BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0069.p (201 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777037.1| Type IV pilus assembly protein [Herbaspirill... 302 1e-80 ref|YP_523909.1| hypothetical protein Rfer_2662 [Rhodoferax ferr... 84 2e-14 ref|ZP_08872941.1| putative transmembrane protein [Verminephroba... 79 3e-13 ref|YP_997580.1| hypothetical protein Veis_2824 [Verminephrobact... 75 6e-12 emb|CBJ38938.1| Putative type IV pilus assembly protein PilX [Ra... 69 3e-10 ref|ZP_08272565.1| Type IV fimbrial biogenesis protein PilX [Oxa... 68 8e-10 >ref|YP_003777037.1| Type IV pilus assembly protein [Herbaspirillum seropedicae SmR1] gb|ADJ65129.1| Type IV pilus assembly protein [Herbaspirillum seropedicae SmR1] Length = 152 Score = 302 bits (774), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 150/152 (98%), Positives = 151/152 (99%) Query: 50 LAAQAALDDACLDLRQGRAPSKDAAAPQAGCRHDPAGAGWCLGRAHRSTWQSAQLHGAQA 109 +AAQAALDDACLDLRQGRAPSKDAAAPQAGCRHDPAGAGWCLGRAHRSTWQSAQLHGAQA Sbjct: 1 MAAQAALDDACLDLRQGRAPSKDAAAPQAGCRHDPAGAGWCLGRAHRSTWQSAQLHGAQA 60 Query: 110 ISAQYGQFTGRRFPALPGISPPRYLIEQLTDGAAATGADDTTTALYRLNAIGYGRDGAQV 169 ISAQYGQFTGRRFPALPGISPPRYLIEQLTDGAAATGADDTTTALYRLNAIGYGRDGAQV Sbjct: 61 ISAQYGQFTGRRFPALPGISPPRYLIEQLTDGAAATGADDTTTALYRLNAIGYGRDGAQV 120 Query: 170 ALQALVRHPDPHAAPASCRTLAWRPLSLPDME 201 ALQALVRHPDPHAAPASCRTLAWRPL LPDME Sbjct: 121 ALQALVRHPDPHAAPASCRTLAWRPLFLPDME 152 >ref|YP_523909.1| hypothetical protein Rfer_2662 [Rhodoferax ferrireducens T118] gb|ABD70378.1| putative transmembrane protein [Rhodoferax ferrireducens T118] Length = 208 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 90/192 (46%), Gaps = 18/192 (9%) Query: 3 HTRQRGATLMIALTLLSLILLLGAAATSLLLLSEQAARNHAEHAQAHLAAQAALDDACLD 62 ++QRG +L+ L LL ++ +LG A+ ++LLSE+A R + A AA+AAL DA D Sbjct: 17 RSKQRGFSLITTLILLIVVTVLGIGASQMVLLSERATRFDRDTQIAFQAAEAALIDAEFD 76 Query: 63 LRQGRAPSKDAAAPQAGCRH----DPAGAGWCLG------RAHRSTWQSAQL--HGAQAI 110 +R + A + D G G LG + W S + A Sbjct: 77 IRGPNTSTTQRVASFSASSELGFMDGCGTGASLGLCLPAADGQKPIWYSVDFTDESSSAK 136 Query: 111 SAQYGQFTGRRF-PALPGISP---PRYLIEQLTDGAAATGADDTTTALYRLNAIGYG-RD 165 + ++G FTGR F GI P PRY+IE L D A T L+R+ A+G+G R Sbjct: 137 TVKFGDFTGRTFATGTSGIRPEIAPRYIIEVLPDKTPGRSASAQKT-LFRVTAMGFGPRK 195 Query: 166 GAQVALQALVRH 177 Q +Q + R Sbjct: 196 ETQAVVQMIFRK 207 >ref|ZP_08872941.1| putative transmembrane protein [Verminephrobacter sp. At4] Length = 191 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 93/191 (48%), Gaps = 24/191 (12%) Query: 10 TLMIALTLLSLILLLGAAATSLLLLSEQAARNHAEHAQAHLAAQAALDDACLDLRQGRAP 69 +L+I + +L ++ LLG A + +++E+ RN + A AA+AAL DA +D+ A Sbjct: 2 SLIIVMLILIVVSLLGIAGARIAMMAERGTRNDRDLQIAWQAAEAALVDAEMDIEGQPAS 61 Query: 70 S---KDAAAPQ---------AGCRHDPAGAGWCL--GRAHRSTWQSAQLH--GAQAISAQ 113 S ++A Q +GC G C + W + G A + + Sbjct: 62 STNKRNAVFKQGDVDLSQFVSGCGSTGTSIGLCSLNPKEENPAWLAVNFEKTGTDARTVE 121 Query: 114 YGQFTGRRFPA----LPGISPPRYLIEQLTDGAAATGADD--TTTALYRLNAIGYGRDG- 166 +G+FTGR FPA + + PPRY+IE + D +T D LYR+ A+G+G G Sbjct: 122 FGKFTGRNFPAGARGIQPVKPPRYVIEPIPD-EESTMIDTPAKKKFLYRITAMGFGPKGD 180 Query: 167 AQVALQALVRH 177 QV LQ + R+ Sbjct: 181 TQVVLQMIYRN 191 >ref|YP_997580.1| hypothetical protein Veis_2824 [Verminephrobacter eiseniae EF01-2] gb|ABM58562.1| putative transmembrane protein [Verminephrobacter eiseniae EF01-2] Length = 221 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 32/204 (15%) Query: 5 RQRGATLMIALTLLSLILLLGAAATSLLLLSEQAARNHAEHAQAHLAAQAALDDACLDLR 64 RQRG +L+I + +L ++ +LG + +++E+ RN + A AA+A L DA D+ Sbjct: 19 RQRGLSLIIVMLILIVVSILGVGGMRIAMMAERGTRNDRDMQIAWQAAEAGLVDAEFDIT 78 Query: 65 QGRAPSK------------DAAAPQAGCRHDPAGAGWCLGRAH-RSTWQSAQLHG--AQA 109 A S D A C G C +A + W + A Sbjct: 79 GQSANSTSNRSAVFKHNEVDLAKFIDNCGSADQSIGLCTLKATGKPVWLTVDFEATDGNA 138 Query: 110 ISAQYGQFTGRRFPALP-GISP---PRYLIEQL-----------TDGAAATGADDTTTAL 154 + ++G++TGR FP P GI P PRYLIE + T+ TG+ +T + + Sbjct: 139 KTVEFGKYTGRAFPTGPTGIRPAQKPRYLIEIIPDQHGTRSFRTTNQNELTGS-ETLSYV 197 Query: 155 YRLNAIGYGRDG-AQVALQALVRH 177 YR+ A+G+G + AQ LQ + R+ Sbjct: 198 YRVTAMGFGPNKEAQAVLQMIYRN 221 >emb|CBJ38938.1| Putative type IV pilus assembly protein PilX [Ralstonia solanacearum CMR15] Length = 220 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 93/207 (44%), Gaps = 32/207 (15%) Query: 5 RQRGATLMIALTLLSLILLLGAAATSLLLLSEQAARNHAEHAQAHLAAQAALDDACLDLR 64 R G L+ AL +L +I +L L L S++ +RN +++ A AA+AAL DA D++ Sbjct: 11 RPAGFALITALIMLLVITILALGGARLALDSKRISRNQRDNSIAFQAAEAALRDAEHDIQ 70 Query: 65 QGRAPSKDAAAPQAGCRHDPAGAGWCLGRAHRS------------------TWQ--SAQL 104 + + + + P A CL + W S + Sbjct: 71 NAGSVATSRSNNFVRTSYQPFPASGCLAGGPENALPTRLRGLCATTDDTNPIWNIVSWKD 130 Query: 105 HGAQAISAQYGQFTGRRFPALPGISP---PRYLIEQLTDGAAA-----TGADDTTTA--- 153 G+ A + YG FTG FPA PG+ PRY+IE L D A TG +D + Sbjct: 131 SGSDAQTVGYGDFTGATFPAGPGVMSSQRPRYIIEALVDKDAGQRADKTGGNDNDLSPAY 190 Query: 154 LYRLNAIGYGRDG-AQVALQALVRHPD 179 ++R+ A+G+G G A V LQ+ R D Sbjct: 191 IFRITAVGWGPYGSAPVMLQSYYRKGD 217 >ref|ZP_08272565.1| Type IV fimbrial biogenesis protein PilX [Oxalobacteraceae bacterium IMCC9480] gb|EGF33954.1| Type IV fimbrial biogenesis protein PilX [Oxalobacteraceae bacterium IMCC9480] Length = 195 Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 89/184 (48%), Gaps = 14/184 (7%) Query: 5 RQRGATLMIALTLLSLILLLGAAATSLLLLSEQAARNHAEHAQAHLAAQAALDDACLDLR 64 R++G+TL+I + L ++ LLG +A + E+ ARN + A AA++AL DA D+ Sbjct: 13 REQGSTLLIGMLFLIILTLLGLSAALISKTDERMARNSRDRNIAFFAAESALRDARDDIH 72 Query: 65 QGRAPSKDAAAPQAGCRHDPAGAGWCLGRA--HRSTWQSAQLHGAQAISAQYGQFTG--- 119 + + A A C G CL A W++ L S +YG+ T Sbjct: 73 LPASRIQGATGALADC-SGATTKGLCLPAAAGDPQVWETTYLTDPTR-SVEYGEMTSLTA 130 Query: 120 -RRF---PALPGIS-PPRYLIEQLTD-GAAATGADDTTTALYRLNAIGYGRD-GAQVALQ 172 ++F PA G++ PPRYLIE L D + A LYR+ AIGYG + V +Q Sbjct: 131 AQKFKVAPASGGVTAPPRYLIEALPDINGVSLSAKVPQKWLYRITAIGYGANANTSVIVQ 190 Query: 173 ALVR 176 +R Sbjct: 191 ETIR 194