BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0087.p (176 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_965267.1| fimbrial protein [Shewanella sp. W3-18-1] >gi|1... 181 5e-44 ref|YP_774723.1| fimbrial protein [Burkholderia ambifaria AMMD] ... 156 1e-36 ref|ZP_04612147.1| hypothetical protein yrohd0001_9030 [Yersinia... 149 1e-34 ref|ZP_04633265.1| hypothetical protein yfred0001_9220 [Yersinia... 149 2e-34 ref|YP_001004552.1| putative fimbrial protein [Yersinia enteroco... 147 9e-34 ref|YP_004296365.1| putative fimbrial protein [Yersinia enteroco... 145 2e-33 ref|NP_669695.1| fimbrial precursor [Yersinia pestis KIM 10] >gi... 142 2e-32 ref|NP_993018.1| fimbrial protein [Yersinia pestis biovar Microt... 142 2e-32 ref|ZP_04637906.1| hypothetical protein yinte0001_40080 [Yersini... 142 2e-32 ref|ZP_04626086.1| hypothetical protein ykris0001_17210 [Yersini... 142 3e-32 >ref|YP_965267.1| fimbrial protein [Shewanella sp. W3-18-1] gb|ABM26713.1| Fimbrial protein [Shewanella sp. W3-18-1] Length = 176 Score = 181 bits (458), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 105/178 (58%), Positives = 124/178 (69%), Gaps = 5/178 (2%) Query: 2 MKKHLAVLLLLSPSL--VLAAGNTITFRGQVHAQTCQVSVDGSA-NPVVLLPTVATGDLA 58 MKK +L+L + A NTITF G+V QTC+V+++G+A NP VLLPTV+T LA Sbjct: 1 MKKLTLSILVLGALFGTSVQANNTITFLGEVSDQTCEVAINGNAANPSVLLPTVSTAQLA 60 Query: 59 AVGSAAGETPFVVSVSGCTASATDALKIKTQFLASAATSGNNIPNLGTAKNVALQLRKSV 118 GS AGETPF +SVSGCT +AT AL IKT FL + T+ N+ N GTA NVALQL SV Sbjct: 61 TAGSVAGETPFTISVSGCTVNATQALPIKTVFLGNNVTTAGNLGNTGTATNVALQLLDSV 120 Query: 119 GGDAIKLVGGSSVSVDGLEMAAGATSASHTFAVRYISENGVAGAGSVIGSVQYALDYL 176 GG I L GS +VDGL +AAGA SASH FAV+YISE G A AG VI SVQYA+ YL Sbjct: 121 GGTEINLTVGS--AVDGLNVAAGADSASHDFAVQYISETGSATAGRVISSVQYAVSYL 176 >ref|YP_774723.1| fimbrial protein [Burkholderia ambifaria AMMD] gb|ABI88389.1| Fimbrial protein [Burkholderia ambifaria AMMD] Length = 202 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 92/179 (51%), Positives = 117/179 (65%), Gaps = 4/179 (2%) Query: 1 MMKKHLAVLLLLS-PSLVLA-AGNTITFRGQVHAQTCQVSVDGSAN-PVVLLPTVATGDL 57 +MKK+L VL+L + P A + NTI F+G+V QTC V+V+G+A+ P VLLPTV+T DL Sbjct: 23 LMKKNLLVLMLAAAPVFAFAQSSNTIQFQGEVTDQTCAVTVNGNASSPTVLLPTVSTADL 82 Query: 58 AAVGSAAGETPFVVSVSGCTASATDALKIKTQFLASAATSGNNIPNLGTAKNVALQLRKS 117 A G AGET F + +SGCTA A I T F+ + T+ N+ N GTA NVALQL Sbjct: 83 ATAGGTAGETHFTLGLSGCTAPTQTARAINTVFVGNQVTTNGNLGNTGTATNVALQLLDP 142 Query: 118 VGGDA-IKLVGGSSVSVDGLEMAAGATSASHTFAVRYISENGVAGAGSVIGSVQYALDY 175 L G S + GL +A G TSAS+ FAVRYI+ENG A AGSV+GSVQYA++Y Sbjct: 143 ANATTPFNLSGASGYAAPGLSLAVGDTSASYDFAVRYITENGSATAGSVLGSVQYAINY 201 >ref|ZP_04612147.1| hypothetical protein yrohd0001_9030 [Yersinia rohdei ATCC 43380] gb|EEQ03257.1| hypothetical protein yrohd0001_9030 [Yersinia rohdei ATCC 43380] Length = 176 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 95/182 (52%), Positives = 121/182 (66%), Gaps = 12/182 (6%) Query: 1 MMKKHLAVLLL-LSPSLVLAA-GNTITFRGQVHAQTCQVSVDG-SANPVVLLPTVATGDL 57 M K LA+ L S ++ +AA NTITF+G+V AQTC VSV+G ANP+VLLPTV++ DL Sbjct: 1 MNKITLAIALFSASTTIAMAASNNTITFQGEVTAQTCSVSVNGVDANPMVLLPTVSSSDL 60 Query: 58 AAVGSAAGETPFVVSVSGCTASATDALKIKTQFLASAATSGNNIPNLGTAKNVALQLRKS 117 A G AG+T F + V+GC +SA D + IKT F+A+ T+ N+ N GTA NV LQL K Sbjct: 61 DASGKTAGKTTFTLGVTGCASSAAD-IDIKTVFVANQVTTSGNLGNTGTATNVELQLLK- 118 Query: 118 VGGDAIKLVG---GSSVSVDGLEMAAGATSASHTFAVRYISENGVAGAGSVIGSVQYALD 174 DA G S+V+ DG+ + AG TSA H FAV+Y + G AG GSVIGSVQYA+ Sbjct: 119 ---DATTTTGINLNSNVAQDGIVLKAGDTSAEHDFAVQYYAT-GQAGPGSVIGSVQYAVS 174 Query: 175 YL 176 YL Sbjct: 175 YL 176 >ref|ZP_04633265.1| hypothetical protein yfred0001_9220 [Yersinia frederiksenii ATCC 33641] gb|EEQ14085.1| hypothetical protein yfred0001_9220 [Yersinia frederiksenii ATCC 33641] Length = 176 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 90/178 (50%), Positives = 120/178 (67%), Gaps = 6/178 (3%) Query: 1 MMKKHLAVLLLLSPSLVLAA--GNTITFRGQVHAQTCQVSVDGSAN-PVVLLPTVATGDL 57 M K +A++LL P +VLAA NTI F+G+V QTC V ++G+AN PVVLLPTV+T +L Sbjct: 1 MGKTLIALVLLALPGVVLAATSNNTIKFQGEVAEQTCMVDINGTANTPVVLLPTVSTSNL 60 Query: 58 AAVGSAAGETPFVVSVSGCTASATDALKIKTQFLASAATSGNNIPNLGTAKNVALQLRKS 117 V S AG+T F ++++GC + D KI + F TS N+ N+GTA+NVA+QL + Sbjct: 61 NQVNSVAGKTNFTINLTGCNIAIQDT-KISSVFQGMNVTSAGNLGNVGTAQNVAIQLLDT 119 Query: 118 VGGDAIKLVGGSSVSVDGLEMAAGATSASHTFAVRYISENGVAGAGSVIGSVQYALDY 175 G I++ GGS VSV G+ +AAGATSAS A +YI+E G A AGSVI S QYA+ Y Sbjct: 120 -NGAPIRMSGGS-VSVPGITLAAGATSASQDLAAQYITEEGRATAGSVIASAQYAITY 175 >ref|YP_001004552.1| putative fimbrial protein [Yersinia enterocolitica subsp. enterocolitica 8081] emb|CAL10300.1| putative fimbrial protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 176 Score = 147 bits (370), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 93/182 (51%), Positives = 116/182 (63%), Gaps = 12/182 (6%) Query: 1 MMKKHLAVLLLLSPSLVL--AAGNTITFRGQVHAQTCQVSVDG-SANPVVLLPTVATGDL 57 M K LA+ L + + V A+ NTITF+G+V AQTC V+V+G ANP+VLLPTV++GDL Sbjct: 1 MNKITLAMALFAASTTVAMAASNNTITFQGEVTAQTCSVTVNGLDANPMVLLPTVSSGDL 60 Query: 58 AAVGSAAGETPFVVSVSGCTASATDALKIKTQFLASAATSGNNIPNLGTAKNVALQLRKS 117 A G AG+T F + VSGC A D + IKT F+ + T+ N+ N GTA NV LQL K Sbjct: 61 DASGKTAGKTTFTLGVSGCATGAAD-IDIKTVFVGNQVTTAGNLKNTGTASNVDLQLLK- 118 Query: 118 VGGDAIKLVG---GSSVSVDGLEMAAGATSASHTFAVRYISENGVAGAGSVIGSVQYALD 174 DA G SSV DG+ + AG TSA H FAV+Y + G AG GSVI SVQYA+ Sbjct: 119 ---DATTTTGIDLNSSVGQDGIVLKAGDTSAEHDFAVQYFAT-GQAGPGSVIASVQYAVS 174 Query: 175 YL 176 YL Sbjct: 175 YL 176 >ref|YP_004296365.1| putative fimbrial protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] emb|CBY29171.1| fimbrial protein precursor [Yersinia enterocolitica subsp. palearctica Y11] gb|ADZ40662.1| putative fimbrial protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] emb|CBX70165.1| hypothetical protein YEW_DC13010 [Yersinia enterocolitica W22703] Length = 176 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 92/182 (50%), Positives = 116/182 (63%), Gaps = 12/182 (6%) Query: 1 MMKKHLAVLLLLSPSLVL--AAGNTITFRGQVHAQTCQVSVDG-SANPVVLLPTVATGDL 57 M K LA+ L + + V A+ NTITF+G+V AQTC V+V+G ANP+VLLPTV++GDL Sbjct: 1 MNKITLAMALFAASTTVAMAASNNTITFQGEVTAQTCSVTVNGLDANPMVLLPTVSSGDL 60 Query: 58 AAVGSAAGETPFVVSVSGCTASATDALKIKTQFLASAATSGNNIPNLGTAKNVALQLRKS 117 A G AG+T F + VSGC A D + IKT F+ + T+ N+ N GTA NV LQL K Sbjct: 61 NASGKTAGKTTFTLGVSGCATGAAD-IDIKTVFVGNQVTTAGNLKNTGTASNVDLQLLK- 118 Query: 118 VGGDAIKLVG---GSSVSVDGLEMAAGATSASHTFAVRYISENGVAGAGSVIGSVQYALD 174 DA +G S V DG+ + AG TSA H FAV+Y + G AG GSVI SVQYA+ Sbjct: 119 ---DATTTIGIDLNSGVGQDGIVLKAGDTSAEHDFAVQYFAT-GQAGPGSVIASVQYAVS 174 Query: 175 YL 176 YL Sbjct: 175 YL 176 >ref|NP_669695.1| fimbrial precursor [Yersinia pestis KIM 10] gb|AAM85946.1|AE013842_1 putative fimbrial precursor [Yersinia pestis KIM 10] Length = 189 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 85/178 (47%), Positives = 116/178 (65%), Gaps = 7/178 (3%) Query: 2 MKKHLAVLLL-LSPSLVLA--AGNTITFRGQVHAQTCQVSVDGSAN-PVVLLPTVATGDL 57 MKK L L+L + P + A + NTI F+G+V QTC V ++G+AN PVVLLPTV+T +L Sbjct: 14 MKKTLVTLMLFILPGIAFAETSNNTIKFQGEVAEQTCMVDINGTANTPVVLLPTVSTSNL 73 Query: 58 AAVGSAAGETPFVVSVSGCTASATDALKIKTQFLASAATSGNNIPNLGTAKNVALQLRKS 117 V S AG+T F ++++GC + D +I + F TSG N+ N+GTA+NVA+QL Sbjct: 74 NQVNSVAGKTNFTINLTGCNIAIQDT-QISSVFQGMNVTSGGNLGNIGTARNVAIQLIDP 132 Query: 118 VGGDAIKLVGGSSVSVDGLEMAAGATSASHTFAVRYISENGVAGAGSVIGSVQYALDY 175 G I++ GGS V V G+ +A GATSAS + +YI+E G A AGSVI S QYA+ Y Sbjct: 133 -RGTPIRMSGGS-VEVPGITLATGATSASQDLSAQYITEEGQATAGSVIASAQYAITY 188 >ref|NP_993018.1| fimbrial protein [Yersinia pestis biovar Microtus str. 91001] ref|YP_070438.1| fimbrial protein [Yersinia pseudotuberculosis IP 32953] ref|YP_651212.1| fimbrial protein [Yersinia pestis Antiqua] ref|ZP_01888174.1| fimbrial protein [Yersinia pestis CA88-4125] ref|YP_001401136.1| fimbrial protein [Yersinia pseudotuberculosis IP 31758] ref|YP_001606565.1| fimbrial protein [Yersinia pestis Angola] ref|ZP_02223042.1| fimbrial protein [Yersinia pestis biovar Orientalis str. F1991016] ref|ZP_02230116.1| fimbrial protein [Yersinia pestis biovar Antiqua str. E1979001] ref|ZP_02236690.1| fimbrial protein [Yersinia pestis biovar Antiqua str. B42003004] ref|ZP_02306569.1| fimbrial protein [Yersinia pestis biovar Antiqua str. UG05-0454] ref|ZP_02312114.1| fimbrial protein [Yersinia pestis biovar Orientalis str. MG05-1020] ref|ZP_02331214.1| fimbrial precursor [Yersinia pestis FV-1] ref|YP_001721002.1| fimbrial protein [Yersinia pseudotuberculosis YPIII] ref|YP_001872393.1| fimbrial protein [Yersinia pseudotuberculosis PB1/+] ref|YP_002346913.1| fimbrial protein [Yersinia pestis CO92] ref|ZP_04509773.1| fimbrial protein [Yersinia pestis Pestoides A] ref|ZP_04512475.1| fimbrial protein [Yersinia pestis biovar Orientalis str. PEXU2] emb|CAA21379.1| unnamed protein product [Yersinia pestis] gb|AAS61895.1| fimbrial protein [Yersinia pestis biovar Microtus str. 91001] emb|CAH21159.1| fimbrial protein [Yersinia pseudotuberculosis IP 32953] gb|ABG13267.1| fimbrial protein [Yersinia pestis Antiqua] emb|CAL20561.1| fimbrial protein [Yersinia pestis CO92] gb|EDM42626.1| fimbrial protein [Yersinia pestis CA88-4125] gb|ABS47757.1| fimbrial protein [Yersinia pseudotuberculosis IP 31758] gb|ABX85959.1| fimbrial protein [Yersinia pestis Angola] gb|EDR38126.1| fimbrial protein [Yersinia pestis biovar Orientalis str. F1991016] gb|EDR44074.1| fimbrial protein [Yersinia pestis biovar Antiqua str. E1979001] gb|EDR52315.1| fimbrial protein [Yersinia pestis biovar Antiqua str. B42003004] gb|EDR58077.1| fimbrial protein [Yersinia pestis biovar Orientalis str. MG05-1020] gb|EDR60863.1| fimbrial protein [Yersinia pestis biovar Antiqua str. UG05-0454] gb|ACA68549.1| Fimbrial protein [Yersinia pseudotuberculosis YPIII] gb|ACC88936.1| Fimbrial protein [Yersinia pseudotuberculosis PB1/+] gb|EEO83705.1| fimbrial protein [Yersinia pestis biovar Orientalis str. PEXU2] gb|EEO90365.1| fimbrial protein [Yersinia pestis Pestoides A] gb|ACY58598.1| fimbrial protein [Yersinia pestis D106004] gb|ACY62541.1| fimbrial protein [Yersinia pestis D182038] Length = 176 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 85/178 (47%), Positives = 116/178 (65%), Gaps = 7/178 (3%) Query: 2 MKKHLAVLLL-LSPSLVLA--AGNTITFRGQVHAQTCQVSVDGSAN-PVVLLPTVATGDL 57 MKK L L+L + P + A + NTI F+G+V QTC V ++G+AN PVVLLPTV+T +L Sbjct: 1 MKKTLVTLMLFILPGIAFAETSNNTIKFQGEVAEQTCMVDINGTANTPVVLLPTVSTSNL 60 Query: 58 AAVGSAAGETPFVVSVSGCTASATDALKIKTQFLASAATSGNNIPNLGTAKNVALQLRKS 117 V S AG+T F ++++GC + D +I + F TSG N+ N+GTA+NVA+QL Sbjct: 61 NQVNSVAGKTNFTINLTGCNIAIQDT-QISSVFQGMNVTSGGNLGNIGTARNVAIQLIDP 119 Query: 118 VGGDAIKLVGGSSVSVDGLEMAAGATSASHTFAVRYISENGVAGAGSVIGSVQYALDY 175 G I++ GGS V V G+ +A GATSAS + +YI+E G A AGSVI S QYA+ Y Sbjct: 120 -RGTPIRMSGGS-VEVPGITLATGATSASQDLSAQYITEEGQATAGSVIASAQYAITY 175 >ref|ZP_04637906.1| hypothetical protein yinte0001_40080 [Yersinia intermedia ATCC 29909] gb|EEQ17918.1| hypothetical protein yinte0001_40080 [Yersinia intermedia ATCC 29909] Length = 176 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 91/182 (50%), Positives = 117/182 (64%), Gaps = 12/182 (6%) Query: 1 MMKKHLAVLLLLSPSLVL--AAGNTITFRGQVHAQTCQVSVDG-SANPVVLLPTVATGDL 57 M K LA+ L + + V A+ NTITF+G+V AQTC V+V+G ANP+VLLPTV++ DL Sbjct: 1 MNKLTLAMALFSASTTVAMAASNNTITFQGEVTAQTCSVTVNGVDANPMVLLPTVSSSDL 60 Query: 58 AAVGSAAGETPFVVSVSGCTASATDALKIKTQFLASAATSGNNIPNLGTAKNVALQLRKS 117 A G AG+T F + VSGC TD + +KT F+A+ T+ N+ N GTA NV LQL K Sbjct: 61 DASGKTAGKTTFTLGVSGCAPGPTD-IDVKTVFVANQVTASGNLKNTGTAGNVELQLLK- 118 Query: 118 VGGDAIKLVG---GSSVSVDGLEMAAGATSASHTFAVRYISENGVAGAGSVIGSVQYALD 174 DA G S V+ DG+ + AG T+A H FAV+Y + G AGAGSVI SVQYA+ Sbjct: 119 ---DATTTSGIDLNSGVAQDGIVLKAGDTAAEHDFAVQYYA-TGQAGAGSVIASVQYAVS 174 Query: 175 YL 176 YL Sbjct: 175 YL 176 >ref|ZP_04626086.1| hypothetical protein ykris0001_17210 [Yersinia kristensenii ATCC 33638] gb|EEP89427.1| hypothetical protein ykris0001_17210 [Yersinia kristensenii ATCC 33638] Length = 176 Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 83/159 (52%), Positives = 107/159 (67%), Gaps = 10/159 (6%) Query: 22 NTITFRGQVHAQTCQVSVDG-SANPVVLLPTVATGDLAAVGSAAGETPFVVSVSGCTASA 80 NTITF+G+V AQTC V+V+G ANP+VLLPTV++ DL A G AG+T F + VSGC ASA Sbjct: 24 NTITFQGEVTAQTCAVTVNGLDANPMVLLPTVSSSDLDASGKTAGKTTFTLGVSGCAASA 83 Query: 81 TDALKIKTQFLASAATSGNNIPNLGTAKNVALQLRKSVGGDAIKLVG---GSSVSVDGLE 137 D + +KT F+ + T+ N+ N GTA NV LQL K DA+ G S ++ +G+ Sbjct: 84 DD-IDVKTVFVGNQVTTNGNLQNTGTASNVELQLLK----DAVTTTGINLNSGIAQEGIV 138 Query: 138 MAAGATSASHTFAVRYISENGVAGAGSVIGSVQYALDYL 176 + AG TSA H FAV+Y + G AG GSVI SVQYA+ YL Sbjct: 139 LEAGKTSAEHDFAVQYFA-TGQAGPGSVIASVQYAVSYL 176