BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0020.p (164 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776992.1| hypothetical protein Hsero_3606 [Herbaspiril... 327 5e-88 ref|YP_004754092.1| hypothetical protein CFU_3445 [Collimonas fu... 241 3e-62 ref|ZP_08276236.1| clustered with transcription termination prot... 233 1e-59 ref|YP_001354187.1| hypothetical protein mma_2497 [Janthinobacte... 231 3e-59 sp|A6T0Z0.2|RIMP_JANMA RecName: Full=Ribosome maturation factor ... 230 4e-59 ref|YP_001100687.1| hypothetical protein HEAR2435 [Herminiimonas... 229 1e-58 sp|A4G7S9.2|RIMP_HERAR RecName: Full=Ribosome maturation factor ... 228 2e-58 ref|ZP_04579226.1| conserved hypothetical protein [Oxalobacter f... 201 4e-50 ref|ZP_04577094.1| conserved hypothetical protein [Oxalobacter f... 198 2e-49 ref|YP_333312.1| hypothetical protein BURPS1710b_1913 [Burkholde... 197 4e-49 >ref|YP_003776992.1| hypothetical protein Hsero_3606 [Herbaspirillum seropedicae SmR1] gb|ADJ65084.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 164 Score = 327 bits (837), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 163/164 (99%), Positives = 164/164 (100%) Query: 1 LQLLELIESTLSGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLL 60 +QLLELIESTLSGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLL Sbjct: 1 MQLLELIESTLSGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLL 60 Query: 61 HVFTVENVLYERLEVSSPGLDRPLKKFSDFVRFVDCEAVIKLRVPLPGTSNRKTYEGVLR 120 HVFTVENVLYERLEVSSPGLDRPLKKFSDFVRFVDCEAVIKLRVPLPGTSNRKTYEGVLR Sbjct: 61 HVFTVENVLYERLEVSSPGLDRPLKKFSDFVRFVDCEAVIKLRVPLPGTSNRKTYEGVLR 120 Query: 121 EPEGEELVLEFEANDGSAAVLNFTLADVDKAHLVPQVDFRSRKG 164 EPEGEELVLEFEANDGSAAVLNFTLADVDKAHLVPQVDFRSRKG Sbjct: 121 EPEGEELVLEFEANDGSAAVLNFTLADVDKAHLVPQVDFRSRKG 164 >ref|YP_004754092.1| hypothetical protein CFU_3445 [Collimonas fungivorans Ter331] gb|AEK63269.1| hypothetical protein CFU_3445 [Collimonas fungivorans Ter331] Length = 161 Score = 241 bits (614), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 118/164 (71%), Positives = 140/164 (85%), Gaps = 3/164 (1%) Query: 1 LQLLELIESTLSGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLL 60 +QLLELIE+T+ G+GYELVEFEKA RG++RV+IDF PE E ITVEDCEK THQLL Sbjct: 1 MQLLELIETTVVGMGYELVEFEKAARGVLRVYIDFT--PENAEQGQITVEDCEKVTHQLL 58 Query: 61 HVFTVENVLYERLEVSSPGLDRPLKKFSDFVRFVDCEAVIKLRVPLPGTSNRKTYEGVLR 120 HV TVENV+YERLEVSSPGLDRPLKK +D+VRF EA++KLRVP+PG ++RK+++GVL Sbjct: 59 HVLTVENVVYERLEVSSPGLDRPLKKLADYVRFAGKEAIVKLRVPMPGAAHRKSFQGVLG 118 Query: 121 EPEGEELVLEFEANDGSAAVLNFTLADVDKAHLVPQVDFRSRKG 164 EP+GE L +EFE DGS A+L+FTLADVDKAHLVPQVDFRSRK Sbjct: 119 EPDGENLKIEFETKDGS-ALLDFTLADVDKAHLVPQVDFRSRKA 161 >ref|ZP_08276236.1| clustered with transcription termination protein NusA [Oxalobacteraceae bacterium IMCC9480] gb|EGF30294.1| clustered with transcription termination protein NusA [Oxalobacteraceae bacterium IMCC9480] Length = 161 Score = 233 bits (593), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 111/164 (67%), Positives = 137/164 (83%), Gaps = 3/164 (1%) Query: 1 LQLLELIESTLSGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLL 60 +QLLELIE T+ G+ YELV+FE+A RGL+RV+IDFP PE E ITVEDCEK THQLL Sbjct: 1 MQLLELIEKTVVGMEYELVDFEQAARGLLRVYIDFP--PEQAERGMITVEDCEKVTHQLL 58 Query: 61 HVFTVENVLYERLEVSSPGLDRPLKKFSDFVRFVDCEAVIKLRVPLPGTSNRKTYEGVLR 120 HV TVEN +YERLEVSSPGLDRPLKK +D++RF EA++KLR+P+PG +NRK+++G+L Sbjct: 59 HVLTVENAVYERLEVSSPGLDRPLKKLADYLRFAGMEAIVKLRMPMPGAANRKSFQGILH 118 Query: 121 EPEGEELVLEFEANDGSAAVLNFTLADVDKAHLVPQVDFRSRKG 164 PEG+++ LEFE +GS A+L FTLADVDKAHLVP+VDFRSRK Sbjct: 119 APEGDQIKLEFEGKEGS-AMLEFTLADVDKAHLVPKVDFRSRKA 161 >ref|YP_001354187.1| hypothetical protein mma_2497 [Janthinobacterium sp. Marseille] gb|ABR90282.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 170 Score = 231 bits (589), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 115/164 (70%), Positives = 132/164 (80%), Gaps = 3/164 (1%) Query: 1 LQLLELIESTLSGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLL 60 LQL LIE T+ G+GYELV FE+A RGLVRVFIDF PE + +ITVEDCEK THQLL Sbjct: 10 LQLSALIEKTVVGMGYELVNFEQAARGLVRVFIDF--TPEDADKGAITVEDCEKVTHQLL 67 Query: 61 HVFTVENVLYERLEVSSPGLDRPLKKFSDFVRFVDCEAVIKLRVPLPGTSNRKTYEGVLR 120 HV TVEN YERLEVSSPGLDRPLKK SD+VRF EA++KLR+P+P +NRK+++G+L+ Sbjct: 68 HVLTVENANYERLEVSSPGLDRPLKKLSDYVRFAGAEALVKLRMPMPNAANRKSFQGILQ 127 Query: 121 EPEGEELVLEFEANDGSAAVLNFTLADVDKAHLVPQVDFRSRKG 164 EP GE L LEFE NDG A L FTLADVDKAHLVPQV+FRSRK Sbjct: 128 EPVGETLALEFEGNDGPAK-LEFTLADVDKAHLVPQVNFRSRKA 170 >sp|A6T0Z0.2|RIMP_JANMA RecName: Full=Ribosome maturation factor rimP Length = 161 Score = 230 bits (587), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 114/164 (69%), Positives = 132/164 (80%), Gaps = 3/164 (1%) Query: 1 LQLLELIESTLSGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLL 60 +QL LIE T+ G+GYELV FE+A RGLVRVFIDF PE + +ITVEDCEK THQLL Sbjct: 1 MQLSALIEKTVVGMGYELVNFEQAARGLVRVFIDF--TPEDADKGAITVEDCEKVTHQLL 58 Query: 61 HVFTVENVLYERLEVSSPGLDRPLKKFSDFVRFVDCEAVIKLRVPLPGTSNRKTYEGVLR 120 HV TVEN YERLEVSSPGLDRPLKK SD+VRF EA++KLR+P+P +NRK+++G+L+ Sbjct: 59 HVLTVENANYERLEVSSPGLDRPLKKLSDYVRFAGAEALVKLRMPMPNAANRKSFQGILQ 118 Query: 121 EPEGEELVLEFEANDGSAAVLNFTLADVDKAHLVPQVDFRSRKG 164 EP GE L LEFE NDG A L FTLADVDKAHLVPQV+FRSRK Sbjct: 119 EPVGETLALEFEGNDGPAK-LEFTLADVDKAHLVPQVNFRSRKA 161 >ref|YP_001100687.1| hypothetical protein HEAR2435 [Herminiimonas arsenicoxydans] emb|CAL62566.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans] Length = 172 Score = 229 bits (584), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 114/164 (69%), Positives = 132/164 (80%), Gaps = 3/164 (1%) Query: 1 LQLLELIESTLSGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLL 60 LQL LIE T+ G+GYELV FE+A RGLVRV+IDF PE + SITVEDCEK THQLL Sbjct: 12 LQLSALIEKTVVGMGYELVNFEQAARGLVRVYIDF--TPEDADKGSITVEDCEKVTHQLL 69 Query: 61 HVFTVENVLYERLEVSSPGLDRPLKKFSDFVRFVDCEAVIKLRVPLPGTSNRKTYEGVLR 120 HV TVEN YERLEVSSPGLDRPLKK SD+VRF EA++KLR+P+P +NRK+++G+L+ Sbjct: 70 HVLTVENANYERLEVSSPGLDRPLKKLSDYVRFAGAEALVKLRLPMPNAANRKSFQGILQ 129 Query: 121 EPEGEELVLEFEANDGSAAVLNFTLADVDKAHLVPQVDFRSRKG 164 EP GE L LEFE N+G A L FTLADVDKAHLVPQV+FRSRK Sbjct: 130 EPVGETLALEFEGNEGPAK-LEFTLADVDKAHLVPQVNFRSRKA 172 >sp|A4G7S9.2|RIMP_HERAR RecName: Full=Ribosome maturation factor rimP Length = 161 Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 113/164 (68%), Positives = 132/164 (80%), Gaps = 3/164 (1%) Query: 1 LQLLELIESTLSGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLL 60 +QL LIE T+ G+GYELV FE+A RGLVRV+IDF PE + SITVEDCEK THQLL Sbjct: 1 MQLSALIEKTVVGMGYELVNFEQAARGLVRVYIDF--TPEDADKGSITVEDCEKVTHQLL 58 Query: 61 HVFTVENVLYERLEVSSPGLDRPLKKFSDFVRFVDCEAVIKLRVPLPGTSNRKTYEGVLR 120 HV TVEN YERLEVSSPGLDRPLKK SD+VRF EA++KLR+P+P +NRK+++G+L+ Sbjct: 59 HVLTVENANYERLEVSSPGLDRPLKKLSDYVRFAGAEALVKLRLPMPNAANRKSFQGILQ 118 Query: 121 EPEGEELVLEFEANDGSAAVLNFTLADVDKAHLVPQVDFRSRKG 164 EP GE L LEFE N+G A L FTLADVDKAHLVPQV+FRSRK Sbjct: 119 EPVGETLALEFEGNEGPAK-LEFTLADVDKAHLVPQVNFRSRKA 161 >ref|ZP_04579226.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] gb|EEO30199.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] Length = 162 Score = 201 bits (510), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 102/163 (62%), Positives = 127/163 (77%), Gaps = 3/163 (1%) Query: 3 LLELIESTLSGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLLHV 62 L ELIE T+SG GY+LV+ E+A L+RV+IDF PE +I++EDCEK + QL HV Sbjct: 2 LQELIEKTVSGCGYDLVDVERAQGNLLRVYIDFK--PEDAGRGNISLEDCEKVSRQLSHV 59 Query: 63 FTVENVLYERLEVSSPGLDRPLKKFSDFVRFVDCEAVIKLRVPLPGTSNRKTYEGVLREP 122 VE+V Y+RLEVSSPGLDRPLKKF+DFVRFV EA +KLR P+ G SNRKT++G+L P Sbjct: 60 LMVEDVDYDRLEVSSPGLDRPLKKFADFVRFVGMEAHVKLRKPVTGMSNRKTFQGILLAP 119 Query: 123 EGEELVLEFEAND-GSAAVLNFTLADVDKAHLVPQVDFRSRKG 164 EG+EL LEFE D + +VL+FT+AD+DKAHLVPQV+FRSRK Sbjct: 120 EGDELALEFEGKDENNNSVLHFTIADIDKAHLVPQVNFRSRKA 162 >ref|ZP_04577094.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] gb|EEO28056.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] Length = 182 Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 98/163 (60%), Positives = 127/163 (77%), Gaps = 3/163 (1%) Query: 3 LLELIESTLSGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLLHV 62 L EL+E T++G GY+LV+ E+A G++RV+IDF PEA +ITV+DCEK + QL HV Sbjct: 22 LQELVEKTVNGCGYDLVDLERASGGILRVYIDFL--PEASSRGNITVDDCEKVSRQLSHV 79 Query: 63 FTVENVLYERLEVSSPGLDRPLKKFSDFVRFVDCEAVIKLRVPLPGTSNRKTYEGVLREP 122 TVE+V Y+RLEVSSPGLDRPLKK+ DFVRF EA ++LR P+ G NRK+++G+L P Sbjct: 80 LTVEDVDYDRLEVSSPGLDRPLKKWQDFVRFAGMEAHVRLRKPVTGMGNRKSFQGILLPP 139 Query: 123 EGEELVLEFEANDG-SAAVLNFTLADVDKAHLVPQVDFRSRKG 164 EG+EL LEFE ND S++VL+FT+ D+DKA LVPQV+FRSRK Sbjct: 140 EGDELALEFEGNDSESSSVLHFTITDIDKARLVPQVNFRSRKA 182 >ref|YP_333312.1| hypothetical protein BURPS1710b_1913 [Burkholderia pseudomallei 1710b] ref|ZP_02498259.1| hypothetical protein Bpse112_11783 [Burkholderia pseudomallei 112] ref|ZP_04951016.1| conserved hypothetical protein [Burkholderia pseudomallei 1710a] sp|Q3JSZ1.1|RIMP_BURP1 RecName: Full=Ribosome maturation factor rimP gb|ABA48576.1| conserved hypothetical protein [Burkholderia pseudomallei 1710b] gb|EET08035.1| conserved hypothetical protein [Burkholderia pseudomallei 1710a] Length = 153 Score = 197 bits (502), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 101/163 (61%), Positives = 119/163 (73%), Gaps = 11/163 (6%) Query: 1 LQLLELIESTLSGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLL 60 +QL ELIE+T++GLGYELV+ E+ RG+V V+ID P IT++DCEK T QL Sbjct: 1 MQLTELIETTVTGLGYELVDLERTGRGMVCVYIDQPA--------GITIDDCEKVTRQLQ 52 Query: 61 HVFTVENVLYERLEVSSPGLDRPLKKFSDFVRFVDCEAVIKLRVPLPGTSNRKTYEGVLR 120 HV TVEN+ YERLEVSSPGLDRPLKK +DF RF EAVI L+ PL G RKTY G+L Sbjct: 53 HVLTVENIDYERLEVSSPGLDRPLKKLADFTRFAGSEAVITLKKPLDG---RKTYRGILH 109 Query: 121 EPEGEELVLEFEANDGSAAVLNFTLADVDKAHLVPQVDFRSRK 163 P GE + LEFE G AA+L+FTLADVDKA L+P VDFRSRK Sbjct: 110 APNGETIGLEFERKKGEAAMLDFTLADVDKARLIPHVDFRSRK 152