BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0045.p (465 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777015.1| exodeoxyribonuclease I [Herbaspirillum serop... 845 0.0 ref|YP_004751796.1| exodeoxyribonuclease I [Collimonas fungivora... 723 0.0 ref|YP_001352252.1| exonuclease I [Janthinobacterium sp. Marseil... 707 0.0 ref|ZP_04761448.1| Exodeoxyribonuclease I [Acidovorax delafieldi... 704 0.0 ref|YP_001098913.1| exonuclease I [Herminiimonas arsenicoxydans]... 702 0.0 ref|YP_002944544.1| exonuclease I [Variovorax paradoxus S110] >g... 701 0.0 ref|YP_549751.1| exonuclease I [Polaromonas sp. JS666] >gi|91698... 696 0.0 ref|YP_004155558.1| exodeoxyribonuclease i [Variovorax paradoxus... 694 0.0 ref|ZP_08274615.1| Exodeoxyribonuclease I [Oxalobacteraceae bact... 674 0.0 ref|YP_982166.1| exonuclease I [Polaromonas naphthalenivorans CJ... 672 0.0 >ref|YP_003777015.1| exodeoxyribonuclease I [Herbaspirillum seropedicae SmR1] gb|ADJ65107.1| exodeoxyribonuclease I (3'-> 5' specific) protein [Herbaspirillum seropedicae SmR1] Length = 467 Score = 845 bits (2184), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/433 (95%), Positives = 415/433 (95%), Gaps = 13/433 (3%) Query: 1 MSNHTFLWHDYETFGAVPRRDRPAQFAAVRTDAELNEIGAPIMIYCKPAPDYLPDPVSCL 60 MSNHTFLWHDYETFGAVPRRDRPAQFAAVRTDAELNEIGAPIMIYCKPAPDYLPDPVSCL Sbjct: 1 MSNHTFLWHDYETFGAVPRRDRPAQFAAVRTDAELNEIGAPIMIYCKPAPDYLPDPVSCL 60 Query: 61 ITGITPQHCLEHGLPEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA 120 ITGITPQHCL HGLPEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA Sbjct: 61 ITGITPQHCLAHGLPEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA 120 Query: 121 REWQNGCGRWDLLDVVRLTYALRPQGIQWPKKDDGSISFKLEHLSKANGLVHEAAHDALS 180 REWQNGCGRWDLLDVVRLTYALRPQGIQWPKKDDGSISFKLEHLSKANGLVHEAAHDALS Sbjct: 121 REWQNGCGRWDLLDVVRLTYALRPQGIQWPKKDDGSISFKLEHLSKANGLVHEAAHDALS 180 Query: 181 DVRATIALARLIRQNNPRLFDFALALYKKDKAAAEIGLPVPRPFLHASGMFPVAHGCLAL 240 DVRATIALARLIRQNNPRLFDFALALYKKDKAAAEIGLPVPRPFLHASGMFPVAHGCLAL Sbjct: 181 DVRATIALARLIRQNNPRLFDFALALYKKDKAAAEIGLPVPRPFLHASGMFPVAHGCLAL 240 Query: 241 MWPLGMHPTNKNEVIAWDLRHDPSELATLDAATVRERLFSKRDQLPEGVERLPVKSIHLN 300 MWPLGMHPTNKNEVIAWDLRHDPSELATLDAATVRERLFSKRDQLPEGVERLPVKSIHLN Sbjct: 241 MWPLGMHPTNKNEVIAWDLRHDPSELATLDAATVRERLFSKRDQLPEGVERLPVKSIHLN 300 Query: 301 KSPMVVGSLKTLSAERA-------------ADKAAALPDLTRLWSEVYQRESEGPADVDE 347 KSPMVVGSLKTLSAERA ADKAAALPDLTRLWSEVYQRESEGPADVDE Sbjct: 301 KSPMVVGSLKTLSAERAAELDIDVEAALRHADKAAALPDLTRLWSEVYQRESEGPADVDE 360 Query: 348 DLYGGFIGNGDRRQLNQLRALSPQALATASVAFDDARLNEILFRYRARSFPETLSPEEAQ 407 DLYGGFIGNGDRRQLNQLRALSPQALATASVAFDDARLNEILFRYRARSFPETLSPEEAQ Sbjct: 361 DLYGGFIGNGDRRQLNQLRALSPQALATASVAFDDARLNEILFRYRARSFPETLSPEEAQ 420 Query: 408 HWEEHRAARLFEG 420 HWEEHRAA G Sbjct: 421 HWEEHRAAAPVRG 433 >ref|YP_004751796.1| exodeoxyribonuclease I [Collimonas fungivorans Ter331] gb|AEK60973.1| Exodeoxyribonuclease I [Collimonas fungivorans Ter331] Length = 477 Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/478 (72%), Positives = 396/478 (82%), Gaps = 14/478 (2%) Query: 1 MSNHTFLWHDYETFGAVPRRDRPAQFAAVRTDAELNEIGAPIMIYCKPAPDYLPDPVSCL 60 MS HTFLWHDYETFG PRRDRPAQFAA+RTDAELNEIG PIM+YC+PA D+LPDP SCL Sbjct: 1 MSTHTFLWHDYETFGVQPRRDRPAQFAAIRTDAELNEIGEPIMLYCQPANDFLPDPQSCL 60 Query: 61 ITGITPQHCLEHGLPEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA 120 ITGITPQ CLE G+PE++FAA+IE+A E GTIGVGYNTIRFDDEVTRF+FWRNLIDPYA Sbjct: 61 ITGITPQQCLERGIPEYQFAAQIEKAFSEAGTIGVGYNTIRFDDEVTRFLFWRNLIDPYA 120 Query: 121 REWQNGCGRWDLLDVVRLTYALRPQGIQWPKKDDGSISFKLEHLSKANGLVHEAAHDALS 180 REWQN CGRWD+LDVVR YALRP+GIQWP D+G SF+LE L+KANGL HEAAHDALS Sbjct: 121 REWQNQCGRWDILDVVRTAYALRPEGIQWPVNDEGRPSFRLELLTKANGLSHEAAHDALS 180 Query: 181 DVRATIALARLIRQNNPRLFDFALALYKKDKAAAEIGLPVPRPFLHASGMFPVAHGCLAL 240 DVRATIALARLIRQ+ P+LFDF LAL+KKD+A AEIGLP PRPFLH SGMFP GCLA+ Sbjct: 181 DVRATIALARLIRQHQPKLFDFCLALHKKDRAGAEIGLPTPRPFLHISGMFPAEQGCLAV 240 Query: 241 MWPLGMHPTNKNEVIAWDLRHDPSELATLDAATVRERLFSKRDQLPEGVERLPVKSIHLN 300 MWPLG+HPTNKNE++AWDL DPSEL +LDA TVR RLFSK LPEGV RLP+KS+HLN Sbjct: 241 MWPLGVHPTNKNEILAWDLAFDPSELFSLDADTVRTRLFSKSADLPEGVTRLPLKSVHLN 300 Query: 301 KSPMVVGSLKTLSAE-------------RAADKAAALPDLTRLWSEVYQRESEGPADVDE 347 KSPMV+ L+TLSA+ R A+ AA PDL+ LW +V+QR E +DVDE Sbjct: 301 KSPMVINKLQTLSADMTTRWGIDIPLALRHAEIAAQAPDLSGLWRQVFQRPEEAASDVDE 360 Query: 348 DLYGGFIGNGDRRQLNQLRALSPQALATASVAFDDARLNEILFRYRARSFPETLSPEEAQ 407 DLYGGF+GN DRR+LN LRA+ PQ LA A V+FDD RL E+ FRYRAR+FP+TL+PEE + Sbjct: 361 DLYGGFVGNNDRRKLNDLRAMPPQKLAAARVSFDDQRLEELAFRYRARNFPDTLTPEEQE 420 Query: 408 HWEEHRAARLFEGAGGARTIAQLFEQIDQLQEEADDERTQDILGALYDYAEMIAPANQ 465 W+EHRAARLF+G G ART+ LFE+IDQL E A DER ++ILGALYDYAEMIAPA + Sbjct: 421 RWDEHRAARLFDGEGKARTVDMLFEEIDQLSETA-DERGEEILGALYDYAEMIAPARE 477 >ref|YP_001352252.1| exonuclease I [Janthinobacterium sp. Marseille] gb|ABR89104.1| exodeoxyribonuclease I [Janthinobacterium sp. Marseille] Length = 476 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/476 (71%), Positives = 385/476 (80%), Gaps = 14/476 (2%) Query: 1 MSNHTFLWHDYETFGAVPRRDRPAQFAAVRTDAELNEIGAPIMIYCKPAPDYLPDPVSCL 60 MS HTFLWHDYETFG PRRDRPAQFAA+RTDAELNEIG PIM+YCKPA D+LPDP SCL Sbjct: 1 MSTHTFLWHDYETFGIQPRRDRPAQFAAIRTDAELNEIGEPIMLYCKPANDFLPDPQSCL 60 Query: 61 ITGITPQHCLEHGLPEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA 120 ITGITPQ CLE G+PEHEFAA IE+AL + GTIGVGYNTIRFDDEVTRFMFWRNLIDPYA Sbjct: 61 ITGITPQTCLERGVPEHEFAAEIEKALSQTGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA 120 Query: 121 REWQNGCGRWDLLDVVRLTYALRPQGIQWPKKDDGSISFKLEHLSKANGLVHEAAHDALS 180 REWQN CGRWD+LDVVR YALRP+GI WPK DG SF+LE L+ NG+ HEAAHDALS Sbjct: 121 REWQNSCGRWDILDVVRTAYALRPEGINWPKHPDGRPSFRLEQLTAENGIAHEAAHDALS 180 Query: 181 DVRATIALARLIRQNNPRLFDFALALYKKDKAAAEIGLPVPRPFLHASGMFPVAHGCLAL 240 DVRATIALARLIR+ P+LFDF L L+KKDK AAEIGLP+ RPFLH +GM P GC+A+ Sbjct: 181 DVRATIALARLIRERQPKLFDFCLGLHKKDKVAAEIGLPLRRPFLHITGMIPAERGCIAV 240 Query: 241 MWPLGMHPTNKNEVIAWDLRHDPSELATLDAATVRERLFSKRDQLPEGVERLPVKSIHLN 300 +WPL +HPTNKNEVI WDL DPSELATLDA T+R R+FSK D LPEGV RLP+K+IHLN Sbjct: 241 VWPLAVHPTNKNEVIVWDLSVDPSELATLDAETIRMRMFSKADALPEGVSRLPIKTIHLN 300 Query: 301 KSPMVVGSLKTLSAE-------------RAADKAAALPDLTRLWSEVYQRESEGPADVDE 347 KSP+V+ +LKTLSAE R A+ AAA PD+T +W +V+ R E ADVDE Sbjct: 301 KSPIVINNLKTLSAEMTEQWGIDIPTALRHAEVAAAAPDMTAIWQDVFYRPQEAAADVDE 360 Query: 348 DLYGGFIGNGDRRQLNQLRALSPQALATASVAFDDARLNEILFRYRARSFPETLSPEEAQ 407 DLYGGF+GN DRR L +LRALSP+ALA A F D RL EI++RYRAR+FP TL+ EE Q Sbjct: 361 DLYGGFVGNNDRRTLQELRALSPEALAQAKPGFSDPRLEEIVWRYRARNFPHTLNEEEQQ 420 Query: 408 HWEEHRAARLFEGAGGARTIAQLFEQIDQLQEEADDERTQDILGALYDYAEMIAPA 463 WE+HR ARLF+G GGARTI LF +IDQL E A DER ++ILGALYDYAE IAP+ Sbjct: 421 RWEDHRVARLFDGEGGARTIETLFAEIDQLSETA-DERGEEILGALYDYAEAIAPS 475 >ref|ZP_04761448.1| Exodeoxyribonuclease I [Acidovorax delafieldii 2AN] gb|EER61746.1| Exodeoxyribonuclease I [Acidovorax delafieldii 2AN] Length = 481 Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/479 (70%), Positives = 388/479 (81%), Gaps = 17/479 (3%) Query: 1 MSNHTFLWHDYETFGAVPRRDRPAQFAAVRTDAELNEIGAPIMIYCKPAPDYLPDPVSCL 60 MS HTFLWHDYETFGA RRDRPAQFAA+RTDAEL E+G P+M+YC+PA DYLPDP SCL Sbjct: 1 MSPHTFLWHDYETFGANTRRDRPAQFAAIRTDAELREVGEPLMLYCQPANDYLPDPQSCL 60 Query: 61 ITGITPQHCLEHGLPEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA 120 ITGITPQ CLE G+PEHEFA RIE +PGTIGVGYNTIRFDDE+TRFMFWRNLIDPYA Sbjct: 61 ITGITPQLCLEKGVPEHEFANRIEAEFAQPGTIGVGYNTIRFDDEITRFMFWRNLIDPYA 120 Query: 121 REWQNGCGRWDLLDVVRLTYALRPQGIQWPKKDDGSISFKLEHLSKANGLVHEAAHDALS 180 REWQN CGRWDLLDVVR+TYALRP GI WP+K+DGS SFKLEHLSKANGL HEAAHDALS Sbjct: 121 REWQNQCGRWDLLDVVRMTYALRPDGIHWPRKEDGSPSFKLEHLSKANGLAHEAAHDALS 180 Query: 181 DVRATIALARLIRQNNPRLFDFALALYKKDKAAAEIGLP----VPRPFLHASGMFPVAHG 236 DVRATIALARLIRQ+NPRLFDFAL+L+KKD+ AAE+ LP RPFLH SGMFP G Sbjct: 181 DVRATIALARLIRQHNPRLFDFALSLHKKDRVAAELRLPATALTARPFLHVSGMFPAERG 240 Query: 237 CLALMWPLGMHPTNKNEVIAWDLRHDPSELATLDAATVRERLFSKRDQLPEGVERLPVKS 296 CLA+MWPL HPTNKNEVIAWDL HDP ELATL +R R+FS+ LPEG+ RLPVK+ Sbjct: 241 CLAVMWPLASHPTNKNEVIAWDLAHDPRELATLGTDEIRLRMFSRAADLPEGMTRLPVKT 300 Query: 297 IHLNKSPMVVGSLKTLS-------------AERAADKAAALPDLTRLWSEVYQRESEGPA 343 IHLNKSPMVVG++ TL+ A + A+ A +LPD++ +W V+ R +E A Sbjct: 301 IHLNKSPMVVGNVNTLTPALAQRWGIDLVQAAQHAEVARSLPDMSGIWPAVFARPAEPAA 360 Query: 344 DVDEDLYGGFIGNGDRRQLNQLRALSPQALATASVAFDDARLNEILFRYRARSFPETLSP 403 DVD+DLYGGF+GN DRR+LN LRA+ Q LA A FDD RL E+++RYRAR+FP TLSP Sbjct: 361 DVDQDLYGGFVGNSDRRRLNDLRAMDGQKLAAARTGFDDPRLEELVWRYRARNFPTTLSP 420 Query: 404 EEAQHWEEHRAARLFEGAGGARTIAQLFEQIDQLQEEADDERTQDILGALYDYAEMIAP 462 EE + WE HRAA LF+G GGART+ +LF +IDQ+ E ADDERTQ+ILGALYDYAE IAP Sbjct: 421 EEGERWEAHRAACLFDGQGGARTVDRLFTEIDQISETADDERTQEILGALYDYAEHIAP 479 >ref|YP_001098913.1| exonuclease I [Herminiimonas arsenicoxydans] emb|CAL60786.1| Exodeoxyribonuclease I (Exonuclease I) (DNA deoxyribophosphodiesterase) (dRPase) [Herminiimonas arsenicoxydans] Length = 477 Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/475 (70%), Positives = 383/475 (80%), Gaps = 14/475 (2%) Query: 1 MSNHTFLWHDYETFGAVPRRDRPAQFAAVRTDAELNEIGAPIMIYCKPAPDYLPDPVSCL 60 MS HTFLWHDYETFG RRDRPAQFAA+RTDAELNEIGAPIM+YC+PA D+LPDP SCL Sbjct: 1 MSTHTFLWHDYETFGINTRRDRPAQFAAIRTDAELNEIGAPIMLYCQPANDFLPDPQSCL 60 Query: 61 ITGITPQHCLEHGLPEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA 120 ITGITPQ CLE G+PE++FAA+IE L + GTIGVGYNTIRFDDEVTRFMFWRNLIDPYA Sbjct: 61 ITGITPQVCLERGIPEYQFAAKIESELAQTGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA 120 Query: 121 REWQNGCGRWDLLDVVRLTYALRPQGIQWPKKDDGSISFKLEHLSKANGLVHEAAHDALS 180 REWQN CGRWD+LDVVR YALRP+GI WP+ DG SF+LE L+ ANG+ HEAAHDALS Sbjct: 121 REWQNACGRWDILDVVRTAYALRPEGINWPQHPDGRSSFRLEQLTAANGIAHEAAHDALS 180 Query: 181 DVRATIALARLIRQNNPRLFDFALALYKKDKAAAEIGLPVPRPFLHASGMFPVAHGCLAL 240 DVRATIALARLIR PRLFDF AL+KKD+ A EIGLP+ RPFLH +GMFP GC+ + Sbjct: 181 DVRATIALARLIRDRQPRLFDFCFALHKKDRVATEIGLPLRRPFLHITGMFPAERGCIGI 240 Query: 241 MWPLGMHPTNKNEVIAWDLRHDPSELATLDAATVRERLFSKRDQLPEGVERLPVKSIHLN 300 +WPL +HPTNKNEVI WDL DPSELATLDA T+R R+FSK D LPEGV RLP+KSIHLN Sbjct: 241 VWPLAVHPTNKNEVIVWDLAADPSELATLDAETIRTRMFSKADALPEGVSRLPIKSIHLN 300 Query: 301 KSPMVVGSLKTLSAE-------------RAADKAAALPDLTRLWSEVYQRESEGPADVDE 347 KSP+V+ +LKTLSAE R A+ AA PD+T +W +V+ R EG DVDE Sbjct: 301 KSPVVINNLKTLSAEMTAQWGLDVATALRHAEIAATTPDMTAIWQDVFHRPQEGTPDVDE 360 Query: 348 DLYGGFIGNGDRRQLNQLRALSPQALATASVAFDDARLNEILFRYRARSFPETLSPEEAQ 407 DLYGGF+GN DRR L +LRALSP+ALA A+ F DARL E+ +RYRAR+FP+TLS EEA+ Sbjct: 361 DLYGGFVGNNDRRLLQELRALSPEALAKATPGFSDARLEELFWRYRARNFPQTLSAEEAE 420 Query: 408 HWEEHRAARLFEGAGGARTIAQLFEQIDQLQEEADDERTQDILGALYDYAEMIAP 462 WEEHRAARLF G GGARTI +F +IDQL E A DER ++IL ALYDYAE IAP Sbjct: 421 RWEEHRAARLFNGDGGARTIEGMFAEIDQLSETA-DERGEEILAALYDYAEAIAP 474 >ref|YP_002944544.1| exonuclease I [Variovorax paradoxus S110] gb|ACS19278.1| Exodeoxyribonuclease I [Variovorax paradoxus S110] Length = 479 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/477 (71%), Positives = 387/477 (81%), Gaps = 18/477 (3%) Query: 3 NHTFLWHDYETFGAVPRRDRPAQFAAVRTDAELNEIGAPIMIYCKPAPDYLPDPVSCLIT 62 NHTFLWHDYETFGAVPRRDRP+QFAA+RTDAELNEIG P+MIYCKPAPDYLP P +CLIT Sbjct: 2 NHTFLWHDYETFGAVPRRDRPSQFAAIRTDAELNEIGEPLMIYCKPAPDYLPSPEACLIT 61 Query: 63 GITPQHCLEHGLPEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYARE 122 GITPQ CLE G+PEH FAA+IE+A +PGTIGVGYNTIRFDDEVTRF+FWRNLIDPYARE Sbjct: 62 GITPQLCLERGIPEHAFAAQIEKAFSQPGTIGVGYNTIRFDDEVTRFLFWRNLIDPYARE 121 Query: 123 WQNGCGRWDLLDVVRLTYALRPQGIQWPKKDDGSISFKLEHLSKANGLVHEAAHDALSDV 182 WQN CGRWDLLDVVRLTYALRP GI+WPKK+DG SFKLE L++ANGL+HE+AHDALSDV Sbjct: 122 WQNDCGRWDLLDVVRLTYALRPDGIEWPKKEDGKPSFKLEDLARANGLLHESAHDALSDV 181 Query: 183 RATIALARLIRQNNPRLFDFALALYKKDKAAAEIGLP----VPRPFLHASGMFPVAHGCL 238 RATIALARLIR+ P+LF+FA L+KKD+ A+E+GLP RPFLH SGMFPV GCL Sbjct: 182 RATIALARLIRERQPKLFEFAFGLHKKDRVASELGLPAMRETARPFLHVSGMFPVERGCL 241 Query: 239 ALMWPLGMHPTNKNEVIAWDLRHDPSELATLDAATVRERLFSKRDQLPEGVERLPVKSIH 298 +MWPL HPTNKNE+IAWDL HDPSEL LD T+R RLF++ LPEGV RLPVK IH Sbjct: 242 GVMWPLASHPTNKNELIAWDLAHDPSELRDLDVETLRLRLFTRTADLPEGVVRLPVKGIH 301 Query: 299 LNKSPMVVGSLKTL-------------SAERAADKAAALPDLTRLWSEVYQRESEGPADV 345 LNKSPMVVG+L+TL +A R A A LPD++ +WS+VY R E DV Sbjct: 302 LNKSPMVVGNLRTLAPAMAERWNVDLDAALRHAAIARDLPDMSAIWSQVYARPKEAVPDV 361 Query: 346 DEDLYGGFIGNGDRRQLNQLRALSPQALATASVAFDDARLNEILFRYRARSFPETLSPEE 405 DEDLYGGF+GNGDRR+LNQLRALSP+ LA FDD RL EILFRYRAR++PE LS EE Sbjct: 362 DEDLYGGFVGNGDRRRLNQLRALSPEELAKDRTGFDDGRLEEILFRYRARNWPELLSSEE 421 Query: 406 AQHWEEHRAARLFEGAGGARTIAQLFEQIDQLQEEADDERTQDILGALYDYAEMIAP 462 A+ WE RAARLF+G GGARTI LF ++D L E A DER ++ILGALY+YAE IAP Sbjct: 422 AERWEALRAARLFKGEGGARTIEMLFSEVDALSETA-DERGEEILGALYEYAEAIAP 477 >ref|YP_549751.1| exonuclease I [Polaromonas sp. JS666] gb|ABE44853.1| Exodeoxyribonuclease I subunit C [Polaromonas sp. JS666] Length = 480 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/479 (70%), Positives = 383/479 (79%), Gaps = 18/479 (3%) Query: 1 MSNHTFLWHDYETFGAVPRRDRPAQFAAVRTDAELNEIGAPIMIYCKPAPDYLPDPVSCL 60 M+ HTFLWHDYETFG RRDRP+QFA +RTDAELNE+G P+M+YC+PA DYLPDP SCL Sbjct: 1 MAPHTFLWHDYETFGLNTRRDRPSQFAGIRTDAELNEVGEPLMLYCQPANDYLPDPASCL 60 Query: 61 ITGITPQHCLEHGLPEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA 120 ITGITPQ CLE G+PEH FAA+IEQ L EPGTIGVGYNTIRFDDEVTR++FWRNLIDPYA Sbjct: 61 ITGITPQLCLERGIPEHAFAAKIEQLLAEPGTIGVGYNTIRFDDEVTRYLFWRNLIDPYA 120 Query: 121 REWQNGCGRWDLLDVVRLTYALRPQGIQWPKKDDGSISFKLEHLSKANGLVHEAAHDALS 180 REWQN CGRWDLLDVVR+ YALRP+GI WP K+DG SFKLE L++ANGL+HEAAHDALS Sbjct: 121 REWQNDCGRWDLLDVVRMAYALRPEGIVWPTKEDGKPSFKLEDLARANGLLHEAAHDALS 180 Query: 181 DVRATIALARLIRQNNPRLFDFALALYKKDKAAAEIGLPVPR----PFLHASGMFPVAHG 236 DVRATIALARLIR+ P+LFDF L L+KKD+ AAE+GLP R PFLH SGMFP G Sbjct: 181 DVRATIALARLIRKAQPKLFDFCLGLHKKDRVAAELGLPASRQSATPFLHVSGMFPPERG 240 Query: 237 CLALMWPLGMHPTNKNEVIAWDLRHDPSELATLDAATVRERLFSKRDQLPEGVERLPVKS 296 CLA+MWPL HPTNKNE++AWDL HDPSEL LD AT+R+RLF++ LPEGV RLP+KS Sbjct: 241 CLAVMWPLATHPTNKNELLAWDLAHDPSELPLLDVATLRQRLFTRSADLPEGVLRLPLKS 300 Query: 297 IHLNKSPMVVGSLKTLSAE-------------RAADKAAALPDLTRLWSEVYQRESEGPA 343 +HLNKSPMVV L+TL+ E R A+KAA LPD++ +W EV+QR E Sbjct: 301 VHLNKSPMVVRKLQTLTPEMAVKWGVDMDAALRNAEKAAGLPDMSAIWPEVFQRPKEAAP 360 Query: 344 DVDEDLYGGFIGNGDRRQLNQLRALSPQALATASVAFDDARLNEILFRYRARSFPETLSP 403 DVDEDLYGGF+GN DRR+LNQLRALSP LA + FDD RL E+LFRYRAR+F ETL+P Sbjct: 361 DVDEDLYGGFVGNADRRRLNQLRALSPAELAHSRTGFDDDRLQELLFRYRARNFAETLTP 420 Query: 404 EEAQHWEEHRAARLFEGAGGARTIAQLFEQIDQLQEEADDERTQDILGALYDYAEMIAP 462 EEA+ WE HRAARL EG GGAR + LF +ID L E DER Q ILGALYDYAE IAP Sbjct: 421 EEAERWEAHRAARLLEGEGGARNVDALFAEIDTLSETT-DERGQAILGALYDYAEAIAP 478 >ref|YP_004155558.1| exodeoxyribonuclease i [Variovorax paradoxus EPS] gb|ADU37447.1| Exodeoxyribonuclease I [Variovorax paradoxus EPS] Length = 479 Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/477 (70%), Positives = 384/477 (80%), Gaps = 18/477 (3%) Query: 3 NHTFLWHDYETFGAVPRRDRPAQFAAVRTDAELNEIGAPIMIYCKPAPDYLPDPVSCLIT 62 NHTFLWHDYETFGAVPRRDRP+QFAA+RTDAELNEIG P+MIYCKPAPDYLP P +CLIT Sbjct: 2 NHTFLWHDYETFGAVPRRDRPSQFAAIRTDAELNEIGEPLMIYCKPAPDYLPSPEACLIT 61 Query: 63 GITPQHCLEHGLPEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYARE 122 GITPQ CLE G+PEH+FAA+IE+A +PGTIGVGYNTIRFDDEVTRF+FWRNLIDPYARE Sbjct: 62 GITPQVCLERGIPEHDFAAQIERAFSQPGTIGVGYNTIRFDDEVTRFLFWRNLIDPYARE 121 Query: 123 WQNGCGRWDLLDVVRLTYALRPQGIQWPKKDDGSISFKLEHLSKANGLVHEAAHDALSDV 182 WQN CGRWDLLDVVRLTYALRP+GIQWPKK+DG SFKLE L++ANGL+HE+AHDALSDV Sbjct: 122 WQNDCGRWDLLDVVRLTYALRPEGIQWPKKEDGKPSFKLEDLARANGLLHESAHDALSDV 181 Query: 183 RATIALARLIRQNNPRLFDFALALYKKDKAAAEIGLPVPR----PFLHASGMFPVAHGCL 238 RATIALARLIR P+LFDFA L+KKD+ A+E+GLP R PFLH SGMF V GC+ Sbjct: 182 RATIALARLIRDKQPKLFDFAFGLHKKDRVASELGLPAMRETAKPFLHVSGMFSVERGCI 241 Query: 239 ALMWPLGMHPTNKNEVIAWDLRHDPSELATLDAATVRERLFSKRDQLPEGVERLPVKSIH 298 A+MWPL HPTNKNE++AWDL HDPSEL LD T+R RLF++ LPEGV RLPVK IH Sbjct: 242 AVMWPLASHPTNKNELLAWDLAHDPSELRDLDVETLRLRLFTRTADLPEGVLRLPVKGIH 301 Query: 299 LNKSPMVVGSLKTL-------------SAERAADKAAALPDLTRLWSEVYQRESEGPADV 345 LNKSPMVVG+L+TL +A R A A LPD++ +WS+VY R E DV Sbjct: 302 LNKSPMVVGNLRTLAPPMAERWGIDLDTAMRHAAIARDLPDMSAIWSQVYARPKEATPDV 361 Query: 346 DEDLYGGFIGNGDRRQLNQLRALSPQALATASVAFDDARLNEILFRYRARSFPETLSPEE 405 DEDLYGGF+GN DRR+LNQLR LS LA FDD RL EI+FRYRAR++PE+L+PEE Sbjct: 362 DEDLYGGFVGNADRRRLNQLRGLSAGELAKDRTGFDDGRLEEIVFRYRARNWPESLAPEE 421 Query: 406 AQHWEEHRAARLFEGAGGARTIAQLFEQIDQLQEEADDERTQDILGALYDYAEMIAP 462 + WE R ARLF G GGARTI QLF ++D L E A DER ++ILGALY+YAE IAP Sbjct: 422 TERWEALRVARLFHGEGGARTIEQLFSEVDALSETA-DERGEEILGALYEYAEAIAP 477 >ref|ZP_08274615.1| Exodeoxyribonuclease I [Oxalobacteraceae bacterium IMCC9480] gb|EGF31914.1| Exodeoxyribonuclease I [Oxalobacteraceae bacterium IMCC9480] Length = 477 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/478 (68%), Positives = 380/478 (79%), Gaps = 14/478 (2%) Query: 1 MSNHTFLWHDYETFGAVPRRDRPAQFAAVRTDAELNEIGAPIMIYCKPAPDYLPDPVSCL 60 MS+HTFLWHDYETFG R DRPAQFAA+RTDAELNEIG IM+YC+PA DYLPDP SCL Sbjct: 1 MSSHTFLWHDYETFGVNTRSDRPAQFAAIRTDAELNEIGDEIMLYCQPANDYLPDPQSCL 60 Query: 61 ITGITPQHCLEHGLPEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA 120 ITGITPQ CL+ GLPE++FAA IE A GT+GVGYNTIRFDDE+TRF+FWRNLIDPYA Sbjct: 61 ITGITPQVCLQRGLPEYQFAAAIEAAFSASGTVGVGYNTIRFDDEITRFLFWRNLIDPYA 120 Query: 121 REWQNGCGRWDLLDVVRLTYALRPQGIQWPKKDDGSISFKLEHLSKANGLVHEAAHDALS 180 REWQN CGRWDL+DVVR+TYALRP+GI WP D+G SF+LE L+KANG+ H AAHDALS Sbjct: 121 REWQNQCGRWDLMDVVRMTYALRPEGIHWPMNDEGKPSFRLELLTKANGIAHAAAHDALS 180 Query: 181 DVRATIALARLIRQNNPRLFDFALALYKKDKAAAEIGLPVPRPFLHASGMFPVAHGCLAL 240 DVRATIALARLIR P+LFDF AL+KKD+ +AEIGLP +PFLH SGMFP GCL + Sbjct: 181 DVRATIALARLIRTQQPKLFDFCFALHKKDRVSAEIGLPARKPFLHVSGMFPAERGCLGV 240 Query: 241 MWPLGMHPTNKNEVIAWDLRHDPSELATLDAATVRERLFSKRDQLPEGVERLPVKSIHLN 300 MWPL +PTNKNEVIAWDL HDPSELATLDA T+R R+F++ LPEGV RLP+K+IHLN Sbjct: 241 MWPLATYPTNKNEVIAWDLSHDPSELATLDADTIRLRMFTRSADLPEGVTRLPIKTIHLN 300 Query: 301 KSPMVVGSLKTLS-------------AERAADKAAALPDLTRLWSEVYQRESEGPADVDE 347 KSPMVVG+LKTLS A R A AA L D+ LW +V+QR ++ DVDE Sbjct: 301 KSPMVVGNLKTLSPAMAEKWQIDLEQAHRHATIAATLVDMDALWQQVFQRPAQATPDVDE 360 Query: 348 DLYGGFIGNGDRRQLNQLRALSPQALATASVAFDDARLNEILFRYRARSFPETLSPEEAQ 407 DLY GF+GNGDRR+L +LRALSP ALA FDD RL E+LFRYRAR+FP+TL EA+ Sbjct: 361 DLYNGFVGNGDRRKLTELRALSPTALAKTHPGFDDVRLEELLFRYRARNFPDTLDAAEAE 420 Query: 408 HWEEHRAARLFEGAGGARTIAQLFEQIDQLQEEADDERTQDILGALYDYAEMIAPANQ 465 WE+HR+ RLFEG+ GART+ LF +IDQL E+A D R ++ILGALYDY EMIAPA Q Sbjct: 421 RWEQHRSDRLFEGSAGARTVDILFGEIDQLSEQA-DTRGEEILGALYDYVEMIAPAPQ 477 >ref|YP_982166.1| exonuclease I [Polaromonas naphthalenivorans CJ2] gb|ABM37245.1| Exodeoxyribonuclease I subunit C [Polaromonas naphthalenivorans CJ2] Length = 482 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/479 (67%), Positives = 378/479 (78%), Gaps = 18/479 (3%) Query: 1 MSNHTFLWHDYETFGAVPRRDRPAQFAAVRTDAELNEIGAPIMIYCKPAPDYLPDPVSCL 60 M +HTFLWHDYETFG RRDRPAQFA +RTDAELNEIG P+MIYC+PA DYLPDP SC+ Sbjct: 1 MDSHTFLWHDYETFGLNTRRDRPAQFAGIRTDAELNEIGEPLMIYCQPANDYLPDPESCV 60 Query: 61 ITGITPQHCLEHGLPEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA 120 +TGITPQHCL+HG+PEH FAARIEQ L +PGTIGVGYNTIRFDDEVTR +FWRNLIDPY Sbjct: 61 LTGITPQHCLQHGVPEHAFAARIEQVLAQPGTIGVGYNTIRFDDEVTRHLFWRNLIDPYG 120 Query: 121 REWQNGCGRWDLLDVVRLTYALRPQGIQWPKKDDGSISFKLEHLSKANGLVHEAAHDALS 180 REWQN CGRWDLLDVVR+ YALRP GI WP K+DG SFKLE L++ANGL+HE AHDALS Sbjct: 121 REWQNECGRWDLLDVVRMAYALRPDGIVWPLKEDGKPSFKLEDLARANGLLHETAHDALS 180 Query: 181 DVRATIALARLIRQNNPRLFDFALALYKKDKAAAEIGLP----VPRPFLHASGMFPVAHG 236 DVRATIALARL+R PRLFDF L L+KK + +AE+GLP + RPFLH SGMFP G Sbjct: 181 DVRATIALARLVRTAQPRLFDFCLGLHKKARVSAELGLPATARMARPFLHVSGMFPAERG 240 Query: 237 CLALMWPLGMHPTNKNEVIAWDLRHDPSELATLDAATVRERLFSKRDQLPEGVERLPVKS 296 CLA+M+PL HP NKNEV+AWDL HDPSEL LD AT+R RLFSK LPEGV+RLP+KS Sbjct: 241 CLAVMFPLATHPANKNEVLAWDLAHDPSELPLLDVATLRLRLFSKSADLPEGVQRLPIKS 300 Query: 297 IHLNKSPMVVGSLKTLS-------------AERAADKAAALPDLTRLWSEVYQRESEGPA 343 +HLNKSPMVV +L+TL+ A R A+ AA LPD++ +W EV++R +E Sbjct: 301 VHLNKSPMVVRNLQTLTPAMAARWGVDTEQALRHAEIAAGLPDMSAVWPEVFRRAAEAEP 360 Query: 344 DVDEDLYGGFIGNGDRRQLNQLRALSPQALATASVAFDDARLNEILFRYRARSFPETLSP 403 DVDE+LYGGFIGN DRR+LNQLR +S LA + + FDD RL E++FRYRAR+FPETL+P Sbjct: 361 DVDENLYGGFIGNDDRRRLNQLREMSGAELAHSRMGFDDGRLKELVFRYRARNFPETLNP 420 Query: 404 EEAQHWEEHRAARLFEGAGGARTIAQLFEQIDQLQEEADDERTQDILGALYDYAEMIAP 462 E+ + WE HRAARL +G GGAR + LF ID L + A DER + ILGALYDYAE I P Sbjct: 421 EDTERWEAHRAARLLDGEGGARNVDALFAGIDALAQTA-DERGEAILGALYDYAEAIVP 478