BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0023.p (701 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776996.1| diguanylate cyclase/phosphodiesterase with P... 1438 0.0 ref|YP_001353997.1| sensory box/GGDEF family protein [Janthinoba... 904 0.0 ref|YP_001099398.1| putative sensory protein [Herminiimonas arse... 879 0.0 ref|YP_003051471.1| PAS/PAC sensor-containing diguanylate cyclas... 759 0.0 ref|YP_004040089.1| PAS/PAC sensor-containing diguanylate cyclas... 753 0.0 ref|YP_003522697.1| diguanylate cyclase/phosphodiesterase with P... 734 0.0 ref|YP_003674552.1| PAS/PAC sensor-containing diguanylate cyclas... 730 0.0 ref|YP_003048286.1| PAS/PAC sensor-containing diguanylate cyclas... 719 0.0 ref|ZP_08406410.1| sensory box/GGDEF family protein [Hylemonella... 660 0.0 ref|YP_004714071.1| sensory box/GGDEF family protein [Pseudomona... 645 0.0 >ref|YP_003776996.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domains protein [Herbaspirillum seropedicae SmR1] gb|ADJ65088.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domains protein [Herbaspirillum seropedicae SmR1] Length = 701 Score = 1438 bits (3723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 700/701 (99%), Positives = 701/701 (100%) Query: 1 VAIPRSPRLLETLLVNLDGVVYRCRDDAQWTMEFVSEGCLALTGYLPEDLLLNQRLSFLE 60 +AIPRSPRLLETLLVNLDGVVYRCRDDAQWTMEFVSEGCLALTGYLPEDLLLNQRLSFLE Sbjct: 1 MAIPRSPRLLETLLVNLDGVVYRCRDDAQWTMEFVSEGCLALTGYLPEDLLLNQRLSFLE 60 Query: 61 LTHPEDRTLVRNHVDACMRERRRIDIEYRIVRADGAVRWVWERGVGIYNANGQVEAIEGF 120 LTHPEDRTLVRNHVDACMRERRRIDIEYRIVRADGAVRWVWERGVGIYNANGQVEAIEGF Sbjct: 61 LTHPEDRTLVRNHVDACMRERRRIDIEYRIVRADGAVRWVWERGVGIYNANGQVEAIEGF 120 Query: 121 LQDVTERKEAAQALQEAERRYRSIFENAIEGVFQTTPDGTYIAVNPALARIYGYHSPEDL 180 LQDVTERKEAAQALQEAERRYRSIFENAIEGVFQTTPDGTYIAVNPALARIYGYHSPEDL Sbjct: 121 LQDVTERKEAAQALQEAERRYRSIFENAIEGVFQTTPDGTYIAVNPALARIYGYHSPEDL 180 Query: 181 IVGLRDISHQLYVEPERRQEFMRLMEEQGSVSNFESRVYRRDGEIIWISENARAVYDEAG 240 IVGLRDISHQLYVEPERRQEFMRLMEEQGSVSNFESRVYRRDGEIIWISENARAVYDEAG Sbjct: 181 IVGLRDISHQLYVEPERRQEFMRLMEEQGSVSNFESRVYRRDGEIIWISENARAVYDEAG 240 Query: 241 KLSCYEGTVEAITERKAHEAEMRHQATHDALTGLPNRNMLHEHLQRALRVARQKGALTAV 300 KLSCYEGTVEAITERKAHEAEMRHQATHDALTGLPNRNMLHEHLQRALRVARQKGALTAV Sbjct: 241 KLSCYEGTVEAITERKAHEAEMRHQATHDALTGLPNRNMLHEHLQRALRVARQKGALTAV 300 Query: 301 AFVDLDQFKFINDSLGHQVGDELLKTVAQRLQACLREADMVARQGGDEFVLVLQNQTEGE 360 AFVDLDQFKFINDSLGHQVGDELLKTVAQRLQACLREADMVARQGGDEFVLVLQNQTEGE Sbjct: 301 AFVDLDQFKFINDSLGHQVGDELLKTVAQRLQACLREADMVARQGGDEFVLVLQNQTEGE 360 Query: 361 AGIAEVMQRILAAVARPWQAGDREFQVTASIGVSRYPADGKDVESLLKHADSAMYRAKEQ 420 AGIAEVMQRILAAVARPWQAGDREFQVTASIGVSRYPADGKDVESLLKHADSAMYRAKEQ Sbjct: 361 AGIAEVMQRILAAVARPWQAGDREFQVTASIGVSRYPADGKDVESLLKHADSAMYRAKEQ 420 Query: 421 GRNNFQFFAPWMDSQVSNRLEMLINLRRALDQDEFKLYYQPKLSLQDGRLIGAEALIRWE 480 GRNNFQFFAPWMDSQVSNRLEMLINLRRALDQDEFKLYYQPKLSLQDGRLIGAEALIRWE Sbjct: 421 GRNNFQFFAPWMDSQVSNRLEMLINLRRALDQDEFKLYYQPKLSLQDGRLIGAEALIRWE 480 Query: 481 SPQQGMVPPDRFIPFAEEAGLIVPIGEWVLRTACRQNQAWQQAGLPPIPVAVNLSPRQLN 540 SPQQGMVPPDRFIPFAEEAGLIVPIGEWVLRTACRQNQAWQQAGLPPIPVAVNLSPRQLN Sbjct: 481 SPQQGMVPPDRFIPFAEEAGLIVPIGEWVLRTACRQNQAWQQAGLPPIPVAVNLSPRQLN 540 Query: 541 QSLPDFVAGVLAQSGLAASWLELEITENVVMKDAEKSVATLHALKRLGLQISVDDFGTGY 600 QSLPDFVAGVLAQSGLAASWLELEITENVVMKDAEKSVATLHALKRLGLQISVDDFGTGY Sbjct: 541 QSLPDFVAGVLAQSGLAASWLELEITENVVMKDAEKSVATLHALKRLGLQISVDDFGTGY 600 Query: 601 SSLSYLRRFPVDALKIDKSFVRDIVRDADSAAIVKAIISLAHILNLRVIAEGVEDEEQHA 660 SSLSYLRRFPVDALKIDKSFVRDIVRDADSAAIVKAIISLAHILNLRVIAEGVEDEEQHA Sbjct: 601 SSLSYLRRFPVDALKIDKSFVRDIVRDADSAAIVKAIISLAHILNLRVIAEGVEDEEQHA 660 Query: 661 FLKENACDEVQGYYFGKPMEVAVFTAWMSEQAQAGQVLSCK 701 FLKENACDEVQGYYFGKPMEVAVFTAWMSEQAQAGQVLSCK Sbjct: 661 FLKENACDEVQGYYFGKPMEVAVFTAWMSEQAQAGQVLSCK 701 >ref|YP_001353997.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] gb|ABR89327.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 699 Score = 904 bits (2336), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/698 (62%), Positives = 545/698 (78%), Gaps = 9/698 (1%) Query: 1 VAIPRSP-------RLLETLLVNLDGVVYRCRDDAQWTMEFVSEGCLALTGYLPEDLLLN 53 +++P P RLL TLL NL+G+VYRCR DA WTMEFVSEGC ALTGY EDLL N Sbjct: 3 LSMPSHPADPTLQARLLSTLLANLEGMVYRCRLDAHWTMEFVSEGCFALTGYTEEDLLFN 62 Query: 54 QRLSFLELTHPEDRTLVRNHVDACMRERRRIDIEYRIVRADGAVRWVWERGVGIYNANGQ 113 R+S+ ++THP+DR VR+ + +R RR DIEYRIVRADG++R VWERG I + N Sbjct: 63 SRVSYDQITHPDDRRHVRDTILEAVRNNRRFDIEYRIVRADGSIRHVWERGTNISHDNKA 122 Query: 114 VEAIEGFLQDVTERKEAAQALQEAERRYRSIFENAIEGVFQTTPDGTYIAVNPALARIYG 173 + +EGF+QDVTERK+A +AL+EAERRYRSIFENAIEG++Q+TP Y+AVNPALAR+YG Sbjct: 123 WDILEGFIQDVTERKQADEALREAERRYRSIFENAIEGIYQSTPSDGYLAVNPALARMYG 182 Query: 174 YHSPEDLIVGLRDISHQLYVEPERRQEFMRLMEEQGSVSNFESRVYRRDGEIIWISENAR 233 Y SP+ LI LRDI +Q+YV+P+RR EF RLM + G V+NFESRV+RR+GE+IWISENAR Sbjct: 183 YDSPQALISTLRDIDNQVYVDPQRRLEFKRLMAKHGVVTNFESRVHRRNGEVIWISENAR 242 Query: 234 AVYDEAGKLSCYEGTVEAITERKAHEAEMRHQATHDALTGLPNRNMLHEHLQRALRVARQ 293 +VY+ G L +EGTVEAITERK HEAE++ QATHDALTGLPNR +L++ +Q+A+ + + Sbjct: 243 SVYNSDGTLLFFEGTVEAITERKLHEAEIQFQATHDALTGLPNRTLLYDRMQQAVLHSER 302 Query: 294 KGALTAVAFVDLDQFKFINDSLGHQVGDELLKTVAQRLQACLREADMVARQGGDEFVLVL 353 G LTA+AF+DLDQFKFINDSLGHQVGDELLK AQRL +CLRE+D VARQGGDEFVL+L Sbjct: 303 YGKLTAIAFLDLDQFKFINDSLGHQVGDELLKITAQRLTSCLRESDTVARQGGDEFVLLL 362 Query: 354 QNQTEGEAGIAEVMQRILAAVARPWQAGDREFQVTASIGVSRYPADGKDVESLLKHADSA 413 +Q EA I MQR+L V++PW+A D EFQ+T SIG++ P DG+D E+LLK+ADSA Sbjct: 363 TDQPNEEA-ITHTMQRVLHEVSQPWKANDLEFQITCSIGLTLCPDDGRDAETLLKNADSA 421 Query: 414 MYRAKEQGRNNFQFFAPWMDSQVSNRLEMLINLRRALDQDEFKLYYQPKLSLQDGRLIGA 473 MY+AKE GRNNFQ+F+ M+S V++RLE+L LR+A+ ++F L+YQPK+SL ++IGA Sbjct: 422 MYKAKELGRNNFQYFSAEMNSSVTDRLELLNRLRQAITNEDFVLHYQPKVSLASHQIIGA 481 Query: 474 EALIRWESPQQGMVPPDRFIPFAEEAGLIVPIGEWVLRTACRQNQAWQQAGLPPIPVAVN 533 EAL+RW S GMV P FIP AEE GLI+P+GEWVLRTACRQN+AWQ AG PPIP++VN Sbjct: 482 EALVRWNSAHSGMVSPASFIPLAEETGLIIPLGEWVLRTACRQNRAWQDAGYPPIPISVN 541 Query: 534 LSPRQLNQS-LPDFVAGVLAQSGLAASWLELEITENVVMKDAEKSVATLHALKRLGLQIS 592 LSPRQL + + + V +L ++GL A LELEITE+V+ D EKS A L L+ LG++IS Sbjct: 542 LSPRQLARGDIVEVVERILTETGLEAQHLELEITESVMTTDVEKSFALLTQLRSLGVKIS 601 Query: 593 VDDFGTGYSSLSYLRRFPVDALKIDKSFVRDIVRDADSAAIVKAIISLAHILNLRVIAEG 652 +DDFGTGYSSLSYL+RFPVD LKID+SFVRDI D DSAAIVKAIISL LNL V+AEG Sbjct: 602 LDDFGTGYSSLSYLKRFPVDTLKIDQSFVRDIATDQDSAAIVKAIISLGRNLNLTVLAEG 661 Query: 653 VEDEEQHAFLKENACDEVQGYYFGKPMEVAVFTAWMSE 690 +E E+Q FL N CDE QGY KP+ F +++ Sbjct: 662 IETEDQFQFLLANGCDEGQGYLMSKPVPNKNFVDLLTQ 699 >ref|YP_001099398.1| putative sensory protein [Herminiimonas arsenicoxydans] emb|CAL61271.1| conserved hypothetical protein; putative PAS/PAC, EAL, GGDEF domains [Herminiimonas arsenicoxydans] Length = 710 Score = 879 bits (2271), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/673 (63%), Positives = 528/673 (78%), Gaps = 3/673 (0%) Query: 8 RLLETLLVNLDGVVYRCRDDAQWTMEFVSEGCLALTGYLPEDLLLNQRLSFLELTHPEDR 67 RLL TLL NL+G+VYRCR D QWTMEFVSEGCLALTGY ED+L N R+S+ ++THP+DR Sbjct: 29 RLLGTLLANLEGMVYRCRLDQQWTMEFVSEGCLALTGYTEEDILFNSRVSYDDITHPDDR 88 Query: 68 TLVRNHVDACMRERRRIDIEYRIVRADGAVRWVWERGVGIYNANGQVEAIEGFLQDVTER 127 VR V + RR D+EYRIVRADG VRWVWERG + N + +EGF+QD+TER Sbjct: 89 EYVRTAVMQAVTGNRRFDVEYRIVRADGEVRWVWERGTNAMHDNKKWGVLEGFIQDITER 148 Query: 128 KEAAQALQEAERRYRSIFENAIEGVFQTTPDGTYIAVNPALARIYGYHSPEDLIVGLRDI 187 K+A +AL+EAERRYRSIFENAIEG++Q+TP Y+AVNPALAR+YGY +P+DLI LRDI Sbjct: 149 KQADEALREAERRYRSIFENAIEGIYQSTPSNGYLAVNPALARMYGYDTPQDLISMLRDI 208 Query: 188 SHQLYVEPERRQEFMRLMEEQGSVSNFESRVYRRDGEIIWISENARAVYDEAGKLSCYEG 247 HQLYV+P+RR EFMR M E G V+NFESR+Y+ +G+IIWISENARAV+ G+L +EG Sbjct: 209 EHQLYVDPQRRIEFMRQMAENGIVTNFESRIYKSNGDIIWISENARAVHTSTGELLFFEG 268 Query: 248 TVEAITERKAHEAEMRHQATHDALTGLPNRNMLHEHLQRALRVARQKGALTAVAFVDLDQ 307 TVEAITERK HEAE++ QATHDALTGLPNR +L++ +Q+A+ + + G LTA+AF+DLDQ Sbjct: 269 TVEAITERKLHEAEIQFQATHDALTGLPNRTLLYDRMQQAVLHSARYGNLTAIAFLDLDQ 328 Query: 308 FKFINDSLGHQVGDELLKTVAQRLQACLREADMVARQGGDEFVLVLQNQTEGEAGIAEVM 367 FKFINDSLGHQVGDELLK AQRL +CLRE+D VARQGGDEFVL+L +Q E I M Sbjct: 329 FKFINDSLGHQVGDELLKITAQRLTSCLRESDTVARQGGDEFVLLLTSQP-SEESITHTM 387 Query: 368 QRILAAVARPWQAGDREFQVTASIGVSRYPADGKDVESLLKHADSAMYRAKEQGRNNFQF 427 QR+L VA+PW A EF++T S+GV+ P DG+D E+LLK+ADSAMY+AKE GRNNFQ+ Sbjct: 388 QRVLHEVAQPWMANGLEFRITCSVGVTLCPDDGRDAETLLKNADSAMYKAKELGRNNFQY 447 Query: 428 FAPWMDSQVSNRLEMLINLRRALDQDEFKLYYQPKLSLQDGRLIGAEALIRWESPQQGMV 487 FA M+ ++RL +L LR+A+ EF L+YQPK++L +G +IGAEALIRW S +GMV Sbjct: 448 FATEMNDTATDRLALLNRLRQAIPNHEFVLHYQPKINLANGDIIGAEALIRWNSA-EGMV 506 Query: 488 PPDRFIPFAEEAGLIVPIGEWVLRTACRQNQAWQQAGLPPIPVAVNLSPRQLNQS-LPDF 546 P FIP AEE GLI+PIG WVL TACRQN+AWQ AG PI ++VNLS RQL + + + Sbjct: 507 SPGSFIPLAEETGLIIPIGVWVLETACRQNRAWQLAGYAPITISVNLSSRQLARGDIVEQ 566 Query: 547 VAGVLAQSGLAASWLELEITENVVMKDAEKSVATLHALKRLGLQISVDDFGTGYSSLSYL 606 V VLA++GL A +LELEITE+V+ D EKS A L L+ LG++IS+DDFGTGYSSLSYL Sbjct: 567 VEQVLAETGLEAQYLELEITESVMASDVEKSFALLTRLRLLGVKISLDDFGTGYSSLSYL 626 Query: 607 RRFPVDALKIDKSFVRDIVRDADSAAIVKAIISLAHILNLRVIAEGVEDEEQHAFLKENA 666 +RFPVD LKID+SFVRD+ DSAAIVKAIISL H LNL V+AEG+E EEQ FL ++A Sbjct: 627 KRFPVDTLKIDQSFVRDLATSQDSAAIVKAIISLGHNLNLTVLAEGIETEEQFQFLLKSA 686 Query: 667 CDEVQGYYFGKPM 679 C+E QGY +P+ Sbjct: 687 CNEGQGYLMSRPV 699 >ref|YP_003051471.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus glucosetrophus SIP3-4] gb|ACT50944.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus glucosetrophus SIP3-4] Length = 718 Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/672 (54%), Positives = 491/672 (73%), Gaps = 2/672 (0%) Query: 9 LLETLLVNLDGVVYRCRDDAQWTMEFVSEGCLALTGYLPEDLLLNQRLSFLELTHPEDRT 68 +L++LL N++G+ Y C DA WTM F+S+GC LTGY P++LL N SF ELT PEDR Sbjct: 32 ILDSLLKNMEGMAYCCLVDAHWTMLFISDGCFDLTGYRPDELLHNGCTSFEELTLPEDRA 91 Query: 69 LVRNHVDACMRERRRIDIEYRIVRADGAVRWVWERGVGIYNANGQVEAIEGFLQDVTERK 128 +RN VD + R R +IEYRI+ DG +RWV ERG GI+N GQVEA+EGF+QD+T+RK Sbjct: 92 RIRNTVDDALSRRERFEIEYRIMTIDGQIRWVNERGTGIFNPQGQVEALEGFIQDITQRK 151 Query: 129 EAAQALQEAERRYRSIFENAIEGVFQTTPDGTYIAVNPALARIYGYHSPEDLIVGLRDIS 188 QALQEAERRYR+IFEN+IEG+FQT+ DG YI NPALARIYGY SPE+LI L +I+ Sbjct: 152 LNEQALQEAERRYRNIFENSIEGIFQTSQDGQYINANPALARIYGYESPEELIQSLNNIA 211 Query: 189 HQLYVEPERRQEFMRLMEEQGSVSNFESRVYRRDGEIIWISENARAVYDEAGKLSCYEGT 248 QLYV+PE RQ F+ LM+ + V NFES++YRRDG IWISENARAV ++AGKL +EGT Sbjct: 212 QQLYVQPESRQAFLTLMQLEDRVVNFESQIYRRDGSTIWISENARAVRNDAGKLLYFEGT 271 Query: 249 VEAITERKAHEAEMRHQATHDALTGLPNRNMLHEHLQRALRVARQKGALTAVAFVDLDQF 308 VE ITERK++ A + +QATHD LTGLPNR ++ + L +A+ A + + AV FVDLD+F Sbjct: 272 VEDITERKSYNALIEYQATHDDLTGLPNRTLMQDRLLQAISYADRTASKLAVVFVDLDKF 331 Query: 309 KFINDSLGHQVGDELLKTVAQRLQACLREADMVARQGGDEFVLVLQNQTEGEAGIAEVMQ 368 K INDS+GH +GD+LL +A+RL++C+R++D VAR GGDEFVL+L N G +++ +Q Sbjct: 332 KDINDSMGHFIGDQLLIAMARRLESCIRDSDTVARPGGDEFVLLLSN-IHGMDALSQTLQ 390 Query: 369 RILAAVARPWQAGDREFQVTASIGVSRYPADGKDVESLLKHADSAMYRAKEQGRNNFQFF 428 R+LA + P ++F VT+SIG+S YP DGK E+LLK+AD+AMY+AK++G+NNFQF+ Sbjct: 391 RVLALTSEPCSIEGKDFTVTSSIGISLYPDDGKTSETLLKNADTAMYKAKQEGKNNFQFY 450 Query: 429 APWMDSQVSNRLEMLINLRRALDQDEFKLYYQPKLSLQDGRLIGAEALIRWESPQQGMVP 488 ++S + RLEM +R AL +EF L+YQPKL+L+ R+ G EALIRW +P+QG++ Sbjct: 451 TRELNSILVERLEMEYQMRNALGHNEFHLHYQPKLNLRTQRITGVEALIRWHNPRQGLIS 510 Query: 489 PDRFIPFAEEAGLIVPIGEWVLRTACRQNQAWQQAGLPPIPVAVNLSPRQLNQS-LPDFV 547 P+RFIP AEE+ LI IG WVL AC ++ A Q +PV+VN+SPRQ QS L + Sbjct: 511 PNRFIPIAEESSLIEQIGSWVLEKACMESIALSQLSGYDVPVSVNVSPRQFQQSNLVGNI 570 Query: 548 AGVLAQSGLAASWLELEITENVVMKDAEKSVATLHALKRLGLQISVDDFGTGYSSLSYLR 607 + VL ++GL S LELEITE + + + + L+ LK LG+++++DDFGTGYSSL YL+ Sbjct: 571 SRVLQETGLKPSLLELEITEGTLADTSPQFIKVLNDLKGLGIKLAIDDFGTGYSSLGYLK 630 Query: 608 RFPVDALKIDKSFVRDIVRDADSAAIVKAIISLAHILNLRVIAEGVEDEEQHAFLKENAC 667 FP+D LKID+SFV + D + AI+KAI++L H L + ++AEGVE E Q FL C Sbjct: 631 HFPIDNLKIDRSFVMGLESDTANQAILKAIVALGHNLGINLVAEGVETERQRDFLLSIGC 690 Query: 668 DEVQGYYFGKPM 679 DE+QG+ F +P+ Sbjct: 691 DEMQGFLFSQPL 702 >ref|YP_004040089.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688] gb|ADQ84853.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylovorus sp. MP688] Length = 679 Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/664 (54%), Positives = 484/664 (72%), Gaps = 2/664 (0%) Query: 17 LDGVVYRCRDDAQWTMEFVSEGCLALTGYLPEDLLLNQRLSFLELTHPEDRTLVRNHVDA 76 ++G+ Y C DA WTM F+S+GC LTGY P++LL N R SF ELT PEDR +RN VD Sbjct: 1 MEGMAYCCLVDAHWTMLFISDGCFDLTGYRPDELLHNGRTSFEELTLPEDRARIRNTVDD 60 Query: 77 CMRERRRIDIEYRIVRADGAVRWVWERGVGIYNANGQVEAIEGFLQDVTERKEAAQALQE 136 + R R +IEYRI+ DG +RWV ERG GI+N GQVEA+EGF+QD+T+RK QALQE Sbjct: 61 ALSRRERFEIEYRIMTIDGQIRWVNERGTGIFNPQGQVEALEGFIQDITQRKLNEQALQE 120 Query: 137 AERRYRSIFENAIEGVFQTTPDGTYIAVNPALARIYGYHSPEDLIVGLRDISHQLYVEPE 196 AERRYR+IFEN+IEG+FQT+ DG YI NPALARIYGY SPE+LI L +I+ QLYV+PE Sbjct: 121 AERRYRNIFENSIEGIFQTSQDGQYINANPALARIYGYESPEELIQSLNNIAQQLYVQPE 180 Query: 197 RRQEFMRLMEEQGSVSNFESRVYRRDGEIIWISENARAVYDEAGKLSCYEGTVEAITERK 256 RQ F+ LM+ + V NFES++YRRDG IWISENARAV ++ GKL +EGTVE ITERK Sbjct: 181 SRQAFLTLMQLEDRVVNFESQIYRRDGSTIWISENARAVRNDEGKLLYFEGTVEDITERK 240 Query: 257 AHEAEMRHQATHDALTGLPNRNMLHEHLQRALRVARQKGALTAVAFVDLDQFKFINDSLG 316 ++ A + +QATHD LTGLPNR ++ + L +A+ A + + AV FVDLD+FK INDS+G Sbjct: 241 SYNALIEYQATHDDLTGLPNRTLMQDRLLQAISYADRTASKLAVVFVDLDKFKDINDSMG 300 Query: 317 HQVGDELLKTVAQRLQACLREADMVARQGGDEFVLVLQNQTEGEAGIAEVMQRILAAVAR 376 H +GD+LL +A+RL++C+R++D VAR GGDEFVL+L N G +++ +QR+LA + Sbjct: 301 HFIGDQLLIAMARRLESCIRDSDTVARPGGDEFVLLLSN-IHGMDALSQTLQRVLALTSE 359 Query: 377 PWQAGDREFQVTASIGVSRYPADGKDVESLLKHADSAMYRAKEQGRNNFQFFAPWMDSQV 436 P ++F VT+SIG+S YP DGK E+LLK+AD+AMY+AK++G+NNFQF+ ++S + Sbjct: 360 PCSIEGKDFTVTSSIGISLYPDDGKTSETLLKNADTAMYKAKQEGKNNFQFYTRELNSIL 419 Query: 437 SNRLEMLINLRRALDQDEFKLYYQPKLSLQDGRLIGAEALIRWESPQQGMVPPDRFIPFA 496 RLEM +R AL +EF L+YQPKL+L+ R+ G EALIRW +P+QG++ P+RFIP A Sbjct: 420 VERLEMEYQMRNALGHNEFHLHYQPKLNLRTQRITGVEALIRWHNPRQGLISPNRFIPIA 479 Query: 497 EEAGLIVPIGEWVLRTACRQNQAWQQAGLPPIPVAVNLSPRQLNQS-LPDFVAGVLAQSG 555 EE+ LI IG WVL AC ++ A Q +PV+VN+SPRQ QS L ++ VL ++G Sbjct: 480 EESSLIEQIGSWVLEKACMESIALSQLSGYDVPVSVNVSPRQFQQSNLVGNISRVLQETG 539 Query: 556 LAASWLELEITENVVMKDAEKSVATLHALKRLGLQISVDDFGTGYSSLSYLRRFPVDALK 615 L S LELEITE + + + + L+ LK LG+++++DDFGTGYSSL YL+ FP+D LK Sbjct: 540 LKPSLLELEITEGTLADTSPQFIKVLNDLKGLGIKLAIDDFGTGYSSLGYLKHFPIDNLK 599 Query: 616 IDKSFVRDIVRDADSAAIVKAIISLAHILNLRVIAEGVEDEEQHAFLKENACDEVQGYYF 675 ID+SFV + D + AI+KAI++L H L + ++AEGVE E Q FL CDE+QG+ F Sbjct: 600 IDRSFVMGLESDTANQAILKAIVALGHNLGINLVAEGVETERQRDFLLSIGCDEMQGFLF 659 Query: 676 GKPM 679 +P+ Sbjct: 660 SQPL 663 >ref|YP_003522697.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] gb|ADE10310.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sideroxydans lithotrophicus ES-1] Length = 716 Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/691 (52%), Positives = 480/691 (69%), Gaps = 3/691 (0%) Query: 3 IPRSPRLLETLLVNLDGVVYRCRDDAQWTMEFVSEGCLALTGYLPEDLLLNQRLSFLELT 62 + S R+L+ LL NLDG+VY C DA WTM FV +GC LTGY + ++ + +T Sbjct: 25 LENSERMLKALLNNLDGMVYCCLYDADWTMVFVGDGCKQLTGYDAQ-AFVSSEICLEAIT 83 Query: 63 HPEDRTLVRNHVDACMRERRRIDIEYRIVRADGAVRWVWERGVGIYNANGQVEAIEGFLQ 122 PEDR V + + +R +EYRI+ ADG RWV ERG +Y+ NG+VEAIEGF+Q Sbjct: 84 IPEDREPVNKAIGDAISNGKRFAVEYRIIHADGRTRWVSERGCPLYDDNGEVEAIEGFMQ 143 Query: 123 DVTERKEAAQALQEAERRYRSIFENAIEGVFQTTPDGTYIAVNPALARIYGYHSPEDLIV 182 DVT+RK + A ++AE RYRSIFENA+EG++QTTPDG Y+ NPALARIYGY S DL+ Sbjct: 144 DVTQRKLSEVAARDAEERYRSIFENALEGIYQTTPDGHYLNFNPALARIYGYESAVDLVC 203 Query: 183 GLRDISHQLYVEPERRQEFMRLMEEQGSVSNFESRVYRRDGEIIWISENARAVYDEAGKL 242 + DI QLYV+P++RQEF+ LM G VSNFE++VYR+ GEIIWISENA V D GKL Sbjct: 204 SISDIQQQLYVDPDKRQEFITLMNVHGQVSNFEAQVYRKGGEIIWISENAHEVKDRDGKL 263 Query: 243 SCYEGTVEAITERKAHEAEMRHQATHDALTGLPNRNMLHEHLQRALRVARQKGALTAVAF 302 YEGTVE ITERK +E ++ +QATHDALTGLPNR +L + LQ+ + +A + + AVAF Sbjct: 264 LFYEGTVEDITERKNYEQQIEYQATHDALTGLPNRTLLADRLQQYIGIADRYTSKLAVAF 323 Query: 303 VDLDQFKFINDSLGHQVGDELLKTVAQRLQACLREADMVARQGGDEFVLVLQNQTEGEAG 362 VDLDQFK INDS+GH GDELLK +A RL +C+RE+D V R GGDEFVL+L + E Sbjct: 324 VDLDQFKLINDSMGHHAGDELLKIMAARLASCVRESDTVVRLGGDEFVLLLTGLHKIE-D 382 Query: 363 IAEVMQRILAAVARPWQAGDREFQVTASIGVSRYPADGKDVESLLKHADSAMYRAKEQGR 422 I+E MQR+L++VA P DR+F V+ SIG+S YP D +D +LLK+ADSAMY++K+ GR Sbjct: 383 ISESMQRVLSSVAGPCTIEDRDFVVSCSIGISIYPDDARDTTTLLKYADSAMYKSKQSGR 442 Query: 423 NNFQFFAPWMDSQVSNRLEMLINLRRALDQDEFKLYYQPKLSLQDGRLIGAEALIRWESP 482 NNFQF+ ++ ++ RL++ LR AL+ +EF L+YQPKL+L G + GAEALIRW+ Sbjct: 443 NNFQFYTDELNQRLMERLDLEYRLRLALENEEFLLHYQPKLALVSGAICGAEALIRWQPA 502 Query: 483 QQGMVPPDRFIPFAEEAGLIVPIGEWVLRTACRQNQAWQQAGLPPIPVAVNLSPRQLNQS 542 + M+ P FIP AEE GLI IG WVL ACRQ + +P+AVN+SPRQ QS Sbjct: 503 GESMISPASFIPIAEETGLIEDIGLWVLHEACRQAVKLNRLYGRELPIAVNVSPRQFRQS 562 Query: 543 -LPDFVAGVLAQSGLAASWLELEITENVVMKDAEKSVATLHALKRLGLQISVDDFGTGYS 601 L V L SGL + LELEITE+ ++ D + TL LK LG+ +++DDFGTGYS Sbjct: 563 DLVSMVRSALLNSGLNPACLELEITESSLVHDTGSFIKTLQELKNLGVGLAIDDFGTGYS 622 Query: 602 SLSYLRRFPVDALKIDKSFVRDIVRDADSAAIVKAIISLAHILNLRVIAEGVEDEEQHAF 661 S++YL+ FPVD LKID+ FV ++ + + AI+KAI++L H LN++VIAEGVE Q AF Sbjct: 623 SMAYLKDFPVDRLKIDQVFVSNLEAEPSNIAILKAIVALGHSLNMKVIAEGVETAYQKAF 682 Query: 662 LKENACDEVQGYYFGKPMEVAVFTAWMSEQA 692 L CDE+QGY+F KP+ + F +S+ Sbjct: 683 LLGIGCDEMQGYHFSKPLHMDTFGKLLSDSC 713 >ref|YP_003674552.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera versatilis 301] gb|ADI29975.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylotenera versatilis 301] Length = 710 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/685 (51%), Positives = 484/685 (70%), Gaps = 2/685 (0%) Query: 8 RLLETLLVNLDGVVYRCRDDAQWTMEFVSEGCLALTGYLPEDLLLNQRLSFLELTHPEDR 67 R+L+TL+ NL+G+VY D WTM +VS+GC LTGY P+DL+ N +S+ E+ +DR Sbjct: 23 RMLDTLVDNLEGLVYCNLYDQHWTMIYVSDGCKDLTGYFPDDLIFNNLVSYEEIIFKDDR 82 Query: 68 TLVRNHVDACMRERRRIDIEYRIVRADGAVRWVWERGVGIYNANGQVEAIEGFLQDVTER 127 LVR +D +++ +R ++EYRI A+ + WV ERG IYNA G+V AIEGF+Q++T+R Sbjct: 83 ALVRYAIDEAVKQGKRFEVEYRIRHANTDIIWVCERGNPIYNAKGKVHAIEGFIQNITQR 142 Query: 128 KEAAQALQEAERRYRSIFENAIEGVFQTTPDGTYIAVNPALARIYGYHSPEDLIVGLRDI 187 K A Q+L +AE RYRSIFENAIEG+FQT+P+G Y+ VNPALA+IYGY SPE+LI L +I Sbjct: 143 KAAEQSLHDAEFRYRSIFENAIEGIFQTSPNGHYLIVNPALAKIYGYSSPEELISVLNNI 202 Query: 188 SHQLYVEPERRQEFMRLMEEQGSVSNFESRVYRRDGEIIWISENARAVYDEAGKLSCYEG 247 QLYV P RR+EF++ M SV NFES VY++D IWISENAR V+D+AG L YEG Sbjct: 203 QQQLYVTPGRREEFVQAMLANQSVHNFESLVYKKDNSTIWISENARMVHDKAGNLLYYEG 262 Query: 248 TVEAITERKAHEAEMRHQATHDALTGLPNRNMLHEHLQRALRVARQKGALTAVAFVDLDQ 307 TVE IT RK ++ ++ HQA HD+LTGLPNR ML++ LQ+++ A + AVAFVDLDQ Sbjct: 263 TVEDITARKNYDHKIEHQAKHDSLTGLPNRYMLNDRLQQSINFADRYKNKMAVAFVDLDQ 322 Query: 308 FKFINDSLGHQVGDELLKTVAQRLQACLREADMVARQGGDEFVLVLQNQTEGEAGIAEVM 367 FK INDS+GH+VGD+LL +++RL +C+RE D V R GGDEFV++L N E + M Sbjct: 323 FKLINDSMGHEVGDQLLLIMSKRLSSCIREVDTVVRLGGDEFVILLTN-IENVNDVLISM 381 Query: 368 QRILAAVARPWQAGDREFQVTASIGVSRYPADGKDVESLLKHADSAMYRAKEQGRNNFQF 427 QR+L AVA P + ++ VT+SIG+S YP DG + +LLK+AD+AMY+AK+ GRNN+Q Sbjct: 382 QRVLTAVAAPCVINELDYVVTSSIGISIYPDDGIEPNTLLKNADTAMYKAKKAGRNNYQI 441 Query: 428 FAPWMDSQVSNRLEMLINLRRALDQDEFKLYYQPKLSLQDGRLIGAEALIRWESPQQGMV 487 + ++ ++ R+ M LR A++ E L+YQPK+ G + GAEALIRW++P+ ++ Sbjct: 442 YTQELNEALTERVTMEYRLRLAIENGELLLHYQPKVDFATGLISGAEALIRWQTPEGELI 501 Query: 488 PPDRFIPFAEEAGLIVPIGEWVLRTACRQNQAWQQAGLPPIPVAVNLSPRQLNQ-SLPDF 546 PP +FI AEE GLI IGEWVL AC++ + ++ PIP+AVN+SPRQ Q +L Sbjct: 502 PPVKFIHIAEETGLIESIGEWVLIEACKKAKELKEKMGRPIPIAVNVSPRQFKQPNLAQT 561 Query: 547 VAGVLAQSGLAASWLELEITENVVMKDAEKSVATLHALKRLGLQISVDDFGTGYSSLSYL 606 + L + L LELEITE+ ++ DA K + TLHALK +G+++++DDFGTGYSSL+YL Sbjct: 562 IKNTLELTNLDPDCLELEITESTLIDDAAKFIQTLHALKTIGIKLAIDDFGTGYSSLAYL 621 Query: 607 RRFPVDALKIDKSFVRDIVRDADSAAIVKAIISLAHILNLRVIAEGVEDEEQHAFLKENA 666 + FP+D LKIDK+FV ++ D + AI+KAII L L ++VIAEGVE QH +L+ Sbjct: 622 KDFPIDRLKIDKAFVSNLENDPANTAILKAIIVLGQSLGMKVIAEGVETRFQHDYLQSIG 681 Query: 667 CDEVQGYYFGKPMEVAVFTAWMSEQ 691 CDE+QGYYF KP+ F A + Q Sbjct: 682 CDELQGYYFSKPIPAIEFEALLQNQ 706 >ref|YP_003048286.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Methylotenera mobilis JLW8] gb|ACT47759.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylotenera mobilis JLW8] Length = 699 Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/695 (50%), Positives = 479/695 (68%), Gaps = 2/695 (0%) Query: 1 VAIPRSPRLLETLLVNLDGVVYRCRDDAQWTMEFVSEGCLALTGYLPEDLLLNQRLSFLE 60 VA + + L+ NL+G++Y C D WTM FVS GC LTGY PEDLL NQ +S+ Sbjct: 2 VAFKNDKHMHDALIHNLEGMLYCCLYDQDWTMVFVSNGCKELTGYAPEDLLHNQYISYEA 61 Query: 61 LTHPEDRTLVRNHVDACMRERRRIDIEYRIVRADGAVRWVWERGVGIYNANGQVEAIEGF 120 +T EDR +VR+ + + E R ++EYRI ADG+V WV ERG IYN G V A+EG+ Sbjct: 62 VTFAEDRVMVRDTIQNALTEGNRYEVEYRINHADGSVIWVLERGNPIYNNAGMVIALEGY 121 Query: 121 LQDVTERKEAAQALQEAERRYRSIFENAIEGVFQTTPDGTYIAVNPALARIYGYHSPEDL 180 +Q++ +RK Q+L AE +YRSIFEN +EG+FQTT DG Y+ VN +LA +YGY SP++L Sbjct: 122 IQNIAKRKGIEQSLLAAELKYRSIFENTLEGIFQTTADGHYLIVNQSLAHMYGYSSPDEL 181 Query: 181 IVGLRDISHQLYVEPERRQEFMRLMEEQGSVSNFESRVYRRDGEIIWISENARAVYDEAG 240 I I QLYV+P RR+EF++L++E SV FES VYR+D IWISENAR V DE+G Sbjct: 182 IHAFNSIQEQLYVKPGRREEFVQLLKENESVEKFESLVYRKDKSTIWISENARVVNDESG 241 Query: 241 KLSCYEGTVEAITERKAHEAEMRHQATHDALTGLPNRNMLHEHLQRALRVARQKGALTAV 300 + YEGTVE IT RK +E ++ +QA HD+LTGLPNRNML++ LQ + A + AV Sbjct: 242 NILYYEGTVENITARKNYEEKLEYQAMHDSLTGLPNRNMLNDRLQLCINFANRYKNKMAV 301 Query: 301 AFVDLDQFKFINDSLGHQVGDELLKTVAQRLQACLREADMVARQGGDEFVLVLQNQTEGE 360 AF+DLDQFK INDS+GH+VGD+LL +A+RL + +RE D V R GGDEFV+VL N + Sbjct: 302 AFLDLDQFKLINDSMGHEVGDQLLVIMAKRLSSAVREIDTVVRLGGDEFVIVLTN-IDDT 360 Query: 361 AGIAEVMQRILAAVARPWQAGDREFQVTASIGVSRYPADGKDVESLLKHADSAMYRAKEQ 420 I MQRIL AVA P + ++ VT SIGVS YP DG D LL++AD+AMY+AK+ Sbjct: 361 NDIFMSMQRILEAVAVPLTINNMDYLVTCSIGVSIYPDDGLDANLLLRNADTAMYKAKKA 420 Query: 421 GRNNFQFFAPWMDSQVSNRLEMLINLRRALDQDEFKLYYQPKLSLQDGRLIGAEALIRWE 480 GRNNFQ + +++ ++ R+ + NLR+A++ +EF L+YQPK+ G++ GAEALIRW+ Sbjct: 421 GRNNFQIYTQALNAALTERVTLEYNLRQAIELEEFILHYQPKVDFATGKVCGAEALIRWQ 480 Query: 481 SPQQGMVPPDRFIPFAEEAGLIVPIGEWVLRTACRQNQAWQQAGLPPIPVAVNLSPRQLN 540 Q ++ P +FI AEE GLI IGEWVL TAC + +A QQ +P+AVN+SPRQ Sbjct: 481 PEGQDLISPLKFINIAEETGLIETIGEWVLATACYKAKALQQKTGLHVPIAVNVSPRQFR 540 Query: 541 QS-LPDFVAGVLAQSGLAASWLELEITENVVMKDAEKSVATLHALKRLGLQISVDDFGTG 599 QS L + + +LA + L S+LELEITEN ++ D+ K + TLH+LK+LG+++++DDFGTG Sbjct: 541 QSNLANTIKKILAVTQLDPSYLELEITENTLIDDSSKFIETLHSLKKLGVKLAIDDFGTG 600 Query: 600 YSSLSYLRRFPVDALKIDKSFVRDIVRDADSAAIVKAIISLAHILNLRVIAEGVEDEEQH 659 YSSL+YL+ FP+D LKIDK FV I D + AI+KAI+ L L + VIAEGVE + Q+ Sbjct: 601 YSSLAYLKDFPIDRLKIDKVFVSSIEEDPTNKAILKAIVVLGQSLGIEVIAEGVETQYQY 660 Query: 660 AFLKENACDEVQGYYFGKPMEVAVFTAWMSEQAQA 694 +LK CD++QGYY+ KP+ F ++ Q + Sbjct: 661 DYLKSIGCDQLQGYYYSKPLPEQQFEQFLLTQPNS 695 >ref|ZP_08406410.1| sensory box/GGDEF family protein [Hylemonella gracilis ATCC 19624] gb|EGI76423.1| sensory box/GGDEF family protein [Hylemonella gracilis ATCC 19624] Length = 702 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/690 (49%), Positives = 467/690 (67%), Gaps = 11/690 (1%) Query: 9 LLETLLVNLDGVVYRCRDDAQWTMEFVSEGCLALTGYLPEDLLLNQRLSFLELTHPEDRT 68 +L+TL+ NLDG+ YRC +DA WTM FVS+GCLALTGY P++L+ N +S+ ++THP DR Sbjct: 1 MLDTLINNLDGMAYRCLNDAHWTMVFVSQGCLALTGYTPQELVHNAVVSWEQITHPLDRE 60 Query: 69 LVRNHVDACMRERRRIDIEYRIVRADGAVRWVWERGVGIYNANGQVEAIEGFLQDVTERK 128 VR V R ++YRIV DG V+WV ERGV + + G + IEGF++DVT ++ Sbjct: 61 RVRTSVATTSSTNLRFAVDYRIVSKDGTVKWVHERGVAVADEQGTL-VIEGFIEDVTSQR 119 Query: 129 EAAQALQEAERRYRSIFENAIEGVFQTTPDGTYIAVNPALARIYGYHSPEDLIVGLRDIS 188 A+A Q AE+RYR IFE+A EG+FQ+TP+G Y+ VNPALAR+YGY + + LI GL++IS Sbjct: 120 ALAEAQQAAEQRYRHIFEHASEGIFQSTPEGHYLEVNPALARLYGYENAQALITGLQNIS 179 Query: 189 HQLYVEPERRQEFMRLMEEQGSVSNFESRVYRRDGEIIWISENARAVYDEAGKLSCYEGT 248 QLYV+ +R+ F ++M EQG + NFES +YR DG IWISENA V D G L YEGT Sbjct: 180 RQLYVKEGQRELFRQIMAEQGEILNFESEIYRADGSRIWISENAHTVCDAEGNLLYYEGT 239 Query: 249 VEAITERKAHEAEMRHQATHDALTGLPNRNMLHEHLQRALRVARQKGALTAVAFVDLDQF 308 V+ I+ER+ ++ E+ HQA HD LTGLPNR +L + +++ + A + G V F+DLD F Sbjct: 240 VQDISERRRYQQELEHQANHDTLTGLPNRMLLSDRVEQGIARAERLGYHLVVVFIDLDHF 299 Query: 309 KFINDSLGHQVGDELLKTVAQRLQACLREADMVARQGGDEFVLVLQNQTEGEAGIAEVMQ 368 KFINDSLGH GDELLK VA RL+ C+R +D VAR GGDEFVL+L + I + +Q Sbjct: 300 KFINDSLGHDAGDELLKEVALRLRRCVRASDTVARLGGDEFVLLLADHFRSSTVIDQ-LQ 358 Query: 369 RILAAVARPWQAGDREFQVTASIGVSRYPADGKDVESLLKHADSAMYRAKEQGRNNFQFF 428 R+L+ +++P Q REFQV AS+GV+ YP DG+D SL KHAD+AMY AK GRNNFQFF Sbjct: 359 RVLSEISQPVQLSGREFQVGASLGVAMYPGDGEDALSLFKHADAAMYAAKGNGRNNFQFF 418 Query: 429 APWMDSQVSNRLEMLINLRRALDQDEFKLYYQPKLSLQDGRLIGAEALIRWESPQQGMVP 488 ++ + RL + LR A+D D F+++YQPK + R+IG EAL RW P+ G + Sbjct: 419 TRELNHVATERLHLEAALRHAIDHDGFEVHYQPKTD-ANRRIIGMEALARWRPPEYGPIS 477 Query: 489 PDRFIPFAEEAGLIVPIGEWVLRTACRQNQAWQQA---GLPPIPVAVNLSPRQ-LNQSLP 544 PDRFIP AE++GLI+P+ +L+ A + W + P+ +AVNLSPR L+ + Sbjct: 478 PDRFIPIAEDSGLILPLTMTILQRAFVATRRWNEGRDLKRNPLRIAVNLSPRLFLSDDIV 537 Query: 545 DFVAGVLAQSGLAASWLELEITENVVMKDAEKSVATLHALKRLGLQISVDDFGTGYSSLS 604 V +L + L+ +ELEITE V M +E+ + TL K+LGLQ+++DDFGTGYS+LS Sbjct: 538 SHVHRLLRDADLSPELVELEITETVFMSRSERVLETLIQFKQLGLQLAMDDFGTGYSALS 597 Query: 605 YLRRFPVDALKIDKSFVRDIVRDADSAAIVKAIISLAHILNLRVIAEGVEDEEQHAFLKE 664 YLRRFP+D +KID+S V I R+ + A I +A++SL L+ V+AEGVE++ Q FL+ Sbjct: 598 YLRRFPLDIIKIDRSLVTGIEREEEVAMIARAVLSLGQSLHKTVVAEGVENQAQFDFLRS 657 Query: 665 NACDEVQGYYFGKPMEVAVFTAWMSEQAQA 694 CDE QGY +P+ A MSE Q+ Sbjct: 658 QGCDEFQGYLLSRPLS----EAGMSELLQS 683 >ref|YP_004714071.1| sensory box/GGDEF family protein [Pseudomonas stutzeri ATCC 17588 = LMG 11199] gb|AEJ04982.1| sensory box/GGDEF family protein [Pseudomonas stutzeri ATCC 17588 = LMG 11199] Length = 732 Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/683 (48%), Positives = 453/683 (66%), Gaps = 4/683 (0%) Query: 8 RLLETLLVNLDGVVYRCRDDAQWTMEFVSEGCLALTGYLPEDLLLNQRLSFLELTHPEDR 67 R+L+TL+ NL+G+ YRCR+DA WTM FVS+G L L GY L+ + +S+ ++THP+DR Sbjct: 46 RVLDTLVNNLEGMAYRCRNDASWTMIFVSQGSLGLCGYSAAALVDDAEVSWEQITHPDDR 105 Query: 68 TLVRNHVDACMRERRRIDIEYRIVRADGAVRWVWERGVGIYNANGQVEAIEGFLQDVTER 127 VR +D + R + YRI A G ++WV ERGV + + G++ +EGF++D+T + Sbjct: 106 ARVRRSIDGAIAALGRFTVHYRIRTAAGFIKWVIERGVAVPDEQGEI-VVEGFIEDITAQ 164 Query: 128 KEAAQALQEAERRYRSIFENAIEGVFQTTPDGTYIAVNPALARIYGYHSPEDLIVGLRDI 187 + +AL++AE RYRSIFENA EG+FQ+T DG Y+A NPALARIYGY S +L+ L DI Sbjct: 165 RAVLEALEQAELRYRSIFENASEGIFQSTRDGRYLAANPALARIYGYDSASELVADLADI 224 Query: 188 SHQLYVEPERRQEFMRLMEEQGSVSNFESRVYRRDGEIIWISENARAVYDEAGKLSCYEG 247 +LYV+P RR+ F +LME+ G V NFES VYRRD IWISENA V G+ CYEG Sbjct: 225 ERRLYVQPGRREAFCQLMEQHGEVLNFESEVYRRDCTRIWISENAHVVRGPNGEFICYEG 284 Query: 248 TVEAITERKAHEAEMRHQATHDALTGLPNRNMLHEHLQRALRVARQKGALTAVAFVDLDQ 307 TV+ I+ERK ++ ++ QA HD LTGLPNR +L++ +++ L A + G + F+DLD Sbjct: 285 TVQDISERKHYQQQLERQANHDLLTGLPNRILLNDRIEQGLARAARLGYYLTLVFIDLDN 344 Query: 308 FKFINDSLGHQVGDELLKTVAQRLQACLREADMVARQGGDEFVLVLQNQTEGEAGIAEVM 367 FKFIND LGH GDELLK++A RL LR +D VAR GGDEFVLVL + I+ ++ Sbjct: 345 FKFINDGLGHVAGDELLKSIAARLAGSLRGSDTVARVGGDEFVLVLGDHYRISTVIS-LL 403 Query: 368 QRILAAVARPWQAGDREFQVTASIGVSRYPADGKDVESLLKHADSAMYRAKEQGRNNFQF 427 +R+L + RP REFQV AS+GV+ +P DG+D ++LLKHAD AMY AK++GRNNFQF Sbjct: 404 ERVLNEIRRPVTLAGREFQVGASLGVAMFPDDGEDAQTLLKHADIAMYAAKKRGRNNFQF 463 Query: 428 FAPWMDSQVSNRLEMLINLRRALDQDEFKLYYQPKLSLQDGRLIGAEALIRWESPQQGMV 487 F ++ RL + +R AL++DEF ++YQPK+ Q R++G EAL RW G++ Sbjct: 464 FTHDLNRIADERLNLEAAMRTALERDEFAVHYQPKVDAQR-RIVGLEALARWTHADLGVI 522 Query: 488 PPDRFIPFAEEAGLIVPIGEWVLRTACRQNQAWQQAGLPPIPVAVNLSPRQ-LNQSLPDF 546 PDRF+P AEE+GLI+P+ VLR A + W P+ VAVNLSP L + + Sbjct: 523 GPDRFVPVAEESGLIMPLTLAVLRRAFSDARRWNAGRQVPLLVAVNLSPLLFLGDDVVER 582 Query: 547 VAGVLAQSGLAASWLELEITENVVMKDAEKSVATLHALKRLGLQISVDDFGTGYSSLSYL 606 V VL + GL+ +ELEITE V + D ++V+ L K G ++++DDFGTGYS+L YL Sbjct: 583 VMAVLDEVGLSPLLVELEITETVFLGDGSRAVSILADFKARGFRLAMDDFGTGYSALGYL 642 Query: 607 RRFPVDALKIDKSFVRDIVRDADSAAIVKAIISLAHILNLRVIAEGVEDEEQHAFLKENA 666 RRFP+D +KID+S V + ++ + A I +A ISL L+ V+AEGVE+ Q FL+ N Sbjct: 643 RRFPLDIIKIDRSLVTGLEQEDEVAMIARAAISLGKSLHKTVVAEGVENAAQFEFLRHNG 702 Query: 667 CDEVQGYYFGKPMEVAVFTAWMS 689 CDE QGY +P+ A ++ Sbjct: 703 CDEFQGYLLSRPLPATGIDALLA 725