BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0011.p (384 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777705.1| nucleotidyltransferase/DNA polymerase involv... 771 0.0 ref|YP_001355275.1| DNA-damage-inducible protein p [Janthinobact... 557 e-157 ref|YP_004029240.1| DNA polymerase IV [Burkholderia rhizoxinica ... 545 e-153 ref|YP_004752933.1| DNA polymerase IV [Collimonas fungivorans Te... 538 e-151 ref|YP_003607086.1| DNA-directed DNA polymerase [Burkholderia sp... 536 e-150 ref|ZP_06840824.1| DNA-directed DNA polymerase [Burkholderia sp.... 535 e-150 ref|ZP_03265116.1| DNA-directed DNA polymerase [Burkholderia sp.... 534 e-149 ref|YP_003909342.1| DNA-directed DNA polymerase [Burkholderia sp... 532 e-149 emb|CAL63465.2| DNA-directed DNA polymerase [Herminiimonas arsen... 530 e-148 ref|YP_553270.1| DNA-directed DNA polymerase [Burkholderia xenov... 529 e-148 >ref|YP_003777705.1| nucleotidyltransferase/DNA polymerase involved in DNA repair protein [Herbaspirillum seropedicae SmR1] gb|ADJ65797.1| nucleotidyltransferase/DNA polymerase involved in DNA repair protein [Herbaspirillum seropedicae SmR1] Length = 384 Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/384 (99%), Positives = 383/384 (99%) Query: 1 MANDRRIAHLDMDAFYASVELLRYPDLRGQAVVIGGGSATRPVELPDGTRQYFRMRDYAG 60 MANDRRIAHLDMDAFYASVELLRYPDLRGQAVVIGGGSATRPVELPDGTRQYFRMRDYAG Sbjct: 1 MANDRRIAHLDMDAFYASVELLRYPDLRGQAVVIGGGSATRPVELPDGTRQYFRMRDYAG 60 Query: 61 RGVVTTSTYEARALGVFSAMGIMKAAQLAPDAILLPTDFEAYRKYSRLFKEAVRNIAPLI 120 RGVVTTSTYEARALGVFSAMGIMKAAQLAPDAILLPTDFEAYRKYSRLFKEAVRNIAPLI Sbjct: 61 RGVVTTSTYEARALGVFSAMGIMKAAQLAPDAILLPTDFEAYRKYSRLFKEAVRNIAPLI 120 Query: 121 EDRGIDEIYIDLSAWSDTAPEVARQIKDAVHAATSLTCSIGVAPNKMLAKISSELDKPNG 180 EDRGIDEIYIDLSAWSDTAPEVARQIKDAVHAATSLTCSIGVAPNKMLAKISSELDKPNG Sbjct: 121 EDRGIDEIYIDLSAWSDTAPEVARQIKDAVHAATSLTCSIGVAPNKMLAKISSELDKPNG 180 Query: 181 LTILTPADIERRIWPLPVRKINGIGPKAAEKLSALGIDTVADLARAAPDLLRAHFGRSYA 240 LTILTPADIERRIWPLPVRKINGIGPKAAEKLSALGIDTVADLA AAPDLLRAHFGRSYA Sbjct: 181 LTILTPADIERRIWPLPVRKINGIGPKAAEKLSALGIDTVADLAGAAPDLLRAHFGRSYA 240 Query: 241 EWLGRVAQGVDDRPVQTYSEPKSISRETTFERDLHARADRAQLSEIFTALCVKLAADLDR 300 EWLGRVAQGVDDRPVQTYSEPKSISRETTFERDLHARADRAQLSEIFTALCVKLAADLDR Sbjct: 241 EWLGRVAQGVDDRPVQTYSEPKSISRETTFERDLHARADRAQLSEIFTALCVKLAADLDR 300 Query: 301 KGYVGRTIGIKLKYADFRGVTRDVTLPSPTGDAAAIRQAAGECLKRVPLDKKLRLLGVRV 360 KGYVGRTIGIKLKYADFRGVTRDVTLPSPTGDAAAIRQAAGECLKRVPLDKKLRLLGVRV Sbjct: 301 KGYVGRTIGIKLKYADFRGVTRDVTLPSPTGDAAAIRQAAGECLKRVPLDKKLRLLGVRV 360 Query: 361 GALSKKDEQAAASHAVQAELPFAS 384 GALSKKDEQAAASHAVQAELPFAS Sbjct: 361 GALSKKDEQAAASHAVQAELPFAS 384 >ref|YP_001355275.1| DNA-damage-inducible protein p [Janthinobacterium sp. Marseille] gb|ABR88469.1| DNA-damage-inducible protein p [Janthinobacterium sp. Marseille] Length = 401 Score = 557 bits (1436), Expect = e-157, Method: Compositional matrix adjust. Identities = 272/378 (71%), Positives = 317/378 (83%) Query: 3 NDRRIAHLDMDAFYASVELLRYPDLRGQAVVIGGGSATRPVELPDGTRQYFRMRDYAGRG 62 N RRIAHLDMDAFYASVELLRYP+LRGQ VVIGG S P+ DG+RQY R+RDYAGRG Sbjct: 20 NGRRIAHLDMDAFYASVELLRYPELRGQPVVIGGMSVHAPLTQADGSRQYARLRDYAGRG 79 Query: 63 VVTTSTYEARALGVFSAMGIMKAAQLAPDAILLPTDFEAYRKYSRLFKEAVRNIAPLIED 122 VVTTSTYEARALGVFSAMGIMKAA+LAPDAILLP DF+AYR YSRLFK+AV +IAP IE+ Sbjct: 80 VVTTSTYEARALGVFSAMGIMKAAKLAPDAILLPVDFDAYRHYSRLFKQAVADIAPHIEN 139 Query: 123 RGIDEIYIDLSAWSDTAPEVARQIKDAVHAATSLTCSIGVAPNKMLAKISSELDKPNGLT 182 RGIDEIYIDLS ++ +A +IK+AV AT L+CSIG+APNK+LAKI S+L+KPNGLT Sbjct: 140 RGIDEIYIDLSEHAEETHALASRIKNAVQQATGLSCSIGIAPNKLLAKICSDLEKPNGLT 199 Query: 183 ILTPADIERRIWPLPVRKINGIGPKAAEKLSALGIDTVADLARAAPDLLRAHFGRSYAEW 242 ILT ADI RIWPLP RKINGIGP+AAEKL+ALG++T+ +LA A LL HFGRSYA+W Sbjct: 200 ILTQADIATRIWPLPARKINGIGPRAAEKLTALGLNTIEELAGADATLLHEHFGRSYADW 259 Query: 243 LGRVAQGVDDRPVQTYSEPKSISRETTFERDLHARADRAQLSEIFTALCVKLAADLDRKG 302 LGRVAQG+D+RPV TYSEPKS+SRETTFE +LHA+ DR L IFT LC ++A DL+RKG Sbjct: 260 LGRVAQGIDERPVVTYSEPKSVSRETTFENNLHAKRDREALGGIFTRLCERVAGDLERKG 319 Query: 303 YVGRTIGIKLKYADFRGVTRDVTLPSPTGDAAAIRQAAGECLKRVPLDKKLRLLGVRVGA 362 YVGRT+GIKL++ADFR VTRD+TLP+ T DA AIRQAAGECLKR+PLD+ RLLGVR+G Sbjct: 320 YVGRTVGIKLRFADFRIVTRDLTLPAYTDDAVAIRQAAGECLKRIPLDQPFRLLGVRIGT 379 Query: 363 LSKKDEQAAASHAVQAEL 380 L++KD A +Q EL Sbjct: 380 LARKDSLPAEDPVLQGEL 397 >ref|YP_004029240.1| DNA polymerase IV [Burkholderia rhizoxinica HKI 454] emb|CBW75096.1| DNA polymerase IV (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454] Length = 388 Score = 545 bits (1405), Expect = e-153, Method: Compositional matrix adjust. Identities = 272/383 (71%), Positives = 307/383 (80%) Query: 1 MANDRRIAHLDMDAFYASVELLRYPDLRGQAVVIGGGSATRPVELPDGTRQYFRMRDYAG 60 M RRIAHLDMDAFYASVELLRYP+LRG+AVVIGGG P LPDGTR++ R+ DYAG Sbjct: 1 MVLTRRIAHLDMDAFYASVELLRYPELRGKAVVIGGGRKAAPQTLPDGTRRFARLGDYAG 60 Query: 61 RGVVTTSTYEARALGVFSAMGIMKAAQLAPDAILLPTDFEAYRKYSRLFKEAVRNIAPLI 120 RGVVTTSTYEARALGVFSAM +MKAAQLAPDAILLPTDF++YR YSRLFK AV I Sbjct: 61 RGVVTTSTYEARALGVFSAMSMMKAAQLAPDAILLPTDFDSYRHYSRLFKAAVATFTDQI 120 Query: 121 EDRGIDEIYIDLSAWSDTAPEVARQIKDAVHAATSLTCSIGVAPNKMLAKISSELDKPNG 180 +DRGIDEIYIDL+A D +A +IK AV AT LTCSI VAPNK+LAKI SELDKP+G Sbjct: 121 QDRGIDEIYIDLTALPDDTRALAMRIKQAVRDATGLTCSICVAPNKLLAKIGSELDKPDG 180 Query: 181 LTILTPADIERRIWPLPVRKINGIGPKAAEKLSALGIDTVADLARAAPDLLRAHFGRSYA 240 +TIL+ AD+ RIWPLPVR++NGIGPKA EKL +LGI TV DLA+A P LL+ HFG SYA Sbjct: 181 MTILSIADLPTRIWPLPVRRVNGIGPKAGEKLVSLGIATVGDLAKADPGLLQEHFGHSYA 240 Query: 241 EWLGRVAQGVDDRPVQTYSEPKSISRETTFERDLHARADRAQLSEIFTALCVKLAADLDR 300 WL VA G+D+RPVQ SEPKS+SRETTFERD+H R DRA LS IFT LCV++A DL R Sbjct: 241 AWLADVAHGIDERPVQVTSEPKSMSRETTFERDMHVRHDRASLSAIFTDLCVRVAQDLTR 300 Query: 301 KGYVGRTIGIKLKYADFRGVTRDVTLPSPTGDAAAIRQAAGECLKRVPLDKKLRLLGVRV 360 KGYVGRT+G+KL+YADFR VTRDV+LP PT DA IR+AA ECLKRVPLDK+LRLLGVRV Sbjct: 301 KGYVGRTVGLKLRYADFRTVTRDVSLPEPTADAVVIRRAATECLKRVPLDKRLRLLGVRV 360 Query: 361 GALSKKDEQAAASHAVQAELPFA 383 AL Q VQ +LPFA Sbjct: 361 SALRPAHAQRLVREPVQHKLPFA 383 >ref|YP_004752933.1| DNA polymerase IV [Collimonas fungivorans Ter331] gb|AEK62110.1| DNA polymerase IV [Collimonas fungivorans Ter331] Length = 430 Score = 538 bits (1387), Expect = e-151, Method: Compositional matrix adjust. Identities = 265/376 (70%), Positives = 310/376 (82%) Query: 5 RRIAHLDMDAFYASVELLRYPDLRGQAVVIGGGSATRPVELPDGTRQYFRMRDYAGRGVV 64 RRIAHLDMDAFYASVELLRYP+LRGQAVVIGGGS +P DG QY ++RDY GRGVV Sbjct: 51 RRIAHLDMDAFYASVELLRYPELRGQAVVIGGGSRHKPEPGEDGKLQYHKLRDYVGRGVV 110 Query: 65 TTSTYEARALGVFSAMGIMKAAQLAPDAILLPTDFEAYRKYSRLFKEAVRNIAPLIEDRG 124 TTSTYEARA GVFSAMG+MKAA+LAPDAILLPTDFE+YR YSRLFK AV IAPLIEDRG Sbjct: 111 TTSTYEARAFGVFSAMGMMKAAKLAPDAILLPTDFESYRHYSRLFKAAVAEIAPLIEDRG 170 Query: 125 IDEIYIDLSAWSDTAPEVARQIKDAVHAATSLTCSIGVAPNKMLAKISSELDKPNGLTIL 184 IDEIY+DLS D VA++IKDAV AT L+CSIG+APNK+LAKISSEL+KPNGLT++ Sbjct: 171 IDEIYMDLSQHPDDIRVVAQRIKDAVREATGLSCSIGIAPNKLLAKISSELEKPNGLTVI 230 Query: 185 TPADIERRIWPLPVRKINGIGPKAAEKLSALGIDTVADLARAAPDLLRAHFGRSYAEWLG 244 T ADI RIWPL RK+NGIGPKAAEKL+ALG++T+ +LA P +L+ +FGR+Y+EWL Sbjct: 231 TEADIPSRIWPLAARKVNGIGPKAAEKLTALGVNTIGELAATDPAVLQENFGRTYSEWLM 290 Query: 245 RVAQGVDDRPVQTYSEPKSISRETTFERDLHARADRAQLSEIFTALCVKLAADLDRKGYV 304 R + G+DDRPV T SE KSISRETTFERDLHA+ DR L+ IFT LCV+LA DL RKGY+ Sbjct: 291 RASHGLDDRPVVTSSETKSISRETTFERDLHAKLDRDTLTPIFTDLCVRLAGDLQRKGYL 350 Query: 305 GRTIGIKLKYADFRGVTRDVTLPSPTGDAAAIRQAAGECLKRVPLDKKLRLLGVRVGALS 364 RTIGIKL++ADF+ VTRD+TLP T DA AIR AAGECL+RV LD++LRLLGVR AL+ Sbjct: 351 ARTIGIKLRFADFQIVTRDLTLPDATDDATAIRHAAGECLRRVTLDRRLRLLGVRASALT 410 Query: 365 KKDEQAAASHAVQAEL 380 +K+E + +Q EL Sbjct: 411 RKEEAESEPAVMQGEL 426 >ref|YP_003607086.1| DNA-directed DNA polymerase [Burkholderia sp. CCGE1002] gb|ADG17575.1| DNA-directed DNA polymerase [Burkholderia sp. CCGE1002] Length = 388 Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust. Identities = 272/381 (71%), Positives = 310/381 (81%), Gaps = 1/381 (0%) Query: 5 RRIAHLDMDAFYASVELLRYPDLRGQAVVIGGGSATRPVELPDGTRQYFRMRDYAGRGVV 64 RRIAHLDMDAFYASVELLRYP+LRG+AVVIGGG + P L DG++++ ++RDYAGRGVV Sbjct: 6 RRIAHLDMDAFYASVELLRYPELRGRAVVIGGGRNSAPQLLEDGSKRFAKLRDYAGRGVV 65 Query: 65 TTSTYEARALGVFSAMGIMKAAQLAPDAILLPTDFEAYRKYSRLFKEAVRNIAPLIEDRG 124 TTSTYEARALGVFSAMG+MKAA LAPDAILLPTDF++YR YSRLFK AVR IEDRG Sbjct: 66 TTSTYEARALGVFSAMGMMKAAALAPDAILLPTDFDSYRHYSRLFKAAVRTFTDRIEDRG 125 Query: 125 IDEIYIDLSAWSDTAPEVARQIKDAVHAATSLTCSIGVAPNKMLAKISSELDKPNGLTIL 184 IDEIYIDL+ + ++ R+IK+AVH AT LTCSI VAPNK+LAKI SELDKP+GLTIL Sbjct: 126 IDEIYIDLTDLPGESADIGRRIKEAVHQATGLTCSICVAPNKLLAKIGSELDKPDGLTIL 185 Query: 185 TPADIERRIWPLPVRKINGIGPKAAEKLSALGIDTVADLARAAPDLLRAHFGRSYAEWLG 244 TPADI R+WPLPVRK+NGIGPKAAEKL+ALG+ TV DLA A LL+ +FGRSY+ WL Sbjct: 186 TPADIPLRVWPLPVRKVNGIGPKAAEKLTALGLATVGDLAAADAGLLQDNFGRSYSAWLM 245 Query: 245 RVAQGVDDRPVQTYSEPKSISRETTFERDLHARADRAQLSEIFTALCVKLAADLDRKGYV 304 VAQG D+RPV SEPKSISRETTFERDLH R DR LS FT LCV++A DL RKGYV Sbjct: 246 EVAQGQDERPVVVESEPKSISRETTFERDLHPRHDRPALSSAFTGLCVRVADDLVRKGYV 305 Query: 305 GRTIGIKLKYADFRGVTRDVTLPSPTGDAAAIRQAAGECLKRVPLDKKLRLLGVRVGALS 364 GRTIGIKL+Y DFR VTRD+TL PT DA IR+AA ECL+RV L++KLRLLGVR+ LS Sbjct: 306 GRTIGIKLRYDDFRTVTRDLTLDEPTADATEIRRAATECLRRVQLNRKLRLLGVRISTLS 365 Query: 365 KKDEQAAASH-AVQAELPFAS 384 EQA VQA+LPFAS Sbjct: 366 SASEQALKPRLPVQADLPFAS 386 >ref|ZP_06840824.1| DNA-directed DNA polymerase [Burkholderia sp. Ch1-1] gb|EFG71544.1| DNA-directed DNA polymerase [Burkholderia sp. Ch1-1] Length = 388 Score = 535 bits (1377), Expect = e-150, Method: Compositional matrix adjust. Identities = 272/381 (71%), Positives = 309/381 (81%), Gaps = 1/381 (0%) Query: 5 RRIAHLDMDAFYASVELLRYPDLRGQAVVIGGGSATRPVELPDGTRQYFRMRDYAGRGVV 64 RRIAHLDMDAFYASVELLRYP+LRGQAVVIGGG P L DGTR++ ++RDYAGRGVV Sbjct: 6 RRIAHLDMDAFYASVELLRYPELRGQAVVIGGGRNGVPQILEDGTRRFAKLRDYAGRGVV 65 Query: 65 TTSTYEARALGVFSAMGIMKAAQLAPDAILLPTDFEAYRKYSRLFKEAVRNIAPLIEDRG 124 TTSTYEARALGVFSAMG+MKAA LAPDAILLPTDF++YR YSRLFK AV IEDRG Sbjct: 66 TTSTYEARALGVFSAMGMMKAAMLAPDAILLPTDFDSYRHYSRLFKAAVATFTDRIEDRG 125 Query: 125 IDEIYIDLSAWSDTAPEVARQIKDAVHAATSLTCSIGVAPNKMLAKISSELDKPNGLTIL 184 IDEIYIDL+ E+A +IK AV+ AT LTCSI VAPNK+LAKI SELDKPNGLTIL Sbjct: 126 IDEIYIDLTELPGEPREIAARIKQAVNQATGLTCSICVAPNKLLAKIGSELDKPNGLTIL 185 Query: 185 TPADIERRIWPLPVRKINGIGPKAAEKLSALGIDTVADLARAAPDLLRAHFGRSYAEWLG 244 TPAD+ R+WPLPVRK+NGIGPKAAEKL+ALG+ TV DLA A LL+ HFGRSY+ WL Sbjct: 186 TPADVPLRVWPLPVRKVNGIGPKAAEKLTALGLATVGDLAAADAGLLQDHFGRSYSAWLM 245 Query: 245 RVAQGVDDRPVQTYSEPKSISRETTFERDLHARADRAQLSEIFTALCVKLAADLDRKGYV 304 ++AQG D+RPV SEPKS+SRETTFERDLH R DR LS FT LCV++A DL RKGYV Sbjct: 246 QIAQGYDERPVVVKSEPKSMSRETTFERDLHPRHDRPALSSSFTGLCVRVAEDLVRKGYV 305 Query: 305 GRTIGIKLKYADFRGVTRDVTLPSPTGDAAAIRQAAGECLKRVPLDKKLRLLGVRVGALS 364 GRT+GIKL+Y DFR VTRD+TL +PT DAA IR+AA ECL+RV L++KLRLLGVRV AL+ Sbjct: 306 GRTVGIKLRYDDFRTVTRDLTLDTPTADAAEIRRAATECLRRVELNRKLRLLGVRVSALT 365 Query: 365 KKDEQAAASH-AVQAELPFAS 384 + Q VQA+LPFAS Sbjct: 366 PANAQPPQRRLPVQADLPFAS 386 >ref|ZP_03265116.1| DNA-directed DNA polymerase [Burkholderia sp. H160] gb|EEA03367.1| DNA-directed DNA polymerase [Burkholderia sp. H160] Length = 388 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 271/381 (71%), Positives = 310/381 (81%), Gaps = 1/381 (0%) Query: 5 RRIAHLDMDAFYASVELLRYPDLRGQAVVIGGGSATRPVELPDGTRQYFRMRDYAGRGVV 64 RRIAHLDMDAFYASVELLRYP+LRG+AVVIGGG + P L DG++++ ++RDYAGRGVV Sbjct: 6 RRIAHLDMDAFYASVELLRYPELRGRAVVIGGGRNSAPQVLEDGSKRFAKLRDYAGRGVV 65 Query: 65 TTSTYEARALGVFSAMGIMKAAQLAPDAILLPTDFEAYRKYSRLFKEAVRNIAPLIEDRG 124 TTSTYEARALGVFSAMG+MKAA LAPDAILLPTDF++YR YSRLFK AVR IEDRG Sbjct: 66 TTSTYEARALGVFSAMGMMKAAALAPDAILLPTDFDSYRHYSRLFKAAVRTFTERIEDRG 125 Query: 125 IDEIYIDLSAWSDTAPEVARQIKDAVHAATSLTCSIGVAPNKMLAKISSELDKPNGLTIL 184 IDEIYIDL+ ++ R+IK+AVH AT LTCSI VAPNK+LAKI SELDKP+GLTIL Sbjct: 126 IDEIYIDLTDVPGEPVDIGRRIKEAVHQATGLTCSICVAPNKLLAKIGSELDKPDGLTIL 185 Query: 185 TPADIERRIWPLPVRKINGIGPKAAEKLSALGIDTVADLARAAPDLLRAHFGRSYAEWLG 244 TPADI R+WPLPVRK+NGIGPKAAEKL+ALG+ TV DLA A LL+ +FGRSY+ WL Sbjct: 186 TPADIPLRVWPLPVRKVNGIGPKAAEKLTALGLATVGDLAAADAGLLQDNFGRSYSAWLM 245 Query: 245 RVAQGVDDRPVQTYSEPKSISRETTFERDLHARADRAQLSEIFTALCVKLAADLDRKGYV 304 +VAQG D+RPV SEPKSISRETTFERDLH R DR LS FT LCV++A DL RKGYV Sbjct: 246 QVAQGHDERPVVVESEPKSISRETTFERDLHPRHDRPALSSAFTGLCVRVADDLVRKGYV 305 Query: 305 GRTIGIKLKYADFRGVTRDVTLPSPTGDAAAIRQAAGECLKRVPLDKKLRLLGVRVGALS 364 GRTIGIKL+Y DFR VTRD+TL PT DA IR+AA ECL+RV L++KLRLLGVR+ L+ Sbjct: 306 GRTIGIKLRYDDFRTVTRDLTLDEPTADATEIRRAATECLRRVELNRKLRLLGVRISTLT 365 Query: 365 KKDEQAAASH-AVQAELPFAS 384 EQA VQA+LPFAS Sbjct: 366 SASEQALKPRLPVQADLPFAS 386 >ref|YP_003909342.1| DNA-directed DNA polymerase [Burkholderia sp. CCGE1003] gb|ADN60051.1| DNA-directed DNA polymerase [Burkholderia sp. CCGE1003] Length = 388 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 272/381 (71%), Positives = 309/381 (81%), Gaps = 1/381 (0%) Query: 5 RRIAHLDMDAFYASVELLRYPDLRGQAVVIGGGSATRPVELPDGTRQYFRMRDYAGRGVV 64 RRIAHLDMDAFYASVELLRYP+LRG+AVVIGGG + P LPDG+R++ R+RDYAGRGVV Sbjct: 6 RRIAHLDMDAFYASVELLRYPELRGKAVVIGGGRNSAPETLPDGSRRFARLRDYAGRGVV 65 Query: 65 TTSTYEARALGVFSAMGIMKAAQLAPDAILLPTDFEAYRKYSRLFKEAVRNIAPLIEDRG 124 TTSTYEARALGVFSAMG+MKAA LAP+A+LLPTDF++YR YSRLFK AV IEDRG Sbjct: 66 TTSTYEARALGVFSAMGMMKAAVLAPNAVLLPTDFDSYRHYSRLFKAAVATFTDRIEDRG 125 Query: 125 IDEIYIDLSAWSDTAPEVARQIKDAVHAATSLTCSIGVAPNKMLAKISSELDKPNGLTIL 184 IDEIYIDL+ A +VA +IK AV+ AT LTCSI VAPNK+LAKI SELDKP+GLTIL Sbjct: 126 IDEIYIDLTDLPGEARDVAARIKQAVNQATGLTCSICVAPNKLLAKIGSELDKPDGLTIL 185 Query: 185 TPADIERRIWPLPVRKINGIGPKAAEKLSALGIDTVADLARAAPDLLRAHFGRSYAEWLG 244 TPAD+ R+WPLPVR +NGIGPKAAEKL+ALGI TV DLA A LL+ HFGRSY+ WL Sbjct: 186 TPADVPLRVWPLPVRNVNGIGPKAAEKLTALGIATVGDLAAADAGLLQDHFGRSYSAWLM 245 Query: 245 RVAQGVDDRPVQTYSEPKSISRETTFERDLHARADRAQLSEIFTALCVKLAADLDRKGYV 304 RVAQG D+RPV SEPKS+SRETTFERDLH R DR LS FT LCV++A DL RKGYV Sbjct: 246 RVAQGEDERPVVVESEPKSMSRETTFERDLHPRHDRPALSSSFTGLCVRVAEDLVRKGYV 305 Query: 305 GRTIGIKLKYADFRGVTRDVTLPSPTGDAAAIRQAAGECLKRVPLDKKLRLLGVRVGALS 364 G+T+GIKL+Y DFR VTRD+TL PT DAA IR+AA ECL+RV L++KLRLLGVRV ALS Sbjct: 306 GKTVGIKLRYDDFRTVTRDLTLDMPTADAAEIRRAATECLRRVELNRKLRLLGVRVSALS 365 Query: 365 KKDEQAAASH-AVQAELPFAS 384 Q VQA+LPFAS Sbjct: 366 LASAQPPQRRLPVQADLPFAS 386 >emb|CAL63465.2| DNA-directed DNA polymerase [Herminiimonas arsenicoxydans] Length = 386 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 261/361 (72%), Positives = 306/361 (84%) Query: 5 RRIAHLDMDAFYASVELLRYPDLRGQAVVIGGGSATRPVELPDGTRQYFRMRDYAGRGVV 64 R IAHLDMDAFYASVELLRYP+LRG+A+VIG GSA PV DG+R+Y R+RDY GRGVV Sbjct: 6 RHIAHLDMDAFYASVELLRYPELRGRALVIGAGSAHEPVLQADGSRRYARLRDYTGRGVV 65 Query: 65 TTSTYEARALGVFSAMGIMKAAQLAPDAILLPTDFEAYRKYSRLFKEAVRNIAPLIEDRG 124 TTSTYEARALGVFSAMG+MKAA+LAPDAILLPTDF AYR YSRLFK A IAP +EDRG Sbjct: 66 TTSTYEARALGVFSAMGLMKAAKLAPDAILLPTDFTAYRHYSRLFKAAAGAIAPQMEDRG 125 Query: 125 IDEIYIDLSAWSDTAPEVARQIKDAVHAATSLTCSIGVAPNKMLAKISSELDKPNGLTIL 184 IDEIY+DL+ +D VA++IKDAV AAT L+CSIGVAPNK+LAKI S+L+KPNGLTIL Sbjct: 126 IDEIYLDLNDQTDDIAVVAQRIKDAVVAATGLSCSIGVAPNKLLAKICSDLEKPNGLTIL 185 Query: 185 TPADIERRIWPLPVRKINGIGPKAAEKLSALGIDTVADLARAAPDLLRAHFGRSYAEWLG 244 + ADI RIWPLPV+KINGIGPK+ EKL+ALGI T+ LA P +LRA+FGR Y+ WL Sbjct: 186 SEADIPTRIWPLPVKKINGIGPKSTEKLAALGILTIEQLANCDPAVLRANFGRIYSAWLM 245 Query: 245 RVAQGVDDRPVQTYSEPKSISRETTFERDLHARADRAQLSEIFTALCVKLAADLDRKGYV 304 RVAQG+D+R + T SEPKSISRE+T ERDLHA+ DR++LS +FT LC ++A DL RK Y+ Sbjct: 246 RVAQGIDEREIVTRSEPKSISRESTLERDLHAKLDRSELSALFTRLCERVADDLVRKEYL 305 Query: 305 GRTIGIKLKYADFRGVTRDVTLPSPTGDAAAIRQAAGECLKRVPLDKKLRLLGVRVGALS 364 GRT+GIKL+YADF VTRD+TLP+PT DA AIRQAAGECL+RVPLDK+LRLLGVR+ +LS Sbjct: 306 GRTVGIKLRYADFSTVTRDLTLPAPTNDAQAIRQAAGECLRRVPLDKRLRLLGVRITSLS 365 Query: 365 K 365 K Sbjct: 366 K 366 >ref|YP_553270.1| DNA-directed DNA polymerase [Burkholderia xenovorans LB400] gb|ABE33920.1| DNA-directed DNA polymerase [Burkholderia xenovorans LB400] Length = 388 Score = 529 bits (1362), Expect = e-148, Method: Compositional matrix adjust. Identities = 270/381 (70%), Positives = 308/381 (80%), Gaps = 1/381 (0%) Query: 5 RRIAHLDMDAFYASVELLRYPDLRGQAVVIGGGSATRPVELPDGTRQYFRMRDYAGRGVV 64 RRIAHLDMDAFYASVELLRYP+LRGQAVVIGGG P L DGTR++ ++RDYAGRGVV Sbjct: 6 RRIAHLDMDAFYASVELLRYPELRGQAVVIGGGRNGVPQTLEDGTRRFAKLRDYAGRGVV 65 Query: 65 TTSTYEARALGVFSAMGIMKAAQLAPDAILLPTDFEAYRKYSRLFKEAVRNIAPLIEDRG 124 TTSTYEARALGVFSAMG+MKAA LAPDAILLPTDF++YR YSRLFK AV IEDRG Sbjct: 66 TTSTYEARALGVFSAMGMMKAAVLAPDAILLPTDFDSYRHYSRLFKAAVATFTDRIEDRG 125 Query: 125 IDEIYIDLSAWSDTAPEVARQIKDAVHAATSLTCSIGVAPNKMLAKISSELDKPNGLTIL 184 IDEIYIDL+ E+A +IK AV+ AT LTCSI VAPNK+LAKI SELDKP+GLTIL Sbjct: 126 IDEIYIDLTELPGEPREIAARIKQAVNQATGLTCSICVAPNKLLAKIGSELDKPDGLTIL 185 Query: 185 TPADIERRIWPLPVRKINGIGPKAAEKLSALGIDTVADLARAAPDLLRAHFGRSYAEWLG 244 TPAD+ R+WPLPVRK+NGIGPKAAEKL+ALG+ TV DLA A LL+ HFGRSY+ WL Sbjct: 186 TPADVPLRVWPLPVRKVNGIGPKAAEKLTALGLATVGDLAAADAGLLQDHFGRSYSAWLM 245 Query: 245 RVAQGVDDRPVQTYSEPKSISRETTFERDLHARADRAQLSEIFTALCVKLAADLDRKGYV 304 ++AQG D+RPV SEPKS+SRETTFERDLH R DR LS FT LCV++A DL RKGYV Sbjct: 246 QIAQGHDERPVVVESEPKSMSRETTFERDLHPRHDRPALSSSFTGLCVRVAEDLVRKGYV 305 Query: 305 GRTIGIKLKYADFRGVTRDVTLPSPTGDAAAIRQAAGECLKRVPLDKKLRLLGVRVGALS 364 GRT+GIKL+Y DFR VTRD+TL +PT DAA IR+AA ECL+RV L++KLRLLGVRV AL+ Sbjct: 306 GRTVGIKLRYDDFRTVTRDLTLDAPTADAAEIRRAATECLRRVELNRKLRLLGVRVSALT 365 Query: 365 KKDEQAAASH-AVQAELPFAS 384 + VQA+LPFAS Sbjct: 366 PANALTPPRRLPVQADLPFAS 386