHAAAHAA 418 +TH+Y+SA++ QG+DLLR ELLR+ GWQQT ES YLARERHL+ALK+A +HL AA HAA Sbjct: 358 STHIYVSATDLQGMDLLRGELLRLIGWQQTGESLYLARERHLVALKSAHDHLEMAAQHAA 417 Query: 419 LDNEAGEHALDLFAEELRLAQERLSSITGRFTPDDLLGVIFSRFCIGK 466 D+EA + ALDLFAEELRLAQERLSSITG FT DDLLGVIFSRFCIGK Sbjct: 418 HDSEATDPALDLFAEELRLAQERLSSITGEFTSDDLLGVIFSRFCIGK 465 >ref|ZP_08274923.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Oxalobacteraceae bacterium IMCC9480] gb|EGF31597.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Oxalobacteraceae bacterium IMCC9480] Length = 433 Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust. Identities = 326/438 (74%), Positives = 377/438 (86%), Gaps = 7/438 (1%) Query: 29 NLAPVIQAVCGRASLAPRHATYLPFLNEDGSAIDQGLAIHFPAPHSYTGEDVLELQGHGG 88 N+A I A+ +L R ATY F++ DGS IDQGLA++F APHSYTGEDVLELQGHGG Sbjct: 3 NIAAEICAMLPGKTLQARRATYTRFVDADGSTIDQGLALYFKAPHSYTGEDVLELQGHGG 62 Query: 89 PVVMQMLLARCVQAGSEIGLRLAEPGEFTQRAFLNDKIDLAQAEAVADLIEATTEAAAKS 148 PVVMQ+LLARC+QAGS I LRLA+PGEFTQRAFLNDK+DLAQAEAVADLI+A+TEAAA+S Sbjct: 63 PVVMQLLLARCLQAGSHIDLRLAQPGEFTQRAFLNDKLDLAQAEAVADLIDASTEAAARS 122 Query: 149 ASESLSGAFSKVIHELVDQVTRLRMLVEATLDFPEEEIDFLKQSDARGQLAAIRSTLEEV 208 AS+SLSG FS +I LV+QVT LRMLVEATLDFPEEEIDFL++SDARG+LAAIR TL++V Sbjct: 123 ASQSLSGVFSGIIRTLVEQVTHLRMLVEATLDFPEEEIDFLEKSDARGKLAAIRDTLQKV 182 Query: 209 FKHAAQGALLRDGLNAVLAGKPNVGKSSLLNVLAGSDVAIVTPIAGTTRDKVTQTIQIEG 268 F+ +AQGALLRDGLN VLAG+PNVGKSSLLN LAG+D+AIVTPIAGTTRDKVT+TIQIEG Sbjct: 183 FRQSAQGALLRDGLNIVLAGQPNVGKSSLLNALAGADIAIVTPIAGTTRDKVTETIQIEG 242 Query: 269 MPLNIIDTAGIREAGDDGSGPDEVERIGIERTWAEVAKADVILHMLDADRGPTLEDEKIT 328 +PLNIIDTAGIR D D+VERIGIERTWA VA+ADVI+H+LDA RGPTL DE I Sbjct: 243 IPLNIIDTAGIRY---DAEAIDDVERIGIERTWAAVAQADVIIHLLDACRGPTLADESIV 299 Query: 329 SRFPDGVPIIRIWNKIDRSGHKAAVDKMPDATHVYLSASEGQGVDLLRAELLRIAGWQQT 388 +RFP +P++R+WNKID SGHK A+D++ DATH+YLSA++ G++LLR ELLR+AGWQQT Sbjct: 300 ARFPANIPVMRVWNKIDLSGHKPAIDRLVDATHIYLSATDQLGMELLREELLRLAGWQQT 359 Query: 389 VESRYLARERHLLALKAADEHLAHAAAHAALDNEAGEHALDLFAEELRLAQERLSSITGR 448 ES YLARERHL+AL AA HL AA HAAL++ HALDLFAEELRLAQE+LSSITG Sbjct: 360 GESLYLARERHLVALAAAQTHLQFAAEHAALND----HALDLFAEELRLAQEQLSSITGA 415 Query: 449 FTPDDLLGVIFSRFCIGK 466 FT DDLLGVIFSRFCIGK Sbjct: 416 FTSDDLLGVIFSRFCIGK 433 >ref|ZP_04577569.1| tRNA modification GTPase mnmE [Oxalobacter formigenes HOxBLS] gb|EEO28531.1| tRNA modification GTPase mnmE [Oxalobacter formigenes HOxBLS] Length = 462 Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust. Identities = 304/470 (64%), Positives = 372/470 (79%), Gaps = 12/470 (2%) Query: 1 MTFDSSPIAAIATAPGRGGIGVVRLSGKNLAPVIQAVCGRAS----LAPRHATYLPFLNE 56 M DSSPIAAIATAPGRGG+G+VR+SGKNL P I AS L PR+A +LPFL+ Sbjct: 1 MNTDSSPIAAIATAPGRGGVGIVRISGKNLEPFISEFFRAASKDLPLKPRYAHFLPFLDA 60 Query: 57 DGSAIDQGLAIHFPAPHSYTGEDVLELQGHGGPVVMQMLLARCVQAGSEIGLRLAEPGEF 116 DG+ ID+G+A++F APHS+TGEDVLELQGHGGPVV+QM+L RC+Q G I LR+AEPGEF Sbjct: 61 DGNIIDEGIALYFKAPHSFTGEDVLELQGHGGPVVLQMVLKRCLQVGKTIQLRIAEPGEF 120 Query: 117 TQRAFLNDKIDLAQAEAVADLIEATTEAAAKSASESLSGAFSKVIHELVDQVTRLRMLVE 176 T+RAFLND+IDLAQAEA+ADLI+ATTE A +SAS SLSG FSK I +L + +LRM+VE Sbjct: 121 TRRAFLNDRIDLAQAEAIADLIDATTEEAVRSASRSLSGVFSKEIRDLASAIIQLRMMVE 180 Query: 177 ATLDFPEEEIDFLKQSDARGQLAAIRSTLEEVFKHAAQGALLRDGLNAVLAGKPNVGKSS 236 ++LDFPEE+IDFLK+ + + ++ +IR +L + AAQGALLR+G++ VLAG+ NVGKSS Sbjct: 181 SSLDFPEEDIDFLKKENVKEKIISIRESLRGIISQAAQGALLREGIHVVLAGQTNVGKSS 240 Query: 237 LLNVLAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTAGIREAGDDGSGPDEVERIG 296 LLNVL GSD+AIVTP+AGTTRDK+T+TIQ+EG+P+ +IDTAGIR + + DEVERIG Sbjct: 241 LLNVLTGSDIAIVTPVAGTTRDKITETIQLEGIPVTLIDTAGIRPS----TAEDEVERIG 296 Query: 297 IERTWAEVAKADVILHMLDADRGPTLEDEKITSRFPDGVPIIRIWNKIDRSGHKAAVDKM 356 IER W E+ KADVILH+LDA GPT DEKI + FP +P+I+IWNKID SGH+ + D M Sbjct: 297 IERAWTEIEKADVILHLLDASLGPTRSDEKIAADFPPNIPVIQIWNKIDISGHRPSTDNM 356 Query: 357 PDATHVYLSASEGQGVDLLRAELLRIAGWQQTVESRYLARERHLLALKAADEHLAHAAAH 416 T VYLS G+G+DLL+ ELL+IAGW QT ES YLARERHL A+K AD HLA A H Sbjct: 357 FGITQVYLSTQTGEGIDLLKTELLKIAGWVQTGESTYLARERHLTAMKMADTHLAIATEH 416 Query: 417 AALDNEAGEHALDLFAEELRLAQERLSSITGRFTPDDLLGVIFSRFCIGK 466 A +G +LDL AEELRLAQ+ L+SITG FT DDLLG+IFSRFCIGK Sbjct: 417 AV----SGSPSLDLLAEELRLAQDALNSITGEFTSDDLLGLIFSRFCIGK 462 >ref|ZP_04579721.1| tRNA modification GTPase mnmE [Oxalobacter formigenes OXCC13] gb|EEO30694.1| tRNA modification GTPase mnmE [Oxalobacter formigenes OXCC13] Length = 462 Score = 619 bits (1596), Expect = e-175, Method: Compositional matrix adjust. Identities = 307/470 (65%), Positives = 371/470 (78%), Gaps = 12/470 (2%) Query: 1 MTFDSSPIAAIATAPGRGGIGVVRLSGKNLAPVIQAV----CGRASLAPRHATYLPFLNE 56 M DSSPI AIAT PGRGG+G+VR+SGKNL P+I + L PR+A +LPFL+ Sbjct: 1 MKTDSSPIVAIATPPGRGGVGIVRVSGKNLDPLINELFKDTMADLPLTPRYAHFLPFLDA 60 Query: 57 DGSAIDQGLAIHFPAPHSYTGEDVLELQGHGGPVVMQMLLARCVQAGSEIGLRLAEPGEF 116 D S ID+GLAI+F AP+S+TGEDVLELQGHGG V+QM+L RC+ AG +I LR+AEPGEF Sbjct: 61 DKSIIDEGLAIYFKAPNSFTGEDVLELQGHGGTTVLQMVLKRCLLAGEKIDLRMAEPGEF 120 Query: 117 TQRAFLNDKIDLAQAEAVADLIEATTEAAAKSASESLSGAFSKVIHELVDQVTRLRMLVE 176 T+RAFLND+IDLAQAEA+ADLI+ATTE A +SAS SLSG FSK IHELV + +LRM+VE Sbjct: 121 TRRAFLNDRIDLAQAEAIADLIDATTEEAVRSASRSLSGVFSKEIHELVANIIQLRMMVE 180 Query: 177 ATLDFPEEEIDFLKQSDARGQLAAIRSTLEEVFKHAAQGALLRDGLNAVLAGKPNVGKSS 236 ++LDFPEE+IDFLK+ + GQ+A I+ L + +AQGALLR+G++ VLAG+ NVGKSS Sbjct: 181 SSLDFPEEDIDFLKKENVEGQIANIQEALSAIIAQSAQGALLREGIHVVLAGQTNVGKSS 240 Query: 237 LLNVLAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTAGIREAGDDGSGPDEVERIG 296 LLN LAGS+VAIVTPIAGTTRDK+T+TIQIEG+P+ +IDTAGIR S DEVERIG Sbjct: 241 LLNTLAGSNVAIVTPIAGTTRDKITETIQIEGVPVTLIDTAGIRA----NSAEDEVERIG 296 Query: 297 IERTWAEVAKADVILHMLDADRGPTLEDEKITSRFPDGVPIIRIWNKIDRSGHKAAVDKM 356 IERTW E+ KADVILH+LDA GPT DEKI + FP+ +P+I+IWNKID SGH+ +VD M Sbjct: 297 IERTWTEIGKADVILHLLDASLGPTRADEKIAADFPENIPVIQIWNKIDISGHRPSVDSM 356 Query: 357 PDATHVYLSASEGQGVDLLRAELLRIAGWQQTVESRYLARERHLLALKAADEHLAHAAAH 416 T VYLS QG+DLLR ELL+IAGW QT ES YLARERHL A+K A++HLA A+ H Sbjct: 357 FGITQVYLSTQTEQGIDLLRDELLKIAGWTQTGESTYLARERHLTAMKVAEQHLAIASEH 416 Query: 417 AALDNEAGEHALDLFAEELRLAQERLSSITGRFTPDDLLGVIFSRFCIGK 466 A A ++DL AEELRLAQ+ L+SITG FT DDLLG+IFSRFCIGK Sbjct: 417 AT----AANPSIDLLAEELRLAQDALNSITGEFTSDDLLGLIFSRFCIGK 462 >ref|YP_370756.2| tRNA modification GTPase TrmE [Burkholderia sp. 383] sp|Q39BQ4.2|MNME_BURS3 RecName: Full=tRNA modification GTPase MnmE Length = 464 Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust. Identities = 320/474 (67%), Positives = 379/474 (79%), Gaps = 19/474 (4%) Query: 1 MTFDSSPIAAIATAPGRGGIGVVRLS----GKNLA-PVIQAVCGRASLAPRHATYLPFLN 55 + DS PI AIATA GRGGIGVVR+S G+ A P+I A+CG+ LAPRHA+Y+PFL+ Sbjct: 2 LATDSDPIVAIATAAGRGGIGVVRVSFGRGGEAAALPLIDALCGQ-KLAPRHASYVPFLD 60 Query: 56 EDGSAIDQGLAIHFPAPHSYTGEDVLELQGHGGPVVMQMLLARCVQAGSEIGLRLAEPGE 115 E G+ +D+G+A++FPAPHSYTGE VLELQGHGGP+VMQ+LL RC+ AG GLRLAEPGE Sbjct: 61 EHGAPLDRGIALYFPAPHSYTGEHVLELQGHGGPIVMQLLLQRCLDAGRGFGLRLAEPGE 120 Query: 116 FTQRAFLNDKIDLAQAEAVADLIEATTEAAAKSASESLSGAFSKVIHELVDQVTRLRMLV 175 FT+RAFLNDK+DLAQAEAVADLIEA+TEAAA+SA SL GAFS+ IH LVD V LRMLV Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLDGAFSRQIHALVDDVITLRMLV 180 Query: 176 EATLDFPEEEIDFLKQSDARGQLAAIRSTLEEVFKHAAQGALLRDGLNAVLAGKPNVGKS 235 EATLDFPEEEIDFL+ +DARG+LA IR+ L V A QGALLR+GL+ VLAG+PNVGKS Sbjct: 181 EATLDFPEEEIDFLEAADARGKLAKIRAQLAHVLGDARQGALLREGLSVVLAGQPNVGKS 240 Query: 236 SLLNVLAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTAGIREAGDDGSGPDEVERI 295 SLLN LAG+++AIVTPIAGTTRDKV QTIQ+EG+PL+IIDTAG+RE DEVERI Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQVEGIPLHIIDTAGLRET------EDEVERI 294 Query: 296 GIERTWAEVAKADVILHMLDADRGPTLEDEKITSRFPDGVPIIRIWNKIDRSGHKAAVDK 355 GI RTW+E+ +ADV+LH+LD+ G T +DE I +RFP GVP++R+ NK D +G A V+ Sbjct: 295 GIARTWSEIERADVVLHLLDSRNGMTADDETIAARFPGGVPVVRVLNKTDLTGVAACVEH 354 Query: 356 MP---DATHVYLSASEGQGVDLLRAELLRIAGWQQTVESRYLARERHLLALKAADEHLAH 412 D T V+LSA G G+D+LRAELLRIAGWQ E YLARERHL+AL+AA EHLA Sbjct: 355 PAAEGDLTEVHLSAKRGDGIDMLRAELLRIAGWQAGAEGVYLARERHLIALRAAQEHLAQ 414 Query: 413 AAAHAALDNEAGEHALDLFAEELRLAQERLSSITGRFTPDDLLGVIFSRFCIGK 466 AA HA E +LDLFAEELRLAQE+L++ITG FT DDLLGVIFSRFCIGK Sbjct: 415 AADHA----EQRAQSLDLFAEELRLAQEQLNAITGEFTSDDLLGVIFSRFCIGK 464 >ref|ZP_06840454.1| tRNA modification GTPase TrmE [Burkholderia sp. Ch1-1] gb|EFG72174.1| tRNA modification GTPase TrmE [Burkholderia sp. Ch1-1] Length = 464 Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust. Identities = 319/474 (67%), Positives = 381/474 (80%), Gaps = 19/474 (4%) Query: 1 MTFDSSPIAAIATAPGRGGIGVVRLS----GKNLA-PVIQAVCGRASLAPRHATYLPFLN 55 +T DS PI AIATAPGRGGIGVVR+S G+ A P++QA+ G+ +LA RHA+Y+PFL+ Sbjct: 2 LTTDSDPIVAIATAPGRGGIGVVRISFGRAGEAAAQPLMQALTGQ-TLAARHASYVPFLD 60 Query: 56 EDGSAIDQGLAIHFPAPHSYTGEDVLELQGHGGPVVMQMLLARCVQAGSEIGLRLAEPGE 115 +GSA+D+G+A++FPAPHSYTGE VLELQGHGGPVV+Q++L RC+ AG GLRLAEPGE Sbjct: 61 ANGSALDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLVLQRCIDAGRAFGLRLAEPGE 120 Query: 116 FTQRAFLNDKIDLAQAEAVADLIEATTEAAAKSASESLSGAFSKVIHELVDQVTRLRMLV 175 FT+RAFLNDK+DL QAEAVADLIEA+TEAAA+SA SL GAFS+ IH LV+ V LRMLV Sbjct: 121 FTRRAFLNDKLDLTQAEAVADLIEASTEAAARSAGRSLDGAFSRDIHALVEDVITLRMLV 180 Query: 176 EATLDFPEEEIDFLKQSDARGQLAAIRSTLEEVFKHAAQGALLRDGLNAVLAGKPNVGKS 235 EATLDFPEEEIDFL+ +DARG+LA IR L V A QGALLR+GL+ VLAG+PNVGKS Sbjct: 181 EATLDFPEEEIDFLEAADARGKLARIRERLAHVLSEARQGALLREGLSVVLAGQPNVGKS 240 Query: 236 SLLNVLAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTAGIREAGDDGSGPDEVERI 295 SLLN LAG+++AIVTPIAGTTRDKV QTIQIEG+PL++IDTAG+R+ DEVE+I Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDT------EDEVEKI 294 Query: 296 GIERTWAEVAKADVILHMLDADRGPTLEDEKITSRFPDGVPIIRIWNKIDRSG---HKAA 352 GI RTW E+ +ADV+LH+LDA G T+EDE I RFP GVP++R+ NK D +G A Sbjct: 295 GIARTWNEIERADVVLHLLDARTGMTVEDEAIAGRFPAGVPVVRVLNKTDLTGLAPATRA 354 Query: 353 VDKMPDATHVYLSASEGQGVDLLRAELLRIAGWQQTVESRYLARERHLLALKAADEHLAH 412 +D PD + V LSA +G GV LLR ELLRIAGWQ ES YLARERHL+AL+AA+EHLA Sbjct: 355 LDADPDLSEVRLSAKQGDGVALLREELLRIAGWQAGAESVYLARERHLIALRAAEEHLAT 414 Query: 413 AAAHAALDNEAGEHALDLFAEELRLAQERLSSITGRFTPDDLLGVIFSRFCIGK 466 AAAHA + ALDLFAEELRLAQ++L+SITG F+ DDLLGVIFSRFCIGK Sbjct: 415 AAAHA----DQNSQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464 >ref|YP_004230070.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1001] gb|ADX57010.1| tRNA modification GTPase TrmE [Burkholderia sp. CCGE1001] Length = 464 Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust. Identities = 320/474 (67%), Positives = 381/474 (80%), Gaps = 19/474 (4%) Query: 1 MTFDSSPIAAIATAPGRGGIGVVRLS----GKNLAP-VIQAVCGRASLAPRHATYLPFLN 55 +T DS PI AIATAPGRGGIGVVR+S G+ AP ++QA+ G+ +LAPRHA+Y+PFL+ Sbjct: 2 LTTDSDPIVAIATAPGRGGIGVVRISFGRAGEAAAPPLMQALTGQ-TLAPRHASYVPFLD 60 Query: 56 EDGSAIDQGLAIHFPAPHSYTGEDVLELQGHGGPVVMQMLLARCVQAGSEIGLRLAEPGE 115 G+A+D+G+A++FPAPHSYTGE VLELQGHGGPVV+Q+LL RC+ AG GLRLAEPGE Sbjct: 61 GSGNALDRGIALYFPAPHSYTGEHVLELQGHGGPVVLQLLLQRCIDAGRAFGLRLAEPGE 120 Query: 116 FTQRAFLNDKIDLAQAEAVADLIEATTEAAAKSASESLSGAFSKVIHELVDQVTRLRMLV 175 FT+RAFLNDK+DLAQAEAVADLIEA+TEAAA+SA SL GAFS+ IH LV++V LRMLV Sbjct: 121 FTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAGRSLEGAFSRDIHALVEEVITLRMLV 180 Query: 176 EATLDFPEEEIDFLKQSDARGQLAAIRSTLEEVFKHAAQGALLRDGLNAVLAGKPNVGKS 235 EATLDFPEEEIDFL+ +DARG+LA IR L V A QGALLR+GL+ VLAG+PNVGKS Sbjct: 181 EATLDFPEEEIDFLEAADARGKLARIRERLASVLTEARQGALLREGLSVVLAGQPNVGKS 240 Query: 236 SLLNVLAGSDVAIVTPIAGTTRDKVTQTIQIEGMPLNIIDTAGIREAGDDGSGPDEVERI 295 SLLN LAG+++AIVTPIAGTTRDKV QTIQIEG+PL++IDTAG+R+ DEVE+I Sbjct: 241 SLLNALAGAELAIVTPIAGTTRDKVAQTIQIEGIPLHVIDTAGLRDT------EDEVEKI 294 Query: 296 GIERTWAEVAKADVILHMLDADRGPTLEDEKITSRFPDGVPIIRIWNKIDRSG---HKAA 352 GI RTW+E+ +ADV+LH+LDA G T EDE I RFP GVP++R+ NK D G A Sbjct: 295 GIARTWSEIERADVVLHLLDARTGMTAEDETIARRFPAGVPVVRVLNKTDLVGLPPETRA 354 Query: 353 VDKMPDATHVYLSASEGQGVDLLRAELLRIAGWQQTVESRYLARERHLLALKAADEHLAH 412 +D D + V LSA +G GV LLR ELLRIAGWQ ES YLARERHL+AL+AA+EHLA Sbjct: 355 LDADFDLSEVRLSAKQGDGVGLLRGELLRIAGWQAGAESVYLARERHLIALRAAEEHLAT 414 Query: 413 AAAHAALDNEAGEHALDLFAEELRLAQERLSSITGRFTPDDLLGVIFSRFCIGK 466 AAAHA + ALDLFAEELRLAQ++L+SITG F+ DDLLGVIFSRFCIGK Sbjct: 415 AAAHA----DQNSQALDLFAEELRLAQDQLNSITGEFSSDDLLGVIFSRFCIGK 464