BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0021.p (677 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776993.1| 16S rRNA uridine-516 pseudouridylate synthas... 949 0.0 ref|YP_001100689.1| putative pseudouridine synthase (Uracil hydr... 544 e-152 ref|YP_001354188.1| ribosomal large subunit pseudouridine syntha... 539 e-151 ref|YP_004754093.1| ribosomal large subunit pseudouridine syntha... 536 e-150 ref|ZP_08276235.1| Ribosomal large subunit pseudouridine synthas... 517 e-144 ref|ZP_04576065.1| ribosomal large subunit pseudouridine synthas... 483 e-134 ref|ZP_04578255.1| ribosomal large subunit pseudouridine synthas... 478 e-132 ref|YP_558192.1| ribosomal large subunit pseudouridine synthase ... 455 e-125 ref|ZP_02887588.1| pseudouridine synthase [Burkholderia graminis... 454 e-125 ref|ZP_06841598.1| pseudouridine synthase [Burkholderia sp. Ch1-... 453 e-125 >ref|YP_003776993.1| 16S rRNA uridine-516 pseudouridylate synthase [Herbaspirillum seropedicae SmR1] gb|ADJ65085.1| 16S rRNA uridine-516 pseudouridylate synthase protein [Herbaspirillum seropedicae SmR1] Length = 560 Score = 949 bits (2454), Expect = 0.0, Method: Compositional matrix adjust. Identities = 560/562 (99%), Positives = 560/562 (99%), Gaps = 2/562 (0%) Query: 116 MDAPAKAKPAKTAKPRGKAKPVEAEQIAAPAPAELPKVIVTVGDEVVAPPVLLDAPADPN 175 MDAPAKAKPAKTAKPRGKAKPVEAEQIAAPAPAELPKVIVTVGDEVVAPPVLLDAPADPN Sbjct: 1 MDAPAKAKPAKTAKPRGKAKPVEAEQIAAPAPAELPKVIVTVGDEVVAPPVLLDAPADPN 60 Query: 176 RNKPARRGVRGPRALRNNRAAQRAAASAEGGVPGKADNGAAPEQQPRGQFGKGHGQGGQN 235 RNKPARRGVRGPRALRNNRAAQRAAASAEGGVPGKADNGAAPEQQPRGQFGKGHGQGGQN Sbjct: 61 RNKPARRGVRGPRALRNNRAAQRAAASAEGGVPGKADNGAAPEQQPRGQFGKGHGQGGQN 120 Query: 236 AQNGQGQQGKKNFDKNGKKPKAPQLGLRAAEPVDDIFSYVTSEAYDRDENPKGGARQPHQ 295 AQNGQGQQGKKNFDKNGKKPKAPQLGLRAAEPVDDIFSYVTSEAYDRDENPKGGARQPHQ Sbjct: 121 AQNGQGQQGKKNFDKNGKKPKAPQLGLRAAEPVDDIFSYVTSEAYDRDENPKGGARQPHQ 180 Query: 296 MRGKNGRRDLTAEDDAPKLHKVLADAGLGSRRDMEELIVAGRVSVNGEPAHIGQRILPTD 355 MRGKNGRRDLTAEDDAPKLHKVLADAGLGSRRDMEELIVAGRVSVNGEPAHIGQRILPTD Sbjct: 181 MRGKNGRRDLTAEDDAPKLHKVLADAGLGSRRDMEELIVAGRVSVNGEPAHIGQRILPTD 240 Query: 356 AVRINGKLIQRKVSKRPPRVLVYHKPAGEIVSHADPEGRNSVFDRLPTMKAGKWLAVGRL 415 AVRINGKLIQRKVSKRPPRVLVYHKPAGEIVSHADPEGRNSVFDRLPTMKAGKWLAVGRL Sbjct: 241 AVRINGKLIQRKVSKRPPRVLVYHKPAGEIVSHADPEGRNSVFDRLPTMKAGKWLAVGRL 300 Query: 416 DYNTEGLLLFTTSGDLANRLMHPRYNIEREYAVRTLGELEEGMRQKLLSGVELDDGPAQF 475 DYNTEGLLLFTTSGDLANRLMHPRYNIEREYAVRTLGELEEGMRQKLLSGVELDDGPAQF Sbjct: 301 DYNTEGLLLFTTSGDLANRLMHPRYNIEREYAVRTLGELEEGMRQKLLSGVELDDGPAQF 360 Query: 476 SRIADGGGEGVNKWYRVTIGEGRNREVRRMFEAVGLTVSRLIRTRYGAMTLPQTLRRGRW 535 SRIADGGGEGVNKWYRVTIGEGRNREVRRMFEAVGLTVSRLIRTRYGAMTLPQTLRRGRW Sbjct: 361 SRIADGGGEGVNKWYRVTIGEGRNREVRRMFEAVGLTVSRLIRTRYGAMTLPQTLRRGRW 420 Query: 536 EELEENAVRNLMAACGLEKQAGEGKSGNGGHAGKGQGNGNGNGPRGNAMQNKGPQKGRGG 595 EELEENAVRNLMAACGLEKQAGEGKSGNGGHAGKGQ GNGNGPRGNAMQNKGPQKGRGG Sbjct: 421 EELEENAVRNLMAACGLEKQAGEGKSGNGGHAGKGQ--GNGNGPRGNAMQNKGPQKGRGG 478 Query: 596 NYGNQGGNYGNQGGNYGNQGGGYGGGNKGGQPKSRQPDPLQTALGFPDAGQRRNNRPQRG 655 NYGNQGGNYGNQGGNYGNQGGGYGGGNKGGQPKSRQPDPLQTALGFPDAGQRRNNRPQRG Sbjct: 479 NYGNQGGNYGNQGGNYGNQGGGYGGGNKGGQPKSRQPDPLQTALGFPDAGQRRNNRPQRG 538 Query: 656 GNSAPNFMLGGLPGMNRRRGGR 677 GNSAPNFMLGGLPGMNRRRGGR Sbjct: 539 GNSAPNFMLGGLPGMNRRRGGR 560 >ref|YP_001100689.1| putative pseudouridine synthase (Uracil hydrolyase) [Herminiimonas arsenicoxydans] emb|CAL62568.1| Pseudouridine synthase [Herminiimonas arsenicoxydans] Length = 538 Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust. Identities = 309/498 (62%), Positives = 356/498 (71%), Gaps = 43/498 (8%) Query: 178 KPARRGVRGPRALRNNRAAQRAAASAEGGVPGKADNGAAPEQQ------PRGQFGKGHGQ 231 KP +RG+RGPR LR R A R+ + N PE+Q + G + Sbjct: 42 KPVKRGLRGPRTLRRARNAPRSGPA----------NHDTPEEQNAVVVETQAVPASGEVR 91 Query: 232 GGQNAQNGQGQQGKKNFDKNGKKP--KAPQLGLRAAE---PVDDIFSYVTSEAYDR---D 283 +N + + Q G K K+ K P G + DD+FS+VTSEA+D D Sbjct: 92 RERNPRRDERQPGTKGPQKSSGKSGGAGPNRGSKPHSRGGDADDVFSFVTSEAFDTLSVD 151 Query: 284 ENPKGGARQPHQMRGKNGRRDLTAEDDAPKLHKVLADAGLGSRRDMEELIVAGRVSVNGE 343 ++ GG R+P Q K+ RRDLTA+DDAPKLHKVLA+AGLGSRRDMEELI+AGRVSVNGE Sbjct: 152 DDKAGGKRRPEQ---KSVRRDLTADDDAPKLHKVLAEAGLGSRRDMEELIIAGRVSVNGE 208 Query: 344 PAHIGQRILPTDAVRINGKLIQRKVSKRPPRVLVYHKPAGEIVSHADPEGRNSVFDRLPT 403 PAHIGQRILP D VRINGKLIQRKVS +PPRVLVYHKPAGEIVS DPEGR SVF+RLPT Sbjct: 209 PAHIGQRILPADQVRINGKLIQRKVSNKPPRVLVYHKPAGEIVSTNDPEGRPSVFERLPT 268 Query: 404 MKAGKWLAVGRLDYNTEGLLLFTTSGDLANRLMHPRYNIEREYAVRTLGELEEGMRQKLL 463 MKA KWLAVGRLD+NTEGLLLFTTSGDLANRLMHPRY I+REYAVRTLGELEEGMRQKLL Sbjct: 269 MKAAKWLAVGRLDFNTEGLLLFTTSGDLANRLMHPRYGIDREYAVRTLGELEEGMRQKLL 328 Query: 464 SGVELDDGPAQFSRIADGGGEGVNKWYRVTIGEGRNREVRRMFEAVGLTVSRLIRTRYGA 523 +GVEL+DG AQFS+IADGGGEGVNKWYRVTIGEGRNREVRRMFEA+GLTVSRLIRTRYG Sbjct: 329 AGVELEDGLAQFSKIADGGGEGVNKWYRVTIGEGRNREVRRMFEAIGLTVSRLIRTRYGT 388 Query: 524 MTLPQTLRRGRWEELEENAVRNLMAACGLEKQAGEGKSGNGGHAGKGQGNGNGNGPRGNA 583 +TLP+ L+RGRWEE+EE+AVR+L+A GLEK++ +G A KG+ N P Sbjct: 389 LTLPKNLKRGRWEEMEEHAVRDLLAMSGLEKKSVDG-------APKGR-----NSPADRQ 436 Query: 584 MQNKGPQKGRGGNY---GNQGGNYGNQGGNYGNQGGGYGGGNKGGQPKSRQPDPLQTALG 640 N+ P+ G +Q GN G QG G G GG GQP+SRQPDPLQT+LG Sbjct: 437 NGNRAPRVDNGMGLPRSPSQWGNLGGQGRPQGQNGKPAGGRQGQGQPRSRQPDPLQTSLG 496 Query: 641 FPDAGQ-RRNNRPQRGGN 657 FP GQ RR+N P RG N Sbjct: 497 FPGMGQPRRSNGPNRGPN 514 >ref|YP_001354188.1| ribosomal large subunit pseudouridine synthase B [Janthinobacterium sp. Marseille] gb|ABR89575.1| ribosomal large subunit pseudouridine synthase B [Janthinobacterium sp. Marseille] Length = 546 Score = 539 bits (1388), Expect = e-151, Method: Compositional matrix adjust. Identities = 304/489 (62%), Positives = 345/489 (70%), Gaps = 33/489 (6%) Query: 178 KPARRGVRGPRALRNNRAAQRAAASAEGGVPGKADNGAAPEQQPRGQFGKGHGQG----- 232 KPA+RG+RGPR LR R R A K D ++ P+G+ G G Sbjct: 38 KPAKRGLRGPRTLRRARNTPREATEP---AVVKVDGAEGAQEMPQGEAGSAPADGEARRE 94 Query: 233 -------GQNAQNGQGQQGKKNFDKNGKKPKA-PQLGLR---AAEPVDDIFSYVTSEAYD 281 G+ +G +G GK A PQ G + A+ DD+FS+VTS+ +D Sbjct: 95 RTNNNRRGERQPGAKGAKGATRPQGRGKPNGAGPQRGGKPHGKADNADDVFSFVTSDDFD 154 Query: 282 R--DENPKGGARQPHQMRGKNGRRDLTAEDDAPKLHKVLADAGLGSRRDMEELIVAGRVS 339 E+ GG R+ Q K RRDLTA+DDAPKLHKVLA+AGLGSRRDMEELI+AGRVS Sbjct: 155 SLAAEDSAGGKRRHEQ---KTVRRDLTADDDAPKLHKVLAEAGLGSRRDMEELIIAGRVS 211 Query: 340 VNGEPAHIGQRILPTDAVRINGKLIQRKVSKRPPRVLVYHKPAGEIVSHADPEGRNSVFD 399 VNGEPAHIGQRILPTD VRINGKLIQRKVSK+PPRVLVYHKPAGEIVS DPEGR SVFD Sbjct: 212 VNGEPAHIGQRILPTDQVRINGKLIQRKVSKKPPRVLVYHKPAGEIVSTNDPEGRPSVFD 271 Query: 400 RLPTMKAGKWLAVGRLDYNTEGLLLFTTSGDLANRLMHPRYNIEREYAVRTLGELEEGMR 459 RLPTMKA KWLAVGRLD+NTEGLLLFTTSGDLANRLMHPRY I+REYAVRTLGELEEGMR Sbjct: 272 RLPTMKAAKWLAVGRLDFNTEGLLLFTTSGDLANRLMHPRYGIDREYAVRTLGELEEGMR 331 Query: 460 QKLLSGVELDDGPAQFSRIADGGGEGVNKWYRVTIGEGRNREVRRMFEAVGLTVSRLIRT 519 QKLL+GVEL+DG AQFS+IADGGGEGVNKWYRVTIGEGRNREVRRMFEA+GLTVSRLIRT Sbjct: 332 QKLLAGVELEDGLAQFSKIADGGGEGVNKWYRVTIGEGRNREVRRMFEAIGLTVSRLIRT 391 Query: 520 RYGAMTLPQTLRRGRWEELEENAVRNLMAACGLEKQAGEGKSGNGGHAGKGQGNGNGNGP 579 RYG +TLP+ L+RGRWEE+EE+AVR+L+A GL+K GE N G A G NG Sbjct: 392 RYGLLTLPKNLKRGRWEEMEEHAVRDLLALSGLDKNTGEAGPANKGRAA---GGDRVNGN 448 Query: 580 RGNAMQNKGPQKGRGGNYGNQGGNYGNQGGNYGNQGGGYGGGNKGGQPKSRQPDPLQTAL 639 R + N Q + N G G +QG G N+ GQ +SRQPDPLQT+L Sbjct: 449 RAPRVDNGLGQPRSPSQWQNTGTGQGR------SQGQNPGKPNRQGQQRSRQPDPLQTSL 502 Query: 640 GFPDAGQRR 648 GFP GQ R Sbjct: 503 GFPGMGQPR 511 >ref|YP_004754093.1| ribosomal large subunit pseudouridine synthase B [Collimonas fungivorans Ter331] gb|AEK63270.1| Ribosomal large subunit pseudouridine synthase B [Collimonas fungivorans Ter331] Length = 668 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 320/516 (62%), Positives = 365/516 (70%), Gaps = 50/516 (9%) Query: 174 PNRNKPARRGVRGPRALRNNRAAQRAAASAEG--------------GVPGKA-------D 212 P R +PA+RGVRGPRALR+NRAAQRA SA G P A D Sbjct: 127 PARERPAKRGVRGPRALRSNRAAQRAQESAAAASSAAEAGNAAVTEGQPSVAQVQAPAGD 186 Query: 213 NGAAPEQQPRGQFGKGHGQGGQNAQNGQGQQGKKNFDKNGKKPKAPQLGLRAAEP----- 267 A +Q RG G G+ G+ + +GKK +NGK P G R +P Sbjct: 187 PAAGEPRQQRGDRNNGAGRNGERNSRERQPKGKKPLAQNGK----PGQGPRGGKPSRGGD 242 Query: 268 VDDIFSYVTSEAYDRDENPKGGARQPHQMRGKNGRRDLTAEDDAPKLHKVLADAGLGSRR 327 D+ FS+VTSE++D + A + Q K+ RRDLTAEDDAPKLHKVLAD GLGSRR Sbjct: 243 ADEAFSFVTSESFDTLVTAEDAAGRQAQ---KSVRRDLTAEDDAPKLHKVLADVGLGSRR 299 Query: 328 DMEELIVAGRVSVNGEPAHIGQRILPTDAVRINGKLIQRKVSKRPPRVLVYHKPAGEIVS 387 DMEELI+AGRVSVNGEPAHIGQRILPTD VRINGKL+QRKVSKRPPRVLVYHKPAGEIVS Sbjct: 300 DMEELIIAGRVSVNGEPAHIGQRILPTDQVRINGKLLQRKVSKRPPRVLVYHKPAGEIVS 359 Query: 388 HADPEGRNSVFDRLPTMKAGKWLAVGRLDYNTEGLLLFTTSGDLANRLMHPRYNIEREYA 447 H DP+GR SVFDRLP MKA KWLAVGRLD+NTEGLLLFTTSGDLANRLMHPRY I+REYA Sbjct: 360 HNDPDGRPSVFDRLPNMKAAKWLAVGRLDFNTEGLLLFTTSGDLANRLMHPRYGIDREYA 419 Query: 448 VRTLGELEEGMRQKLLSGVELDDGPAQFSRIADGGGEGVNKWYRVTIGEGRNREVRRMFE 507 VRTLGELE+GMRQKLL+GVEL+DG AQF++IADGGGEG+NKWYRV IGEGRNREVRRMFE Sbjct: 420 VRTLGELEQGMRQKLLAGVELEDGVAQFTKIADGGGEGINKWYRVVIGEGRNREVRRMFE 479 Query: 508 AVGLTVSRLIRTRYGAMTLPQTLRRGRWEELEENAVRNLMAACGLEKQAGEGKSGNGGHA 567 A+GLTVSRLIRTRYGAMTLP+ L+RGRWEEL+ENAVR+++AA GL+K A +G G Sbjct: 480 AIGLTVSRLIRTRYGAMTLPRGLKRGRWEELDENAVRDMLAAHGLDKPAAGQGAGGGKGR 539 Query: 568 GKGQGNGNGNGPRGNAMQNKGPQKGRGGNYGNQGGNYGNQ-GGNYGNQ------------ 614 + NG R ++ PQ GG Y +G Q GN+G Q Sbjct: 540 PDFNKDRQPNGNRADS----APQGPGGGGYRGGDQGFGGQPRGNFGGQPRGNQGRGPGGG 595 Query: 615 GGGYGGGNKGGQPKSRQPDPLQTALGFPDAGQRRNN 650 G GG+ G P+SRQPDPLQTALGFPDAGQ+R N Sbjct: 596 QGRPQGGSGGQPPRSRQPDPLQTALGFPDAGQQRRN 631 >ref|ZP_08276235.1| Ribosomal large subunit pseudouridine synthase B [Oxalobacteraceae bacterium IMCC9480] gb|EGF30293.1| Ribosomal large subunit pseudouridine synthase B [Oxalobacteraceae bacterium IMCC9480] Length = 621 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 304/512 (59%), Positives = 345/512 (67%), Gaps = 58/512 (11%) Query: 181 RRGVRGPRALRNNRAAQRAAASAEGGVPGKADNGA---------------AP-EQQPRGQ 224 RR VRGPR LR R A A+ G A GA AP E +PR Sbjct: 74 RRNVRGPRNLRRTRDPVERNAVAQDGTAVVAQEGAPDPAQPAQVRPPRQHAPREARPRSN 133 Query: 225 FGKGHGQGGQNAQNGQGQQGKKNFDKNGKKPKAPQLGLRAAEPVDDIFSYVTSEAYDRDE 284 + GQGG AQ + +Q N +N + D +FS+VTS A+D Sbjct: 134 EDRPKGQGG--AQKSRQKQPAGNAARNAPR----------GTDADSVFSFVTSAAFDDST 181 Query: 285 -NPKGGARQPHQMRGKNGRRDLTAEDDAPKLHKVLADAGLGSRRDMEELIVAGRVSVNGE 343 + G R P K RRDLTA+DDAPKLHKVLA+AGLGSRRDMEELI++GRVSVNGE Sbjct: 182 GDEPGNGRSPA---AKVVRRDLTADDDAPKLHKVLAEAGLGSRRDMEELIISGRVSVNGE 238 Query: 344 PAHIGQRILPTDAVRINGKLIQRKVSKRPPRVLVYHKPAGEIVSHADPEGRNSVFDRLPT 403 PAHIGQRIL D VRINGKLIQR+VSK+PPRVLVYHKPAGEIVSH DP+GR SVF+RLP Sbjct: 239 PAHIGQRILAQDQVRINGKLIQRRVSKKPPRVLVYHKPAGEIVSHDDPDGRPSVFERLPN 298 Query: 404 MKAGKWLAVGRLDYNTEGLLLFTTSGDLANRLMHPRYNIEREYAVRTLGELEEGMRQKLL 463 MKAGKWLAVGRLD+NTEGLLLFTTSGDLANRLMHPRYNI+REYAVRTLGELEEGMRQKLL Sbjct: 299 MKAGKWLAVGRLDFNTEGLLLFTTSGDLANRLMHPRYNIDREYAVRTLGELEEGMRQKLL 358 Query: 464 SGVELDDGPAQFSRIADGGGEGVNKWYRVTIGEGRNREVRRMFEAVGLTVSRLIRTRYGA 523 +GVELDDG AQFSR+ADGGGEGVNKWYRVTIGEGRNREVRRMFEA+GLTVSRLIRTRYGA Sbjct: 359 AGVELDDGVAQFSRVADGGGEGVNKWYRVTIGEGRNREVRRMFEAIGLTVSRLIRTRYGA 418 Query: 524 MTLPQTLRRGRWEELEENAVRNLMAACGLEKQAGEGKSGNG---GHAGKGQGNGN----- 575 M LP L+RGRWEE++E++VR+L+ GLEK G+ + G H +G NGN Sbjct: 419 MVLPPNLKRGRWEEMDEHSVRDLLKISGLEKTVGKSEPSRGRSDEHDSEGGVNGNRIERA 478 Query: 576 --------GNGPRGNAMQ--------NKGPQKGRGGNYGNQGGNYGNQGGNYGNQGGGYG 619 NG R NA + GP +G GG + QG G QGG Sbjct: 479 PATARHGAPNGNRANAPEPGQWQGKGRSGPARGPGG-FAGQGQPRGPGAYPAQGQGGQGQ 537 Query: 620 GGNKGGQPKSRQPDPLQTALGFPDAGQ-RRNN 650 G + +SRQPDP+QTALGFP GQ RR+N Sbjct: 538 GRGAPAKARSRQPDPMQTALGFPGMGQPRRSN 569 >ref|ZP_04576065.1| ribosomal large subunit pseudouridine synthase B [Oxalobacter formigenes HOxBLS] gb|EEO27027.1| ribosomal large subunit pseudouridine synthase B [Oxalobacter formigenes HOxBLS] Length = 510 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 252/391 (64%), Positives = 286/391 (73%), Gaps = 33/391 (8%) Query: 263 RAAEPVDDIFSYVTSEAYDRDENP-------KGGARQPHQMRGKNGRRDLTAEDDAPKLH 315 R + +DD+F +VTS +DR + KGG Q K RR+LTAEDDAPKLH Sbjct: 122 RGEKELDDVFRFVTSSDFDRLNDTGSDAMTAKGGEAQKQ----KKARRELTAEDDAPKLH 177 Query: 316 KVLADAGLGSRRDMEELIVAGRVSVNGEPAHIGQRILPTDAVRINGKLIQRKVSKRPPRV 375 KVLADAGLGSRRDMEELIVAGRVSVNGEPAHIGQRILPTD VR+NGKLIQRK++K PRV Sbjct: 178 KVLADAGLGSRRDMEELIVAGRVSVNGEPAHIGQRILPTDQVRLNGKLIQRKIAKSLPRV 237 Query: 376 LVYHKPAGEIVSHADPEGRNSVFDRLPTMKAGKWLAVGRLDYNTEGLLLFTTSGDLANRL 435 L YHKPAGEIVS DPE R SVFDRLP +K KWLAVGRLD+NTEGLLLFT SGDLANRL Sbjct: 238 LTYHKPAGEIVSRDDPEKRPSVFDRLPLLKNSKWLAVGRLDFNTEGLLLFTNSGDLANRL 297 Query: 436 MHPRYNIEREYAVRTLGELEEGMRQKLLSGVELDDGPAQFSRIADGGGEGVNKWYRVTIG 495 MHPRYNIEREYAVRTLGELEEGMRQKLL+GV+L DG QFS+I DGGGEGVNKWYRVTIG Sbjct: 298 MHPRYNIEREYAVRTLGELEEGMRQKLLAGVDLGDGIGQFSKIVDGGGEGVNKWYRVTIG 357 Query: 496 EGRNREVRRMFEAVGLTVSRLIRTRYGAMTLPQTLRRGRWEELEENAVRNLMAACGLEKQ 555 EGRNREVRRMFEAVGLTVSRLIRTRYGA+ L Q+L+RGRW+ELEENAVRNL+ GL+ + Sbjct: 358 EGRNREVRRMFEAVGLTVSRLIRTRYGAVVLSQSLKRGRWDELEENAVRNLLRLSGLDNK 417 Query: 556 AGEGKSGNGGHAGKGQGNGNGNGPRGNAMQNKGPQKGRGGNYGNQGGNYGNQGGNYGNQG 615 + K G + + P+ ++ + Q QG + Sbjct: 418 --DDKKTQGKTRSRNASGQYPDFPKSQSLSIRELQL---------------QGQHQKKSP 460 Query: 616 GGYGGGNKGGQPKSRQPDPLQTALGFPDAGQ 646 GG + G P++RQPDPLQTA G+ GQ Sbjct: 461 GG-----QKGSPRNRQPDPLQTAFGYAGMGQ 486 >ref|ZP_04578255.1| ribosomal large subunit pseudouridine synthase B [Oxalobacter formigenes OXCC13] gb|EEO29228.1| ribosomal large subunit pseudouridine synthase B [Oxalobacter formigenes OXCC13] Length = 510 Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust. Identities = 244/376 (64%), Positives = 283/376 (75%), Gaps = 24/376 (6%) Query: 270 DIFSYVTSEAYDRDENPKGGARQPHQMRGKNGRRDLTAEDDAPKLHKVLADAGLGSRRDM 329 ++F +VTS+ YD+ N +G A + KN +R+L AEDDAPKLHKVLADAGLGSRRDM Sbjct: 128 NVFRFVTSDDYDK-INGEGDASADAPTKQKNAKRELRAEDDAPKLHKVLADAGLGSRRDM 186 Query: 330 EELIVAGRVSVNGEPAHIGQRILPTDAVRINGKLIQRKVSKRPPRVLVYHKPAGEIVSHA 389 EELI+AGRVSVNGEPAHIGQRILPTD VRINGKL+QRKV+K P+V++YHKPAGEIVS Sbjct: 187 EELIIAGRVSVNGEPAHIGQRILPTDQVRINGKLLQRKVTKSLPKVMLYHKPAGEIVSRD 246 Query: 390 DPEGRNSVFDRLPTMKAGKWLAVGRLDYNTEGLLLFTTSGDLANRLMHPRYNIEREYAVR 449 DPE R SVFD LP++K KWLAVGRLD+NTEGLLLFT +GDLANRLMHPRYNIEREYAVR Sbjct: 247 DPEKRASVFDNLPSLKNSKWLAVGRLDFNTEGLLLFTNNGDLANRLMHPRYNIEREYAVR 306 Query: 450 TLGELEEGMRQKLLSGVELDDGPAQFSRIADGGGEGVNKWYRVTIGEGRNREVRRMFEAV 509 TLGELEEGMRQKLL+GV+L DG QFS IADGGGEG+NKWYRVTIGEGRNREVRRMFE+V Sbjct: 307 TLGELEEGMRQKLLAGVDLGDGIGQFSSIADGGGEGINKWYRVTIGEGRNREVRRMFESV 366 Query: 510 GLTVSRLIRTRYGAMTLPQTLRRGRWEELEENAVRNLMAACGLE----KQAGEGKSGNGG 565 GLTVSRLIRTRYG +TLPQ L+RGRW+EL++NAVRNLM G+E K A E G Sbjct: 367 GLTVSRLIRTRYGVITLPQNLKRGRWDELDDNAVRNLMRLSGMEPKGDKSATETAKGRSA 426 Query: 566 HAGKGQGNGNGNGPRGNAMQNKGPQKGRGGNYGNQGGNYGNQGGNYGNQGGGYGGGNKGG 625 A K QG + R G++G ++ N ++ + G Sbjct: 427 GA-KRQG------------------QDRKGSFGRSETLSIHEFRNNDSRSKKGPTSAQKG 467 Query: 626 QPKSRQPDPLQTALGF 641 P+SRQPDPLQT G+ Sbjct: 468 APRSRQPDPLQTTFGY 483 >ref|YP_558192.1| ribosomal large subunit pseudouridine synthase B [Burkholderia xenovorans LB400] gb|ABE30140.1| ribosomal large subunit pseudouridine synthase B [Burkholderia xenovorans LB400] Length = 633 Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust. Identities = 232/352 (65%), Positives = 271/352 (76%), Gaps = 12/352 (3%) Query: 214 GAAPEQQPRGQFGKGHGQGGQNAQNGQGQQGKKNFDKNGKKPKAPQLGLRAAEPVDDIFS 273 GAA E PR GQ + + GQ ++G + ++ G + AP + A + DD+FS Sbjct: 127 GAAREGAPR------EGQRERQPREGQPREGGQRQNRRGGE--APAVATEAGQ--DDLFS 176 Query: 274 YVTSEAYDRDENPKGGARQPHQMRGK--NGRRDLTAEDDAPKLHKVLADAGLGSRRDMEE 331 YVTS A+D D + GG R P RGK +R L A+DDAPKLHKVLA+AG+GSRRDMEE Sbjct: 177 YVTSPAFDADNSATGGVRAPMLRRGKPVAPKRVLAADDDAPKLHKVLAEAGMGSRRDMEE 236 Query: 332 LIVAGRVSVNGEPAHIGQRILPTDAVRINGKLIQRKVSKRPPRVLVYHKPAGEIVSHADP 391 LIVAGRVSVNGEPAHIGQRI+PTD VRINGK ++RK++ +PPRVL+YHKP GEIVSHADP Sbjct: 237 LIVAGRVSVNGEPAHIGQRIMPTDQVRINGKPVKRKLASKPPRVLLYHKPTGEIVSHADP 296 Query: 392 EGRNSVFDRLPTMKAGKWLAVGRLDYNTEGLLLFTTSGDLANRLMHPRYNIEREYAVRTL 451 EGR SVFD+LP MK KWLAVGRLD+NTEGLL+ TTSGDLANR MHPRY++EREYAVR + Sbjct: 297 EGRPSVFDKLPPMKTAKWLAVGRLDFNTEGLLMLTTSGDLANRFMHPRYSVEREYAVRVV 356 Query: 452 GELEEGMRQKLLSGVELDDGPAQFSRIADGGGEGVNKWYRVTIGEGRNREVRRMFEAVGL 511 GEL EGMRQKLL GVELDDGPA F RI DGGGEG N WY V + EGRNREVRRMFEA GL Sbjct: 357 GELAEGMRQKLLHGVELDDGPANFLRIRDGGGEGTNHWYHVALAEGRNREVRRMFEAAGL 416 Query: 512 TVSRLIRTRYGAMTLPQTLRRGRWEELEENAVRNLMAACGLEKQAGEGKSGN 563 VSRLIRTR+G ++LP+ L+RGRWEELE+N VR LMA+ GL+ E S N Sbjct: 417 MVSRLIRTRHGPISLPKGLKRGRWEELEDNQVRALMASVGLKAPTEERGSRN 468 >ref|ZP_02887588.1| pseudouridine synthase [Burkholderia graminis C4D1M] gb|EDT06817.1| pseudouridine synthase [Burkholderia graminis C4D1M] Length = 639 Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust. Identities = 228/375 (60%), Positives = 265/375 (70%), Gaps = 63/375 (16%) Query: 269 DDIFSYVTSEAYDRDENPKGGARQPHQMRGKNG--RRDLTAEDDAPKLHKVLADAGLGSR 326 DD+FSYVTS A+D D + GG R P RGK +R L+A+DDAPKLHKVLA+AG+GSR Sbjct: 178 DDLFSYVTSPAFDADNSTTGGVRAPMLRRGKPAAPKRVLSADDDAPKLHKVLAEAGMGSR 237 Query: 327 RDMEELIVAGRVSVNGEPAHIGQRILPTDAVRINGKLIQRKVSKRPPRVLVYHKPAGEIV 386 RDMEELIVAGRVSVNGEPAHIGQRI+PTD VRINGK ++RK++ +PPRVL+YHKP GEIV Sbjct: 238 RDMEELIVAGRVSVNGEPAHIGQRIMPTDQVRINGKPVKRKLANKPPRVLLYHKPTGEIV 297 Query: 387 SHADPEGRNSVFDRLPTMKAGKWLAVGRLDYNTEGLLLFTTSGDLANRLMHPRYNIEREY 446 SHADPEGR SVFD+LP MK KWLAVGRLD+NTEGLL+ TTSGDLANR MHPRY++EREY Sbjct: 298 SHADPEGRPSVFDKLPPMKTAKWLAVGRLDFNTEGLLMLTTSGDLANRFMHPRYSVEREY 357 Query: 447 AVRTLGELEEGMRQKLLSGVELDDGPAQFSRIADGGGEGVNKWYRVTIGEGRNREVRRMF 506 AVR +GEL EGMRQKLL+GVELDDGPA F RI DGGGEG N WY V + EGRNREVRRMF Sbjct: 358 AVRVVGELAEGMRQKLLNGVELDDGPANFLRIRDGGGEGTNHWYHVALAEGRNREVRRMF 417 Query: 507 EAVGLTVSRLIRTRYGAMTLPQTLRRGRWEELEENAVRNLMAACGLEKQAGEGKSGNGGH 566 EA GL VSRLIRTR+G ++LP+ L+RGRWEELE+N VR LMA+ GL Sbjct: 418 EAAGLMVSRLIRTRHGPISLPKGLKRGRWEELEDNQVRALMASVGL-------------- 463 Query: 567 AGKGQGNGNGNGPRGNAMQNKGPQKGRGGNYGNQGGNYGNQGGNYGNQGGGYGGGNKGGQ 626 K P + RGG + Sbjct: 464 --------------------KAPSEERGG---------------------------RNAA 476 Query: 627 PKSRQPDPLQTALGF 641 P+ +QPDP+QT++GF Sbjct: 477 PERKQPDPMQTSMGF 491 >ref|ZP_06841598.1| pseudouridine synthase [Burkholderia sp. Ch1-1] gb|EFG70763.1| pseudouridine synthase [Burkholderia sp. Ch1-1] Length = 626 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 239/377 (63%), Positives = 278/377 (73%), Gaps = 34/377 (9%) Query: 183 GVRGPRALRNNRAAQRAAASAEG----GVPGKADNGAAPEQQPRGQFGKGHGQGGQNAQN 238 G +G + RN A+R A EG G PG+ E+QPR +GGQ QN Sbjct: 105 GAKGQGSRRNAGGARREGAPREGAAREGAPGEGQR----ERQPR--------EGGQR-QN 151 Query: 239 GQGQQGKKNFDKNGKKPKAPQLGLRAAEPVDDIFSYVTSEAYDRDENPKGGARQPHQMRG 298 +G + AP + A + DD+FSYVTS A+D D + GG R P RG Sbjct: 152 RRGGE-------------APAVATEAGQ--DDLFSYVTSPAFDADNSATGGVRAPMLRRG 196 Query: 299 KNG--RRDLTAEDDAPKLHKVLADAGLGSRRDMEELIVAGRVSVNGEPAHIGQRILPTDA 356 K +R L A+DDAPKLHKVLA+AG+GSRRDMEELIVAGRVSVNGEPAHIGQRI+PTD Sbjct: 197 KPAAPKRVLAADDDAPKLHKVLAEAGMGSRRDMEELIVAGRVSVNGEPAHIGQRIMPTDQ 256 Query: 357 VRINGKLIQRKVSKRPPRVLVYHKPAGEIVSHADPEGRNSVFDRLPTMKAGKWLAVGRLD 416 VRINGK ++RK++ +PPRVL+YHKP GEIVSHADPEGR SVFD+LP MK KWLAVGRLD Sbjct: 257 VRINGKPVKRKLANKPPRVLLYHKPTGEIVSHADPEGRPSVFDKLPPMKTAKWLAVGRLD 316 Query: 417 YNTEGLLLFTTSGDLANRLMHPRYNIEREYAVRTLGELEEGMRQKLLSGVELDDGPAQFS 476 +NTEGLL+ TTSGDLANR MHPRY++EREYAVR +GEL EGMRQKLL GVELDDGPA F Sbjct: 317 FNTEGLLMLTTSGDLANRFMHPRYSVEREYAVRVVGELAEGMRQKLLHGVELDDGPANFL 376 Query: 477 RIADGGGEGVNKWYRVTIGEGRNREVRRMFEAVGLTVSRLIRTRYGAMTLPQTLRRGRWE 536 RI DGGGEG N WY V + EGRNREVRRMFEA GL VSRLIRTR+G ++LP+ L+RGRWE Sbjct: 377 RIRDGGGEGTNHWYHVALAEGRNREVRRMFEAAGLMVSRLIRTRHGPISLPKGLKRGRWE 436 Query: 537 ELEENAVRNLMAACGLE 553 ELE+N VR LMA+ GL+ Sbjct: 437 ELEDNQVRALMASVGLK 453