BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0082.p (213 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003375799.1| LuxR family transcriptional regulator [Xanth... 229 2e-58 emb|CAQ18301.1| capsular synthesis response regulator protein [R... 227 7e-58 ref|NP_523180.1| capsular synthesis response regulator transcrip... 227 8e-58 ref|YP_003750643.1| capsular synthesis response regulator transc... 224 7e-57 ref|YP_003609631.1| LuxR family transcriptional regulator [Burkh... 223 2e-56 ref|ZP_04947578.1| Response regulator [Burkholderia dolosa AUO15... 215 3e-54 gb|AEG72245.1| capsular synthesis response regulator protein [Ra... 215 3e-54 ref|YP_002907893.1| LuxR family transcriptional regulator [Burkh... 212 3e-53 ref|ZP_02906947.1| two component transcriptional regulator, LuxR... 173 1e-41 ref|ZP_02906942.1| two component transcriptional regulator, LuxR... 159 3e-37 >ref|YP_003375799.1| LuxR family transcriptional regulator [Xanthomonas albilineans GPE PC73] emb|CBA15811.1| probable two-component system regulatory protein, luxr family [Xanthomonas albilineans] Length = 217 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 119/210 (56%), Positives = 159/210 (75%), Gaps = 1/210 (0%) Query: 2 IRVGIADDYPVVLRGIEAILSPCPDMQLAFSAESIAQLMTCLAQTPIDVLLCDYAFDDDP 61 IRVGIADD+P+VL G+ ++L D+++ FS ++I QL+ LA+ P+DVLLCDY F+ DP Sbjct: 4 IRVGIADDHPIVLLGVTSVLKDNLDIEVVFSCDAIDQLLRSLAEQPVDVLLCDYEFESDP 63 Query: 62 QADGLDLLKRLRRHHPELKIIFLSAHAQPQIISSALELGAAGFIGKNRTDFVNLPQAIYC 121 QADGL LL+RLRR P+++++ LSAH P I+S+AL+LGA+GFIGK+R DF NL A+ Sbjct: 64 QADGLHLLQRLRRLAPQMRLLVLSAHTAPSIVSAALQLGASGFIGKSRADFGNLVAAVRD 123 Query: 122 VQAGQVYLPQSLSASLLGSLYSVHSRQTGLGQLSERELVVARMICQGMSIAAIAERLKRS 181 V +G++Y+P SLSA+LL + YS S TG+ LS +E VARM G+S+ IA RLKRS Sbjct: 124 VASGRLYVPSSLSAALLTTRYS-RSSATGVNTLSAKEATVARMTADGLSLGEIAARLKRS 182 Query: 182 PKTISNQKVAAMKKLGVSNDVELSRVFQSL 211 PKTISNQK+AAMKKLG NDVEL+ + + L Sbjct: 183 PKTISNQKIAAMKKLGAKNDVELATILREL 212 >emb|CAQ18301.1| capsular synthesis response regulator protein [Ralstonia solanacearum MolK2] Length = 219 Score = 227 bits (579), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 122/210 (58%), Positives = 157/210 (74%), Gaps = 1/210 (0%) Query: 2 IRVGIADDYPVVLRGIEAILSPCPDMQLAFSAESIAQLMTCLAQTPIDVLLCDYAFDDDP 61 I+VGIADD+P+VL G ++L PD+++ F+ E+I QL+ LA+ P+DVLLCDY F+ DP Sbjct: 4 IKVGIADDHPIVLLGATSMLKDHPDIEVVFTCETIEQLLKQLAEHPVDVLLCDYEFESDP 63 Query: 62 QADGLDLLKRLRRHHPELKIIFLSAHAQPQIISSALELGAAGFIGKNRTDFVNLPQAIYC 121 QADGL LL+RLRR P+ +I+ LSAH+ P I+S+ L LGA+GFIGK+RTDF NL A+ Sbjct: 64 QADGLHLLQRLRRLVPDTRILLLSAHSTPSIVSATLGLGASGFIGKSRTDFGNLSAAVRK 123 Query: 122 VQAGQVYLPQSLSASLLGSLYSVHSRQTGLGQLSERELVVARMICQGMSIAAIAERLKRS 181 V G +Y+P SLSA+LL + Y S G+ LS RE+VVA+M G++I IA RLKRS Sbjct: 124 VAGGSLYVPGSLSAALLSARYG-KSGIVGMEALSTREVVVAQMTADGLTIGEIAARLKRS 182 Query: 182 PKTISNQKVAAMKKLGVSNDVELSRVFQSL 211 PKTISNQKVAAMKKLGV NDVEL+ V + L Sbjct: 183 PKTISNQKVAAMKKLGVKNDVELAAVLREL 212 >ref|NP_523180.1| capsular synthesis response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] emb|CAD18772.1| probable capsular synthesis response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 219 Score = 227 bits (579), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 120/210 (57%), Positives = 157/210 (74%), Gaps = 1/210 (0%) Query: 2 IRVGIADDYPVVLRGIEAILSPCPDMQLAFSAESIAQLMTCLAQTPIDVLLCDYAFDDDP 61 I+VGIADD+P+VL G ++L PD+++ F+ E+I QL+ LA+ P+DVLLCDY F+ DP Sbjct: 4 IKVGIADDHPIVLLGATSMLKDHPDIEVLFTCETIEQLLKQLAEHPVDVLLCDYEFESDP 63 Query: 62 QADGLDLLKRLRRHHPELKIIFLSAHAQPQIISSALELGAAGFIGKNRTDFVNLPQAIYC 121 QADGL LL+RLRR P+ +I+ LSAH+ P I+S+ L LGA+GFIGK+R DF NL A+ Sbjct: 64 QADGLHLLQRLRRLVPDTRILLLSAHSTPSIVSATLGLGASGFIGKSRADFGNLAAAVRK 123 Query: 122 VQAGQVYLPQSLSASLLGSLYSVHSRQTGLGQLSERELVVARMICQGMSIAAIAERLKRS 181 V G +Y+P SLSA+LL + Y H G+ LS RE++VA+M G++I IA+RLKRS Sbjct: 124 VAGGSLYVPGSLSAALLSARYGKHG-MVGVEALSTREVIVAQMTADGLTIGEIADRLKRS 182 Query: 182 PKTISNQKVAAMKKLGVSNDVELSRVFQSL 211 PKTISNQKVAAMKKLGV NDVEL+ V + L Sbjct: 183 PKTISNQKVAAMKKLGVKNDVELAAVLREL 212 >ref|YP_003750643.1| capsular synthesis response regulator transcription regulator protein (rcsb) [Ralstonia solanacearum PSI07] emb|CBJ36046.1| putative capsular synthesis response regulator transcription regulator protein (rcsB) [Ralstonia solanacearum PSI07] emb|CCA83592.1| putative capsular synthesis response regulator transcription regulator protein (rcsB) [blood disease bacterium R229] emb|CCA87259.1| putative capsular synthesis response regulator transcription regulator protein (rcsB) [Ralstonia syzygii R24] Length = 221 Score = 224 bits (571), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 119/210 (56%), Positives = 156/210 (74%), Gaps = 1/210 (0%) Query: 2 IRVGIADDYPVVLRGIEAILSPCPDMQLAFSAESIAQLMTCLAQTPIDVLLCDYAFDDDP 61 I+VGIADD+P+VL G ++L PD+++ F+ E+I QL+ L + P+D+LLCDY F+ DP Sbjct: 4 IKVGIADDHPIVLLGATSMLKDHPDIEVVFTCETIEQLLEQLVEHPVDILLCDYEFESDP 63 Query: 62 QADGLDLLKRLRRHHPELKIIFLSAHAQPQIISSALELGAAGFIGKNRTDFVNLPQAIYC 121 QADGL LL+RLRR PE +I+ LSAH+ P I+S+ L LGA+GFIGK+R DF NL A+ Sbjct: 64 QADGLHLLQRLRRLVPETRILLLSAHSTPSIVSATLGLGASGFIGKSRADFGNLATAVRK 123 Query: 122 VQAGQVYLPQSLSASLLGSLYSVHSRQTGLGQLSERELVVARMICQGMSIAAIAERLKRS 181 V +G +Y+P SLSA+LL + Y S G+ LS RE++VA+M G++I IA RLKRS Sbjct: 124 VASGSLYVPGSLSAALLSARYG-KSGIVGMEALSTREVIVAQMTADGLTIGEIAARLKRS 182 Query: 182 PKTISNQKVAAMKKLGVSNDVELSRVFQSL 211 PKTISNQKVAAMKKLGV NDVEL+ V + L Sbjct: 183 PKTISNQKVAAMKKLGVKNDVELAAVLREL 212 >ref|YP_003609631.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002] gb|ADG20120.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] Length = 216 Score = 223 bits (567), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 107/203 (52%), Positives = 140/203 (68%) Query: 2 IRVGIADDYPVVLRGIEAILSPCPDMQLAFSAESIAQLMTCLAQTPIDVLLCDYAFDDDP 61 IRV IADD+P +L G+E +L CPDM++ F +E+I QL+ L + P+DVL+CDY F+ DP Sbjct: 4 IRVAIADDHPFILLGVEQLLQRCPDMRVCFKSETIGQLLQLLVEVPVDVLVCDYEFEGDP 63 Query: 62 QADGLDLLKRLRRHHPELKIIFLSAHAQPQIISSALELGAAGFIGKNRTDFVNLPQAIYC 121 ADGL+LL R+RR P ++++FLS H+ IIS+AL GAAGF+GK FV+L AI Sbjct: 64 YADGLNLLDRIRRVAPAIRVVFLSTHSSTHIISAALNAGAAGFVGKGPEGFVSLTAAIRA 123 Query: 122 VQAGQVYLPQSLSASLLGSLYSVHSRQTGLGQLSERELVVARMICQGMSIAAIAERLKRS 181 + V+LP S+++ +L + + L LS+ E V RMIC GMSIA IAERL RS Sbjct: 124 AKNKSVFLPDSIASKMLRAKTRAAEGGSSLHLLSKNESTVVRMICDGMSIATIAERLNRS 183 Query: 182 PKTISNQKVAAMKKLGVSNDVEL 204 PKT+SNQK A MKKLG NDVEL Sbjct: 184 PKTVSNQKNAGMKKLGARNDVEL 206 >ref|ZP_04947578.1| Response regulator [Burkholderia dolosa AUO158] gb|EAY70749.1| Response regulator [Burkholderia dolosa AUO158] Length = 221 Score = 215 bits (548), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 112/212 (52%), Positives = 156/212 (73%), Gaps = 1/212 (0%) Query: 2 IRVGIADDYPVVLRGIEAILSPCPDMQLAFSAESIAQLMTCLAQTPIDVLLCDYAFDDDP 61 IRV +ADD+P+VL GI+ IL PD++++F A++I L+ + + PIDVL+CDY F+DD Sbjct: 8 IRVAVADDHPIVLVGIKGILMDAPDIEVSFLADNIKTLLEKVREEPIDVLVCDYEFEDDK 67 Query: 62 QADGLDLLKRLRRHHPELKIIFLSAHAQPQIISSALELGAAGFIGKNRTDFVNLPQAIYC 121 +ADGL+LL+RL + P+ +++FLS+H+ I+S+AL GAAGFIGK++ DF L AI Sbjct: 68 EADGLNLLRRLIQLVPDTRVLFLSSHSATHIVSAALAGGAAGFIGKSKADFAVLADAIRR 127 Query: 122 VQAGQVYLPQSLSASLLGSLYSVHSRQ-TGLGQLSERELVVARMICQGMSIAAIAERLKR 180 V G+ Y+P S++ +L +++S +RQ TG+ LS REL V R+IC G SIA IAER+ R Sbjct: 128 VHGGETYIPPSIATEILANVFSSRTRQTTGVDTLSPRELEVVRLICAGHSIAEIAERVCR 187 Query: 181 SPKTISNQKVAAMKKLGVSNDVELSRVFQSLG 212 SPKTISNQK AAM+KL V NDVEL+R + LG Sbjct: 188 SPKTISNQKNAAMRKLAVRNDVELARAARDLG 219 >gb|AEG72245.1| capsular synthesis response regulator protein [Ralstonia solanacearum Po82] Length = 219 Score = 215 bits (548), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 123/210 (58%), Positives = 157/210 (74%), Gaps = 1/210 (0%) Query: 2 IRVGIADDYPVVLRGIEAILSPCPDMQLAFSAESIAQLMTCLAQTPIDVLLCDYAFDDDP 61 I+VGIADD+P+VL G ++L PD+++ F+ E+I QL+ LAQ P+DVLLCDY F+ DP Sbjct: 4 IKVGIADDHPIVLLGATSMLKDHPDIEIIFTCETIEQLLKQLAQHPVDVLLCDYEFESDP 63 Query: 62 QADGLDLLKRLRRHHPELKIIFLSAHAQPQIISSALELGAAGFIGKNRTDFVNLPQAIYC 121 QADGL LL+RLRR P+ +I+ LSAH+ P I+S+ L LGA+GFIGK+RTDF NL A+ Sbjct: 64 QADGLHLLQRLRRLVPDTRILLLSAHSTPSIVSATLGLGASGFIGKSRTDFGNLAAAVRK 123 Query: 122 VQAGQVYLPQSLSASLLGSLYSVHSRQTGLGQLSERELVVARMICQGMSIAAIAERLKRS 181 V G +Y+P SLSA+LL + Y S G+ LS RE+VVA+M G++I IA RLKRS Sbjct: 124 VAGGSLYVPSSLSAALLSARYG-KSGIVGMEALSTREVVVAQMTADGLTIGEIAARLKRS 182 Query: 182 PKTISNQKVAAMKKLGVSNDVELSRVFQSL 211 PKTISNQKVAAMKKLGV NDVEL+ V + L Sbjct: 183 PKTISNQKVAAMKKLGVKNDVELAAVLREL 212 >ref|YP_002907893.1| LuxR family transcriptional regulator [Burkholderia glumae BGR1] gb|ACR30658.1| LuxR family transcriptional regulator [Burkholderia glumae BGR1] Length = 215 Score = 212 bits (539), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 105/209 (50%), Positives = 145/209 (69%), Gaps = 1/209 (0%) Query: 2 IRVGIADDYPVVLRGIEAILSPCPDMQLAFSAESIAQLMTCLAQTPIDVLLCDYAFDDDP 61 I VG+ADD+PVVL+G++ +L PD+ L F ++I L+ L ++P+DVLLCDY F+ DP Sbjct: 4 ITVGVADDHPVVLQGVQHMLLSSPDIDLHFQIDAIKPLLVQLVESPVDVLLCDYEFEGDP 63 Query: 62 QADGLDLLKRLRRHHPELKIIFLSAHAQPQIISSALELGAAGFIGKNRTDFVNLPQAIYC 121 +ADGL LL R+RR P +++FLS H +S+AL GA+GFIGK R DF NL AI+ Sbjct: 64 EADGLHLLGRIRRIAPHTRVLFLSCHCAAYTVSAALSAGASGFIGKRREDFANLITAIHA 123 Query: 122 VQAGQVYLPQSLSASLLGSL-YSVHSRQTGLGQLSERELVVARMICQGMSIAAIAERLKR 180 V++ YL S+++ LL + ++ + L +LS +E V R+IC G+SI IA+RLKR Sbjct: 124 VKSRGFYLADSIASRLLATTGHATNDICLSLNKLSAKEAAVVRLICNGLSINDIAKRLKR 183 Query: 181 SPKTISNQKVAAMKKLGVSNDVELSRVFQ 209 SPKTISNQK A MKKLGV ND+EL+ V + Sbjct: 184 SPKTISNQKNAGMKKLGVKNDIELASVMR 212 >ref|ZP_02906947.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gb|EDT41905.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] Length = 218 Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 90/212 (42%), Positives = 130/212 (61%), Gaps = 1/212 (0%) Query: 2 IRVGIADDYPVVLRGIEAILSPCPDMQLAFSAESIAQLMTCLAQTPIDVLLCDYAFDDDP 61 IRVG+ADD+PVVL GIE ++ P +++AF A+++A ++ + PIDVL+CDY F D+P Sbjct: 4 IRVGVADDHPVVLAGIENLIKNAPGLEIAFLADTMAAMIEAIESQPIDVLVCDYEFSDEP 63 Query: 62 QADGLDLLKRLRRHHPELKIIFLSAHAQPQIISSALELGAAGFIGKNRTDFVNLPQAIYC 121 DGL+LL +RR P LK++ S P I+S+AL GA GFIGK + + L +AI Sbjct: 64 LTDGLNLLASIRRRFPALKVLLTSTRTAPGIVSAALIYGATGFIGKVQANPSTLTRAILA 123 Query: 122 VQAGQVYLPQSLSASLLGSLYSVHSRQTGLG-QLSERELVVARMICQGMSIAAIAERLKR 180 V AG +YL ++L V + LS+ EL V +IC+ +++ IA RL R Sbjct: 124 VHAGSIYLSPEFDGNVLSCFLRVIRAFNAVPVALSDLELQVVGLICRDVAMPEIARRLNR 183 Query: 181 SPKTISNQKVAAMKKLGVSNDVELSRVFQSLG 212 SP TI+ +K AAMKKL +D EL + + +G Sbjct: 184 SPGTIAGRKRAAMKKLAAGSDAELKSIARDMG 215 >ref|ZP_02906942.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gb|EDT41900.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] Length = 226 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 91/207 (43%), Positives = 137/207 (66%), Gaps = 4/207 (1%) Query: 2 IRVGIADDYPVVLRGIEAILSPCPDMQLAFSAESIAQLMTCLAQTPIDVLLCDYAFDDDP 61 I VGIAD+ P+V+ GI +IL+ D+++ F A +++++ LA IDVLL + FD D Sbjct: 4 ISVGIADNQPIVVHGIRSILASYHDIEIRFLATNLSEMFGFLACEQIDVLLTNDRFDGDI 63 Query: 62 QADGLDLLKRLRRHHPELKIIFLSAHAQPQIISSALELGAAGFIGKNRTDFVNLPQAIYC 121 DG+ +L R++R P+ K++ AH + +IS + GAAGF+G+++ F +L AI Sbjct: 64 LPDGVRMLARIQRDAPDTKVLIFGAHEKTYVISHLISSGAAGFVGRSKECFSDLGLAIRH 123 Query: 122 VQAGQV-YLPQSLSASLLGSLYSVHSRQT-GLGQLSERELVVARMICQGMSIAAIAERLK 179 V ++ YLP S++ SLL +S+ R + LSE+E+ VA +I G+SIA I++RL Sbjct: 124 VATQRIPYLPPSIANSLL--YFSLTKRHHLSIELLSEKEMAVATLIRDGLSIAEISKRLC 181 Query: 180 RSPKTISNQKVAAMKKLGVSNDVELSR 206 RSPKTISNQK +A+KKLGV NDVEL++ Sbjct: 182 RSPKTISNQKNSAIKKLGVRNDVELAK 208