BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0081.p (305 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_523181.1| capsular synthesis two-component sensor kinase ... 149 7e-34 emb|CCA83593.1| putative capsular synthesis two-component sensor... 147 2e-33 ref|YP_003750644.1| capsular synthesis two-component sensor kina... 147 2e-33 ref|YP_003375798.1| two-component system sensor-response regulat... 147 2e-33 emb|CCA87260.1| putative capsular synthesis two-component sensor... 133 4e-29 ref|ZP_06729455.1| capsular synthesis regulatory two-component s... 132 5e-29 emb|CAQ18308.1| probable sensor histidine kinase transmembrane (... 127 2e-27 ref|ZP_04947579.1| Signal transduction histidine kinase [Burkhol... 115 1e-23 >ref|NP_523181.1| capsular synthesis two-component sensor kinase and response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] emb|CAD18773.1| probable capsular synthesis regulatory (two-component sensor kinase and response regulator hybrid) transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 1098 Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 97/275 (35%), Positives = 149/275 (54%), Gaps = 9/275 (3%) Query: 1 MPRQILALSERYYRRLLYGCAGLLSVAILCAMLFLGYSAFSQFRERQIGTFTSKREQIKA 60 MP+++L + RY RR+LYGC LS+AI+ A+L LG Q+ +RQ+ F +++ Sbjct: 1 MPQRLLTKTGRYSRRVLYGCTAALSIAIVGAVLLLGRGIIDQYGDRQVARFVRTSGEVRT 60 Query: 61 EVDRLTARVNQFAEMYGRLQHLYKKELLALDAYTDPVGSEQ-ISDSPANLTVVPFSLLVR 119 EVD L+AR+ QFA++Y + +L + +++ Y + +++ + + A+LT P +L+ Sbjct: 61 EVDGLSARLAQFADLYEGVWNLRQNDVVPTRRYAGKLAADRGATVTGADLTATPVTLISS 120 Query: 120 REAAADRMRLASLLLLLRQASALPMFNPAEPGVTLDGFIYTADAAFLAVSPPLEQAEQAE 179 + AD RLA L +LR S P+ + + GVTLDGF+YT DA FLA P L A+ Sbjct: 121 LDRPADGARLAMALRVLRDVSGAPLMDAQKLGVTLDGFLYTPDATFLAAFPALRPADLRS 180 Query: 180 VRQQGVAAFISAMSAPVNAAFAAERERAARAQGSSGQRFLWMSPALSAPLVRQAVTRLAV 239 R+QG FI A V A+ A R G+R LW PA +V++L V Sbjct: 181 AREQGPQPFIRERIAAVEQRIASSAPEAVR-----GRRPLWY-PA-DETNGHASVSQLIV 233 Query: 240 RIALDKGDEATAVFSVPASQFRQFFMXPSSRCRPA 274 + D T ++P +QF +FF+ SR RP Sbjct: 234 PMYRDNARVLTIALTLPDAQFTRFFLRKESR-RPG 267 >emb|CCA83593.1| putative capsular synthesis two-component sensor kinase and response regulator transcription regulator protein (rcsC) [blood disease bacterium R229] Length = 1098 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 95/275 (34%), Positives = 150/275 (54%), Gaps = 9/275 (3%) Query: 1 MPRQILALSERYYRRLLYGCAGLLSVAILCAMLFLGYSAFSQFRERQIGTFTSKREQIKA 60 MP+++L ++RY RR+LYGC LSVAI+ +L LG Q+ ++Q+ F +++ Sbjct: 1 MPQRLLTKTDRYSRRVLYGCTAALSVAIVGTVLLLGRGIIDQYGDKQVARFVRTSGEVQT 60 Query: 61 EVDRLTARVNQFAEMYGRLQHLYKKELLALDAYTDPVGSEQ-ISDSPANLTVVPFSLLVR 119 EVD L+AR+ QFA++Y + +L + +++ + Y + S++ ++ + A+LT P +L+ Sbjct: 61 EVDELSARLAQFADLYEGVWNLRQNDVVPMRRYVGKLASDRGVTVTGADLTATPVTLISS 120 Query: 120 REAAADRMRLASLLLLLRQASALPMFNPAEPGVTLDGFIYTADAAFLAVSPPLEQAEQAE 179 AD RLA L +LR S P+ + + GVTLDGF+Y DA FLA P + A+ Sbjct: 121 LGRPADGARLAMALRVLRDVSGAPLMDAQKTGVTLDGFLYAPDATFLAAFPAMGPADLQR 180 Query: 180 VRQQGVAAFISAMSAPVNAAFAAERERAARAQGSSGQRFLWMSPALSAPLVRQAVTRLAV 239 R+QG AFI A V AA + R+ +R LW PA A +V++L V Sbjct: 181 AREQGPQAFIRERIAAVEQRIAASAPQTVRS-----RRPLWY-PADEAN-GHASVSQLIV 233 Query: 240 RIALDKGDEATAVFSVPASQFRQFFMXPSSRCRPA 274 + + T ++P QF +FF+ SR RP Sbjct: 234 PMYREHERVLTIALTLPDQQFTRFFLRKESR-RPG 267 >ref|YP_003750644.1| capsular synthesis two-component sensor kinase and response regulator transcription regulator protein (rcsc) [Ralstonia solanacearum PSI07] emb|CBJ36047.1| putative capsular synthesis two-component sensor kinase and response regulator transcription regulator protein (rcsC) [Ralstonia solanacearum PSI07] Length = 1098 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 95/275 (34%), Positives = 150/275 (54%), Gaps = 9/275 (3%) Query: 1 MPRQILALSERYYRRLLYGCAGLLSVAILCAMLFLGYSAFSQFRERQIGTFTSKREQIKA 60 MP+++L ++RY RR+LYGC LSVAI+ +L LG Q+ ++Q+ F +++ Sbjct: 1 MPQRLLTKTDRYSRRVLYGCTAALSVAIVGTVLLLGRGIIDQYGDKQVARFVRTSGEVQT 60 Query: 61 EVDRLTARVNQFAEMYGRLQHLYKKELLALDAYTDPVGSEQ-ISDSPANLTVVPFSLLVR 119 EVD L+AR+ QFA++Y + +L + +++ + Y + S++ ++ + A+LT P +L+ Sbjct: 61 EVDELSARLAQFADLYEGVWNLRQNDVVPMRRYVGKLASDRGVTVTGADLTATPVTLISS 120 Query: 120 REAAADRMRLASLLLLLRQASALPMFNPAEPGVTLDGFIYTADAAFLAVSPPLEQAEQAE 179 AD RLA L +LR S P+ + + GVTLDGF+Y DA FLA P + A+ Sbjct: 121 LGRPADGARLAMALRVLRDVSGAPLMDAQKTGVTLDGFLYAPDATFLAAFPAMGPADLQR 180 Query: 180 VRQQGVAAFISAMSAPVNAAFAAERERAARAQGSSGQRFLWMSPALSAPLVRQAVTRLAV 239 R+QG AFI A V AA + R+ +R LW PA A +V++L V Sbjct: 181 AREQGPQAFIRERIAAVEQRIAASAPQTVRS-----RRPLWY-PADEAN-GHASVSQLIV 233 Query: 240 RIALDKGDEATAVFSVPASQFRQFFMXPSSRCRPA 274 + + T ++P QF +FF+ SR RP Sbjct: 234 PMYREHERVLTIALTLPDQQFTRFFLRKESR-RPG 267 >ref|YP_003375798.1| two-component system sensor-response regulator hybrid protein [Xanthomonas albilineans GPE PC73] emb|CBA15810.1| probable two-component system sensor-response regulator hybrid protein [Xanthomonas albilineans] Length = 1097 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 101/277 (36%), Positives = 153/277 (55%), Gaps = 13/277 (4%) Query: 1 MPRQILALSERYYRRLLYGCAGLLSVAILCAMLFLGYSAFSQFRERQIGTFTSKREQIKA 60 MP+++LA + RYYRR+LYG A LSV+I+ A L Q+R++QI F E+++ Sbjct: 1 MPQKLLARTGRYYRRILYGAATALSVSIVAAALLFCSGIIDQYRDKQIAQFVKSSEEVQT 60 Query: 61 EVDRLTARVNQFAEMYGRLQHLYKKELLALDAYTDPVG-SEQISDSPANLTVVPFSLLVR 119 +VD L+AR+ QFA++Y + +L + +++ + Y + + ++ + +LT VPF+L+ Sbjct: 61 QVDELSARLVQFADLYEGVWNLRQNDVVPVQRYARKLAEGKGVTVTEDDLTAVPFTLVSS 120 Query: 120 REAAADRMRLASLLLLLRQASALPMFNPAEPGVTLDGFIYTADAAFLAVSPPLEQAEQAE 179 AD RLA+ L ++R SA P + + GVTLDGF+Y+ DA F+AVSP + A+ Sbjct: 121 LNGTADAARLATALRVVRDMSAAPSIDAKKTGVTLDGFLYSPDATFMAVSPAMGLAQLQS 180 Query: 180 VRQQGVAAFI-SAMSAPVNAAFAAERERAAR-AQGSSGQRFLWMSPALSAPLVRQAVTRL 237 R GV AFI + P ER AA AQ QR LW PA +V++L Sbjct: 181 ARSDGVRAFIRQHIDEP-------ERLIAATPAQDLRSQRPLW-RPADERD-GGLSVSQL 231 Query: 238 AVRIALDKGDEATAVFSVPASQFRQFFMXPSSRCRPA 274 V + D T S+P QF +FF+ +R RP Sbjct: 232 IVPMFRDGRRIFTIALSLPDRQFMRFFLRKETR-RPG 267 >emb|CCA87260.1| putative capsular synthesis two-component sensor kinase and response regulator transcription regulator protein (rcsC) [Ralstonia syzygii R24] Length = 1083 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 138/260 (53%), Gaps = 9/260 (3%) Query: 16 LLYGCAGLLSVAILCAMLFLGYSAFSQFRERQIGTFTSKREQIKAEVDRLTARVNQFAEM 75 +LYGC LS+AI+ +L LG Q+ ++Q+ F +++ EVD L+AR+ QFA++ Sbjct: 1 MLYGCTAALSIAIVGTVLLLGRGIIDQYGDKQVARFVRTSGEVQTEVDELSARLAQFADL 60 Query: 76 YGRLQHLYKKELLALDAYTDPVGSEQ-ISDSPANLTVVPFSLLVRREAAADRMRLASLLL 134 Y + +L + +++ + Y + S++ ++ + A+LT P +L+ AD RLA L Sbjct: 61 YEGVWNLRQNDVVPMRRYVGKLASDRGVTVTGADLTATPVTLISSLGRPADGARLAMALR 120 Query: 135 LLRQASALPMFNPAEPGVTLDGFIYTADAAFLAVSPPLEQAEQAEVRQQGVAAFISAMSA 194 +LR S P+ N + GVTLDGF+Y DA FLA P + A+ R+QG AFI A Sbjct: 121 VLRDVSGAPLMNAQKTGVTLDGFLYAPDATFLAAFPAMGPADLQRAREQGPQAFIRERIA 180 Query: 195 PVNAAFAAERERAARAQGSSGQRFLWMSPALSAPLVRQAVTRLAVRIALDKGDEATAVFS 254 V AA + R+ +R LW PA A +V++L V + + T + Sbjct: 181 AVEQRIAASAPQTVRS-----RRPLWY-PADEAN-GHASVSQLIVPMYREHERVLTIALT 233 Query: 255 VPASQFRQFFMXPSSRCRPA 274 +P QF +FF+ SR RP Sbjct: 234 LPDQQFTRFFLRKESR-RPG 252 >ref|ZP_06729455.1| capsular synthesis regulatory two-component sensor kinase and response regulator hybrid transcription regulator protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gb|EFF49425.1| capsular synthesis regulatory two-component sensor kinase and response regulator hybrid transcription regulator protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 1092 Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 87/275 (31%), Positives = 145/275 (52%), Gaps = 9/275 (3%) Query: 1 MPRQILALSERYYRRLLYGCAGLLSVAILCAMLFLGYSAFSQFRERQIGTFTSKREQIKA 60 MP+++LA + RYYRR+LYG A LS++I+ A + Q+R++Q ++++ Sbjct: 1 MPQKLLARTGRYYRRILYGAATALSLSIVTAAVLFCSGIIDQYRDKQAAQLAKYSDEVQT 60 Query: 61 EVDRLTARVNQFAEMYGRLQHLYKKELLALDAYTDPVGSEQ-ISDSPANLTVVPFSLLVR 119 +VD L+AR+ QF ++Y + +L + + + Y + Q ++ + ++T PF+L+ Sbjct: 61 QVDELSARLIQFGDVYEGVWNLRRNGEVPVQRYARKLAEGQGVTVTQDDVTATPFTLVSS 120 Query: 120 REAAADRMRLASLLLLLRQASALPMFNPAEPGVTLDGFIYTADAAFLAVSPPLEQAEQAE 179 +AD RLA+ L ++R SA + + + GVTL+GF+YT D +FLA SP ++ + Sbjct: 121 LSGSADTDRLATALRVVRDISAASLIDARKTGVTLEGFLYTPDGSFLAASPVIKMDALRD 180 Query: 180 VRQQGVAAFISAMSAPVNAAFAAERERAARAQGSSGQRFLWMSPALSAPLVRQAVTRLAV 239 R GV FI A V AA R R LW PA A + ++++L V Sbjct: 181 ARDHGVEDFIRKRIAGVEHLVAAIPPHTLR-----NDRLLW-RPA-DASDGQTSISQLVV 233 Query: 240 RIALDKGDEATAVFSVPASQFRQFFMXPSSRCRPA 274 + D + T S+P QF +FF+ +R RP Sbjct: 234 PMFHDGRRQFTIALSLPDRQFMRFFLREEAR-RPG 267 >emb|CAQ18308.1| probable sensor histidine kinase transmembrane (partial sequence n terminus) protein [Ralstonia solanacearum MolK2] Length = 869 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/256 (32%), Positives = 132/256 (51%), Gaps = 8/256 (3%) Query: 16 LLYGCAGLLSVAILCAMLFLGYSAFSQFRERQIGTFTSKREQIKAEVDRLTARVNQFAEM 75 +LYGC LS+AI+ A+L G Q+ ++Q+ F +++ EVD L+AR+ QFA++ Sbjct: 1 MLYGCTVALSIAIVGAVLLFGRGMIDQYGDKQVARFVRTSGEVQTEVDELSARLAQFADL 60 Query: 76 YGRLQHLYKKELLALDAYTDPV-GSEQISDSPANLTVVPFSLLVRREAAADRMRLASLLL 134 Y + L + +++ + Y + G + ++ + A+LT P +L+ AD RLA L Sbjct: 61 YEGVWTLRQNDVVPMRRYVGKLAGDKGVTVTGADLTATPVTLISSLTKPADGARLAMALR 120 Query: 135 LLRQASALPMFNPAEPGVTLDGFIYTADAAFLAVSPPLEQAEQAEVRQQGVAAFISAMSA 194 +LR S P+ + + GVTLDGF+Y DA FLA P + A+ R+QG +FI A Sbjct: 121 VLRDVSGAPLMDAQKTGVTLDGFLYAPDATFLAAFPVMGPADLQRAREQGPQSFIRDRIA 180 Query: 195 PVNAAFAAERERAARAQGSSGQRFLWMSPALSAPLVRQAVTRLAVRIALDKGDEATAVFS 254 V A R+ +R LW PA A +V+RL V + + T + Sbjct: 181 AVEQLIAESAPWTLRS-----RRPLWY-PAGEAN-GHASVSRLIVPMYREHERVLTIALT 233 Query: 255 VPASQFRQFFMXPSSR 270 +P QF +FF+ SR Sbjct: 234 LPDEQFTRFFLRKESR 249 >ref|ZP_04947579.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158] gb|EAY70750.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158] Length = 1104 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 87/265 (32%), Positives = 139/265 (52%), Gaps = 11/265 (4%) Query: 6 LALSERYYRRLLYGCAGLLSVAI-LCAMLFLGYSAFSQFRERQIGTFTSKREQIKAEVDR 64 LA + R++RR+LYG A LLS I A LF+G SA ++F E + T +E +AEV R Sbjct: 8 LAQTARFHRRVLYGFAVLLSATIGGGATLFVG-SAVTRFFEARQNTLVRNQEHAQAEVVR 66 Query: 65 LTARVNQFAEMYGRLQHLYKKELLALDAYTDPVGSEQ-ISDSPANLTVVPFSLLVRREAA 123 L++R+ A++Y + +E + LD Y + I + ++L V PF L+ + A Sbjct: 67 LSSRLMNMADLYEGNWAFHNQEAIPLDRYRQALRDHHGIVTTGSDLAVTPFLLVGTQPDA 126 Query: 124 ADRMRLASLLLLLRQASALPMFNPAEPGVTLDGFIYTADAAFLAVSPPLEQAEQAEVRQQ 183 DR RL+++L ++R+ SA P+F+ GVT+ GF+Y++D LA +P + +Q Sbjct: 127 DDRGRLSTMLHIVRRISADPVFD-IRRGVTVSGFVYSSDRTILAAAPVTAPFLTPDDLEQ 185 Query: 184 GVAAFISAMSAPVNAAFAAERERAARAQGSSGQRFLWMSPALSAPLVRQAVTRLAVRIAL 243 FI A + P+ ++ E R R LW+ AL P+ ++A+ + V I Sbjct: 186 DARTFIHANADPIEDRLQSQSEAQLRK-----SRPLWI--ALEDPVRQRALAEIVVPIFH 238 Query: 244 DKGDEATAVFSVPASQFRQFFMXPS 268 + AT V VP QF +F+ S Sbjct: 239 GRERVATIVGRVPRDQFLHYFLDAS 263