BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0018.p (382 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776991.1| transcription elongation factor protein [Her... 719 0.0 ref|YP_004754091.1| transcription termination protein NusA [Coll... 681 0.0 ref|YP_001354186.1| N utilization substance protein A [Janthinob... 671 0.0 ref|YP_001100686.1| transcription pausing; L factor [Herminiimon... 665 0.0 ref|ZP_08276237.1| Transcription termination protein NusA [Oxalo... 662 0.0 ref|ZP_04577093.1| transcription pausing [Oxalobacter formigenes... 641 0.0 ref|ZP_04579225.1| transcription elongation protein [Oxalobacter... 629 e-178 gb|EGW60656.1| NusA antitermination factor [Dechlorosoma suillum... 514 e-143 ref|YP_003168175.1| transcription elongation factor NusA [Candid... 498 e-139 ref|YP_412552.1| transcription elongation factor NusA [Nitrososp... 489 e-136 >ref|YP_003776991.1| transcription elongation factor protein [Herbaspirillum seropedicae SmR1] gb|ADJ65083.1| transcription elongation factor protein [Herbaspirillum seropedicae SmR1] Length = 519 Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/382 (99%), Positives = 379/382 (99%), Gaps = 3/382 (0%) Query: 1 VTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVILS 60 VTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVILS Sbjct: 141 VTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVILS 200 Query: 61 RTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR 120 RTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR Sbjct: 201 RTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR 260 Query: 121 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIAI 180 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIAI Sbjct: 261 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIAI 320 Query: 181 GRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEGF 240 GRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEGF Sbjct: 321 GRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEGF 380 Query: 241 STLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGMEEELINFEGL 300 STLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGMEEELINFEGL Sbjct: 381 STLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGMEEELINFEGL 440 Query: 301 DRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERALRARQLIENAFEDVTDDEMKLI 360 DRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSE RARQLIENAFEDVTDDEMKLI Sbjct: 441 DRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSE---RARQLIENAFEDVTDDEMKLI 497 Query: 361 DSKYDERAKALQAKAWSAVEGR 382 DSKYDERAKALQAKAWSAVEGR Sbjct: 498 DSKYDERAKALQAKAWSAVEGR 519 >ref|YP_004754091.1| transcription termination protein NusA [Collimonas fungivorans Ter331] gb|AEK63268.1| Transcription termination protein NusA [Collimonas fungivorans Ter331] Length = 519 Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/382 (89%), Positives = 361/382 (94%), Gaps = 3/382 (0%) Query: 1 VTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVILS 60 VTGTIKRMERGDAI+ESGKIEARLPRDQ IPKENLRIGDRVRA+ILR+DR+ARGPQVILS Sbjct: 141 VTGTIKRMERGDAIVESGKIEARLPRDQTIPKENLRIGDRVRAFILRIDRNARGPQVILS 200 Query: 61 RTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR 120 RTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAV+TADKRIDPIGTCVGMRGSR Sbjct: 201 RTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVFTADKRIDPIGTCVGMRGSR 260 Query: 121 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIAI 180 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANV+SIVVDEEKHAMDVVVDEENLAIAI Sbjct: 261 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVVDEEKHAMDVVVDEENLAIAI 320 Query: 181 GRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEGF 240 GRGGQNVRLAAELT WQINIMTAEESADKSA ETA IR LFMEKLDVDQEVADILVEEGF Sbjct: 321 GRGGQNVRLAAELTGWQINIMTAEESADKSAVETAAIRALFMEKLDVDQEVADILVEEGF 380 Query: 241 STLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGMEEELINFEGL 300 ++LEEIAYVPI EMLEI+SFDE+TVNELRNRARDALVTEAIASEEGLEGME+ L+NFEG+ Sbjct: 381 ASLEEIAYVPITEMLEIDSFDEDTVNELRNRARDALVTEAIASEEGLEGMEDALVNFEGM 440 Query: 301 DRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERALRARQLIENAFEDVTDDEMKLI 360 DRV AGKLGLAGVKTL AFA LAYDEFGAILAL ++ RAR LIE F+DVTDDEMKLI Sbjct: 441 DRVTAGKLGLAGVKTLAAFAALAYDEFGAILALSAD---RARHLIEQEFKDVTDDEMKLI 497 Query: 361 DSKYDERAKALQAKAWSAVEGR 382 D+KYD+ AKALQAKAW+ E + Sbjct: 498 DAKYDDHAKALQAKAWNTAEAK 519 >ref|YP_001354186.1| N utilization substance protein A [Janthinobacterium sp. Marseille] gb|ABR88645.1| N utilization substance protein A [Janthinobacterium sp. Marseille] Length = 519 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/382 (87%), Positives = 361/382 (94%), Gaps = 3/382 (0%) Query: 1 VTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVILS 60 VTGTIKRMERGDAI+ESG+IEARLPRDQ IPKENLRIGDRVRAYILR+DR+ARGPQVILS Sbjct: 141 VTGTIKRMERGDAIVESGRIEARLPRDQTIPKENLRIGDRVRAYILRIDRNARGPQVILS 200 Query: 61 RTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR 120 RTAPEFIMKLFELEVPEIEQG LEIKSAARD GVRAKIAV+T+DKRIDPIGTCVGMRGSR Sbjct: 201 RTAPEFIMKLFELEVPEIEQGLLEIKSAARDAGVRAKIAVFTSDKRIDPIGTCVGMRGSR 260 Query: 121 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIAI 180 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANV+SIVVDEEKHAMDVVVDEENLAIAI Sbjct: 261 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVVDEEKHAMDVVVDEENLAIAI 320 Query: 181 GRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEGF 240 GRGGQNVRLA+ELT WQINIMTAEESADKS ETA IRTLFMEKLDVDQEVADILV+EGF Sbjct: 321 GRGGQNVRLASELTGWQINIMTAEESADKSQLETAAIRTLFMEKLDVDQEVADILVDEGF 380 Query: 241 STLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGMEEELINFEGL 300 ++LEEIAYVPI+EML+IESFDE+TVNELRNRARDALVTEAIASEEGLEGMEE L N EG+ Sbjct: 381 ASLEEIAYVPISEMLDIESFDEDTVNELRNRARDALVTEAIASEEGLEGMEEALANLEGM 440 Query: 301 DRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERALRARQLIENAFEDVTDDEMKLI 360 DRV+AGKLGLAG+KTL AF+ LAYDEFGAILALP++ RARQLIE+ F+DVTD+EMKLI Sbjct: 441 DRVMAGKLGLAGIKTLAAFSALAYDEFGAILALPAD---RARQLIEDEFKDVTDEEMKLI 497 Query: 361 DSKYDERAKALQAKAWSAVEGR 382 D+KYD+ AKALQAK WS E + Sbjct: 498 DAKYDDHAKALQAKVWSLAEAK 519 >ref|YP_001100686.1| transcription pausing; L factor [Herminiimonas arsenicoxydans] emb|CAL62565.1| Transcription elongation protein nusA (N utilization substance protein A) (L factor) [Herminiimonas arsenicoxydans] Length = 519 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/382 (87%), Positives = 358/382 (93%), Gaps = 3/382 (0%) Query: 1 VTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVILS 60 VTGTIKRMERGDAI+ESG+IEARLPRDQ IPKENLRIGDRVRAYILR+DR+ARGPQVILS Sbjct: 141 VTGTIKRMERGDAIVESGRIEARLPRDQTIPKENLRIGDRVRAYILRIDRNARGPQVILS 200 Query: 61 RTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR 120 RTAPEFIMKLFELEVPEIEQG LEIKSAARD GVRAKIAV+T+DKRIDPIGTCVGMRGSR Sbjct: 201 RTAPEFIMKLFELEVPEIEQGLLEIKSAARDAGVRAKIAVFTSDKRIDPIGTCVGMRGSR 260 Query: 121 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIAI 180 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANV+SIVVDEEKHAMDVVVDEENLAIAI Sbjct: 261 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVVDEEKHAMDVVVDEENLAIAI 320 Query: 181 GRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEGF 240 GRGGQNVRLA+ELT WQINIMTAEESADKS ETA R LFMEKLDVDQEVADILV+EGF Sbjct: 321 GRGGQNVRLASELTGWQINIMTAEESADKSQLETAATRILFMEKLDVDQEVADILVDEGF 380 Query: 241 STLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGMEEELINFEGL 300 ++LEEIAYVPI EML+IESFDE+TVNELRNRARDALVTEAIASEEG+EGM+E L N EG+ Sbjct: 381 ASLEEIAYVPIGEMLDIESFDEDTVNELRNRARDALVTEAIASEEGMEGMDEALANLEGM 440 Query: 301 DRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERALRARQLIENAFEDVTDDEMKLI 360 DR++AGKLGLAGVKTL AFAGLAYDEFGAILALP++ RAR LIEN F+DVTD+EMKLI Sbjct: 441 DRIVAGKLGLAGVKTLDAFAGLAYDEFGAILALPTD---RARHLIENEFKDVTDEEMKLI 497 Query: 361 DSKYDERAKALQAKAWSAVEGR 382 D+KYD+ AKALQAK WS E + Sbjct: 498 DAKYDDHAKALQAKVWSLAEAK 519 >ref|ZP_08276237.1| Transcription termination protein NusA [Oxalobacteraceae bacterium IMCC9480] gb|EGF30295.1| Transcription termination protein NusA [Oxalobacteraceae bacterium IMCC9480] Length = 519 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/382 (86%), Positives = 358/382 (93%), Gaps = 3/382 (0%) Query: 1 VTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVILS 60 VTGTIKRMERGDAI+ESGKIEARLPRDQMIPKENLRIGDRVRA+ILRVDR+ARGPQVILS Sbjct: 141 VTGTIKRMERGDAIVESGKIEARLPRDQMIPKENLRIGDRVRAFILRVDRNARGPQVILS 200 Query: 61 RTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR 120 RT+PEFIMKLFELEVPEIEQG L IKSAARD GVRAKIAV+T+DKRIDPIGTCVGMRGSR Sbjct: 201 RTSPEFIMKLFELEVPEIEQGLLIIKSAARDAGVRAKIAVFTSDKRIDPIGTCVGMRGSR 260 Query: 121 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIAI 180 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANV+SIVVDEEKHAMDVVVDEENLAIAI Sbjct: 261 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVVDEEKHAMDVVVDEENLAIAI 320 Query: 181 GRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEGF 240 GRGGQNVRLAAELT WQINIMTAEESA KSA ETA IR LFM KLDVDQEVADILV+EGF Sbjct: 321 GRGGQNVRLAAELTNWQINIMTAEESASKSANETAAIRALFMAKLDVDQEVADILVDEGF 380 Query: 241 STLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGMEEELINFEGL 300 ++LEEIAYVPI+EMLEIESFDE+TVNELR RARDALVTEAIASEEGLEGM++ L EG+ Sbjct: 381 ASLEEIAYVPISEMLEIESFDEDTVNELRTRARDALVTEAIASEEGLEGMDDALATMEGM 440 Query: 301 DRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERALRARQLIENAFEDVTDDEMKLI 360 DRV AGKLGLAGVKTL AF+GLAYDEFGAILALP++ RARQLI++ F+DVTD+EMKLI Sbjct: 441 DRVTAGKLGLAGVKTLAAFSGLAYDEFGAILALPAD---RARQLIDDEFKDVTDEEMKLI 497 Query: 361 DSKYDERAKALQAKAWSAVEGR 382 D+KYD+R KALQAKAW+ E + Sbjct: 498 DAKYDDRVKALQAKAWNLAEAK 519 >ref|ZP_04577093.1| transcription pausing [Oxalobacter formigenes HOxBLS] gb|EEO28055.1| transcription pausing [Oxalobacter formigenes HOxBLS] Length = 518 Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/380 (84%), Positives = 349/380 (91%), Gaps = 3/380 (0%) Query: 1 VTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVILS 60 VTGT+KRMERGDAI+ESGK+EARLPR+QMIPKENLRIGDRVRAYILRV+R ARGPQVILS Sbjct: 141 VTGTVKRMERGDAIVESGKVEARLPREQMIPKENLRIGDRVRAYILRVERGARGPQVILS 200 Query: 61 RTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR 120 RTAPEFI+KLFELEVPEIEQG LEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR Sbjct: 201 RTAPEFIVKLFELEVPEIEQGLLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR 260 Query: 121 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIAI 180 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANV+SIVVDE+KHAMDV+VDEENLAIAI Sbjct: 261 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVVDEDKHAMDVIVDEENLAIAI 320 Query: 181 GRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEGF 240 GR GQNVRLA ELT W+INIMTAEESADK+A E A ++ LFMEKLDVD EVADIL+EEGF Sbjct: 321 GRSGQNVRLATELTGWKINIMTAEESADKTALEKAELQKLFMEKLDVDSEVADILIEEGF 380 Query: 241 STLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGMEEELINFEGL 300 ++LEEIAYVPINEML+IE+FDEETVNE+R RARDAL+TEAI SEEG+ GMEE L EG+ Sbjct: 381 TSLEEIAYVPINEMLDIEAFDEETVNEIRQRARDALITEAIVSEEGMAGMEEALSGLEGM 440 Query: 301 DRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERALRARQLIENAFEDVTDDEMKLI 360 R +AGKLGLAGVKTL FAGLAYDEFGAILALP E RARQL+EN F DVTD+EMKLI Sbjct: 441 SRSVAGKLGLAGVKTLERFAGLAYDEFGAILALPVE---RARQLLENEFADVTDEEMKLI 497 Query: 361 DSKYDERAKALQAKAWSAVE 380 D+KYD+ AK LQA+AW +E Sbjct: 498 DAKYDDEAKELQARAWKLME 517 >ref|ZP_04579225.1| transcription elongation protein [Oxalobacter formigenes OXCC13] gb|EEO30198.1| transcription elongation protein [Oxalobacter formigenes OXCC13] Length = 519 Score = 629 bits (1621), Expect = e-178, Method: Compositional matrix adjust. Identities = 323/382 (84%), Positives = 352/382 (92%), Gaps = 3/382 (0%) Query: 1 VTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVILS 60 VTGT+KRMERGDAI+ESGK+EARLPR+QMIPKENLR+GDRVRAYILRV+R ARGPQVILS Sbjct: 141 VTGTVKRMERGDAIVESGKVEARLPREQMIPKENLRVGDRVRAYILRVERGARGPQVILS 200 Query: 61 RTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR 120 RTAPEFI+KLFELEVPEIEQG LEIKSAARDPGVRAKIAV+T+DKRIDPIGTCVGMRGSR Sbjct: 201 RTAPEFIVKLFELEVPEIEQGLLEIKSAARDPGVRAKIAVFTSDKRIDPIGTCVGMRGSR 260 Query: 121 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIAI 180 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDE+KHAMDV+VDEENLAIAI Sbjct: 261 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEDKHAMDVIVDEENLAIAI 320 Query: 181 GRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEGF 240 GR GQNVRLA ELT W+INIMTAEESADKSA E A ++ LFME+LDVDQEVADIL+EEGF Sbjct: 321 GRSGQNVRLATELTGWKINIMTAEESADKSALEKAELQKLFMERLDVDQEVADILIEEGF 380 Query: 241 STLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGMEEELINFEGL 300 + LEEIAYVPI EMLEIE+FDE+TVNE+R RARDAL+TEAIASEEG+ GMEEEL+N EG+ Sbjct: 381 TALEEIAYVPIGEMLEIEAFDEDTVNEIRQRARDALITEAIASEEGMAGMEEELVNLEGM 440 Query: 301 DRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERALRARQLIENAFEDVTDDEMKLI 360 DR +AGKLGLAGVKTL FA LAYDEFGAILALP E RARQL+EN F DVTDDEMKLI Sbjct: 441 DRQVAGKLGLAGVKTLQRFAELAYDEFGAILALPVE---RARQLLENEFADVTDDEMKLI 497 Query: 361 DSKYDERAKALQAKAWSAVEGR 382 D+KYD+ AK LQA AW VE + Sbjct: 498 DAKYDDEAKELQANAWKLVESK 519 >gb|EGW60656.1| NusA antitermination factor [Dechlorosoma suillum PS] Length = 490 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 255/348 (73%), Positives = 299/348 (85%), Gaps = 3/348 (0%) Query: 1 VTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVILS 60 V+GTIKRMERG+AIIE+GKIEA LPRDQMIPKENLR+GDRV+A++LR+DR+ARGPQ+ILS Sbjct: 140 VSGTIKRMERGNAIIEAGKIEALLPRDQMIPKENLRVGDRVKAFLLRIDRNARGPQIILS 199 Query: 61 RTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR 120 RTAPEFI+KLF+LEVPEIE G +EIK+AARDPG+RAKIAV + D R+DPIGTCVGMRG+R Sbjct: 200 RTAPEFIIKLFDLEVPEIEDGLMEIKAAARDPGMRAKIAVKSNDPRVDPIGTCVGMRGTR 259 Query: 121 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIAI 180 V AVT EL GERVDIV WS+DPAQFVIGALAPA V+SIVVDEEKH+MDVVVDE NLAIAI Sbjct: 260 VTAVTNELAGERVDIVHWSQDPAQFVIGALAPAEVSSIVVDEEKHSMDVVVDEANLAIAI 319 Query: 181 GRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEGF 240 GRGGQNVRLA+ELT W IN+MT EES K AETA R LFMEKLDVD+EVA+IL++EGF Sbjct: 320 GRGGQNVRLASELTGWNINLMTQEESEKKVEAETAATRVLFMEKLDVDEEVANILIDEGF 379 Query: 241 STLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGMEEELINFEGL 300 STLEE+AYVP+ EMLEIE+FDE+TVNELRNRAR+ L+TEAI +EE LEG+E+ L+ +G+ Sbjct: 380 STLEEVAYVPLAEMLEIEAFDEDTVNELRNRARNVLLTEAIVTEEQLEGVEDSLLALDGM 439 Query: 301 DRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERALRARQLIENA 348 D+ LA KL GVKTL A LA DE I + ++ RA+QLI NA Sbjct: 440 DKSLAAKLASGGVKTLDDLADLAVDELTEITGIDAD---RAKQLITNA 484 >ref|YP_003168175.1| transcription elongation factor NusA [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gb|ACV36246.1| NusA antitermination factor [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 490 Score = 498 bits (1281), Expect = e-139, Method: Compositional matrix adjust. Identities = 248/348 (71%), Positives = 295/348 (84%), Gaps = 3/348 (0%) Query: 1 VTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVILS 60 VTGTIKRMERG+AIIE+GKIEA LPRDQMIP+ENLRIGDRV+AY+LR+DR+ARGPQ+ILS Sbjct: 140 VTGTIKRMERGNAIIETGKIEAVLPRDQMIPRENLRIGDRVKAYLLRIDRAARGPQLILS 199 Query: 61 RTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR 120 RTAPEFI++LF LEVPE++ G LEIK+AARDPG+RAKIAV + D+RIDPIGTCVGMRG R Sbjct: 200 RTAPEFIIRLFALEVPEVDDGLLEIKAAARDPGMRAKIAVKSNDQRIDPIGTCVGMRGMR 259 Query: 121 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIAI 180 V AVT EL GERVDIVLWS DPAQFVIGALAPA V+SI+VDEEKH+MDVVVDE+NLAIAI Sbjct: 260 VTAVTNELAGERVDIVLWSADPAQFVIGALAPAEVSSIIVDEEKHSMDVVVDEQNLAIAI 319 Query: 181 GRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEGF 240 GRGGQNVRLA+E+T W IN+MT EES AE A IR LFMEKLDVD+E+A+IL+EEGF Sbjct: 320 GRGGQNVRLASEMTGWTINLMTEEESKTLVEAEAAAIRVLFMEKLDVDEELANILIEEGF 379 Query: 241 STLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGMEEELINFEGL 300 STLEE+AYVP++EM+EIESFDE TV ELR RAR+ L+T+AI +EE + + E+++N EG+ Sbjct: 380 STLEEVAYVPLHEMIEIESFDEATVQELRERARNVLLTDAIVTEEKIGEVAEDMLNLEGM 439 Query: 301 DRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERALRARQLIENA 348 D+VLAGKL +G+KT A LA DE I + + RA+QLI A Sbjct: 440 DKVLAGKLASSGIKTRDDLADLAVDELTEITGIDTP---RAKQLITTA 484 >ref|YP_412552.1| transcription elongation factor NusA [Nitrosospira multiformis ATCC 25196] gb|ABB75160.1| NusA antitermination factor [Nitrosospira multiformis ATCC 25196] Length = 495 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 242/345 (70%), Positives = 292/345 (84%), Gaps = 3/345 (0%) Query: 1 VTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVILS 60 VTGTIKRMERG+AIIESG++EA LPRDQMIPKENLR+GDRVRAY+ R+DR+ RGPQ+ILS Sbjct: 140 VTGTIKRMERGNAIIESGRVEAVLPRDQMIPKENLRVGDRVRAYLHRIDRTTRGPQLILS 199 Query: 61 RTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR 120 R PEF++KLFELEVPEIE+G LEIK AARDPG RAKIAV + D+R+DPIGTCVGMRGSR Sbjct: 200 RIVPEFLIKLFELEVPEIEEGLLEIKVAARDPGSRAKIAVKSNDQRVDPIGTCVGMRGSR 259 Query: 121 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIAI 180 VQAVTGEL GERVDI+LWS+DPA FVI ALAPA ++SI+VDEEKH+MD+VVDE NLA AI Sbjct: 260 VQAVTGELAGERVDIILWSDDPATFVINALAPAEISSILVDEEKHSMDIVVDEGNLAQAI 319 Query: 181 GRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEGF 240 GRGGQNVRLA+ELT W++NIMT EES K+ E +++R LFMEKLDVD+EVADIL +EGF Sbjct: 320 GRGGQNVRLASELTGWELNIMTMEESQAKNEEEFSVLRHLFMEKLDVDEEVADILAQEGF 379 Query: 241 STLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGMEEELINFEGL 300 +TLEE+AYVP++EM+EIE+FDE+TVNELRNRAR+AL+TEAI SEE +E + E+L+ EG+ Sbjct: 380 TTLEEVAYVPLSEMMEIEAFDEQTVNELRNRARNALLTEAIVSEEKVEHIAEDLLALEGM 439 Query: 301 DRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERALRARQLI 345 D A +L GV T A LA D+ ++ + +E RARQLI Sbjct: 440 DSQTARELAAKGVSTQEDLADLAVDDLVEMVEMDTE---RARQLI 481