BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0014.p (298 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776988.1| tRNA pseudouridine synthase B protein [Herba... 591 e-167 ref|YP_001354183.1| tRNA pseudouridine synthase B [Janthinobacte... 443 e-122 ref|YP_001100683.1| tRNA pseudouridine 5S synthase [Herminiimona... 441 e-122 ref|ZP_08273997.1| tRNA pseudouridine 5S synthase [Oxalobacterac... 437 e-121 ref|YP_004754088.1| tRNA pseudouridine 5S synthase [Collimonas f... 428 e-118 ref|ZP_04579222.1| tRNA pseudouridine synthase B [Oxalobacter fo... 392 e-107 ref|ZP_04577090.1| tRNA pseudouridine synthase B [Oxalobacter fo... 382 e-104 ref|NP_519412.1| tRNA pseudouridine synthase B [Ralstonia solana... 376 e-102 emb|CBJ38540.1| tRNA pseudouridine synthase B [Ralstonia solanac... 375 e-102 ref|YP_002230639.1| tRNA pseudouridine synthase B [Burkholderia ... 372 e-101 >ref|YP_003776988.1| tRNA pseudouridine synthase B protein [Herbaspirillum seropedicae SmR1] gb|ADJ65080.1| tRNA pseudouridine synthase B protein [Herbaspirillum seropedicae SmR1] Length = 325 Score = 591 bits (1524), Expect = e-167, Method: Compositional matrix adjust. Identities = 297/298 (99%), Positives = 298/298 (100%) Query: 1 VHGVLLLDKPVGLSSNDALIRAKRMLNAPKAGHTGTLDPFATGLLPLCFGEATKFSQDLL 60 VHGVLLLDKPVGLSSNDALIRAKRMLNAPKAGHTGTLDPFATGLLPLCFGEATKFSQDLL Sbjct: 28 VHGVLLLDKPVGLSSNDALIRAKRMLNAPKAGHTGTLDPFATGLLPLCFGEATKFSQDLL 87 Query: 61 EADKTYEAVVHLGVRTDTGDTEGQVLSERPVEVSVEQIEAAMAQFRGPISQVPPMHSALK 120 EADKTYEAVVHLGVRTDTGDTEGQVLSERPVEVSVEQIEAAMAQFRGPISQVPPMHSALK Sbjct: 88 EADKTYEAVVHLGVRTDTGDTEGQVLSERPVEVSVEQIEAAMAQFRGPISQVPPMHSALK 147 Query: 121 RDGKPLYEYARAGITLEREARNVTIHALELLDYQAPMLRIRVTCSKGTYIRVLGEDIGEV 180 RDGKPLYEYARAGITLEREARNVTIHALELL+YQAPMLRIRVTCSKGTYIRVLGEDIGEV Sbjct: 148 RDGKPLYEYARAGITLEREARNVTIHALELLNYQAPMLRIRVTCSKGTYIRVLGEDIGEV 207 Query: 181 LGCGAHLNALRRIGVGPLTLEGAVTLESVDAAGELEARKALLLPVDGLLRSFPAVQLSDE 240 LGCGAHLNALRRIGVGPLTLEGAVTLESVDAAGELEARKALLLPVDGLLRSFPAVQLSDE Sbjct: 208 LGCGAHLNALRRIGVGPLTLEGAVTLESVDAAGELEARKALLLPVDGLLRSFPAVQLSDE 267 Query: 241 LARRFLHGQRLPLGKEGVAVPQQTGRVRVYRSSDAALLGTGLLQEYAILAPERLVSTA 298 LARRFLHGQRLPLGKEGVAVPQQTGRVRVYRSSDAALLGTGLLQEYAILAPERLVSTA Sbjct: 268 LARRFLHGQRLPLGKEGVAVPQQTGRVRVYRSSDAALLGTGLLQEYAILAPERLVSTA 325 >ref|YP_001354183.1| tRNA pseudouridine synthase B [Janthinobacterium sp. Marseille] gb|ABR89004.1| tRNA pseudouridine synthase B [Janthinobacterium sp. Marseille] Length = 314 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 221/297 (74%), Positives = 251/297 (84%), Gaps = 1/297 (0%) Query: 1 VHGVLLLDKPVGLSSNDALIRAKRMLNAPKAGHTGTLDPFATGLLPLCFGEATKFSQDLL 60 VHGVLLLDK VG+SSNDALI+AK +L+A KAGHTGTLDPFATGLLPLCFGEATKF+QDLL Sbjct: 13 VHGVLLLDKQVGVSSNDALIKAKWLLSALKAGHTGTLDPFATGLLPLCFGEATKFAQDLL 72 Query: 61 EADKTYEAVVHLGVRTDTGDTEGQVLSERPVEVSVEQIEAAMAQFRGPISQVPPMHSALK 120 +ADKTYE VVHLG+ T+TGDTEG+ +S V+V+ EQI+ + QFRG I QVPPM+SALK Sbjct: 73 DADKTYETVVHLGITTNTGDTEGETISTAAVDVTREQIDTVLGQFRGDILQVPPMYSALK 132 Query: 121 RDGKPLYEYARAGITLEREARNVTIHALELLDYQAPMLRIRVTCSKGTYIRVLGEDIGEV 180 RDGKPLYEYAR GITLEREAR VTIH LE +DYQAP L +RV CSKGTYIRVLGEDIG Sbjct: 133 RDGKPLYEYAREGITLEREARPVTIHLLEFVDYQAPFLTLRVRCSKGTYIRVLGEDIGAA 192 Query: 181 LGCGAHLNALRRIGVGPLTLEGAVTLESVDAAGELEARKALLLPVDGLLRSFPAVQLSDE 240 LGCGAHLNALRRI VG L ++ A+T+E + AA E AR ALL PVD LL SFPA+ LS+E Sbjct: 193 LGCGAHLNALRRIQVGDLLIDKAITIEQL-AATEEGARSALLAPVDALLTSFPALYLSEE 251 Query: 241 LARRFLHGQRLPLGKEGVAVPQQTGRVRVYRSSDAALLGTGLLQEYAILAPERLVST 297 LARRFLHGQRL LGKE + VP + GRVRVYR +D LLGTGL+QE+AILAPERL+ST Sbjct: 252 LARRFLHGQRLALGKEDIVVPPEQGRVRVYRDADKVLLGTGLMQEFAILAPERLIST 308 >ref|YP_001100683.1| tRNA pseudouridine 5S synthase [Herminiimonas arsenicoxydans] emb|CAL62562.1| tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) [Herminiimonas arsenicoxydans] Length = 314 Score = 441 bits (1134), Expect = e-122, Method: Compositional matrix adjust. Identities = 216/297 (72%), Positives = 251/297 (84%), Gaps = 1/297 (0%) Query: 1 VHGVLLLDKPVGLSSNDALIRAKRMLNAPKAGHTGTLDPFATGLLPLCFGEATKFSQDLL 60 VHGVLLLDK G+SSNDALI+AK +LNA KAGHTGTLDPFATGLLPLCFGEATKF+QDLL Sbjct: 13 VHGVLLLDKQAGVSSNDALIKAKWLLNALKAGHTGTLDPFATGLLPLCFGEATKFAQDLL 72 Query: 61 EADKTYEAVVHLGVRTDTGDTEGQVLSERPVEVSVEQIEAAMAQFRGPISQVPPMHSALK 120 +ADKTYE VVHLGV T+TGDTEG V++ V++S +QI+A +AQFRG I QVPPM+SALK Sbjct: 73 DADKTYETVVHLGVTTNTGDTEGDVIATHAVDISRQQIDAVLAQFRGDIEQVPPMYSALK 132 Query: 121 RDGKPLYEYARAGITLEREARNVTIHALELLDYQAPMLRIRVTCSKGTYIRVLGEDIGEV 180 RDGKPLYEYARAGITLEREAR VTIH LE +D+QAP L +RV CSKGTYIRVLGEDIG Sbjct: 133 RDGKPLYEYARAGITLEREARPVTIHLLEFVDFQAPFLTLRVRCSKGTYIRVLGEDIGAA 192 Query: 181 LGCGAHLNALRRIGVGPLTLEGAVTLESVDAAGELEARKALLLPVDGLLRSFPAVQLSDE 240 LGCGAHLNALRRI VG L + A+T+E + A + +AR A L VD LL SFPA++LS+E Sbjct: 193 LGCGAHLNALRRIQVGDLLIAQAITIEEL-TAKDADARIAALASVDALLTSFPALRLSEE 251 Query: 241 LARRFLHGQRLPLGKEGVAVPQQTGRVRVYRSSDAALLGTGLLQEYAILAPERLVST 297 LA+RFLHGQRL LGKE + +P+ GR+R+YR SD LLGTGL+QEY+ILAPERL+ST Sbjct: 252 LAKRFLHGQRLALGKENIVLPEGQGRMRIYRESDGQLLGTGLMQEYSILAPERLIST 308 >ref|ZP_08273997.1| tRNA pseudouridine 5S synthase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32517.1| tRNA pseudouridine 5S synthase [Oxalobacteraceae bacterium IMCC9480] Length = 310 Score = 437 bits (1124), Expect = e-121, Method: Compositional matrix adjust. Identities = 218/298 (73%), Positives = 245/298 (82%), Gaps = 1/298 (0%) Query: 1 VHGVLLLDKPVGLSSNDALIRAKRMLNAPKAGHTGTLDPFATGLLPLCFGEATKFSQDLL 60 VHGVLLLDK G SSND LI+AKR+ NA KAGHTGTLDPFATGLLPLCFGEATKF+QDLL Sbjct: 13 VHGVLLLDKAAGHSSNDVLIKAKRLFNAEKAGHTGTLDPFATGLLPLCFGEATKFAQDLL 72 Query: 61 EADKTYEAVVHLGVRTDTGDTEGQVLSERPVEVSVEQIEAAMAQFRGPISQVPPMHSALK 120 EADKTYE VVHLG+R+DTGDTEGQ+L PV+V+ QI+A + +FRG I QVPPM+SALK Sbjct: 73 EADKTYETVVHLGLRSDTGDTEGQILETLPVDVTRAQIDAVLEKFRGAIDQVPPMYSALK 132 Query: 121 RDGKPLYEYARAGITLEREARNVTIHALELLDYQAPMLRIRVTCSKGTYIRVLGEDIGEV 180 RDGKPLYEYARAGITLEREAR V IH LE + Y+AP L +RV+CSKGTYIRVLGEDIG Sbjct: 133 RDGKPLYEYARAGITLEREARPVFIHLLEFVRYEAPFLTLRVSCSKGTYIRVLGEDIGAA 192 Query: 181 LGCGAHLNALRRIGVGPLTLEGAVTLESVDAAGELEARKALLLPVDGLLRSFPAVQLSDE 240 LGCG HLNALRR VG L L AVTLE + A E + R A+L PVD LL SFP + L+DE Sbjct: 193 LGCGGHLNALRRTRVGDLVLADAVTLEQIAAVAE-DQRGAMLAPVDALLASFPLLSLNDE 251 Query: 241 LARRFLHGQRLPLGKEGVAVPQQTGRVRVYRSSDAALLGTGLLQEYAILAPERLVSTA 298 LARRFLHGQRL L KE +A+P GRVRV+R SDA LLGTGL+QE+ +LAPERLVSTA Sbjct: 252 LARRFLHGQRLSLVKEAIALPATEGRVRVFRESDACLLGTGLMQEFGVLAPERLVSTA 309 >ref|YP_004754088.1| tRNA pseudouridine 5S synthase [Collimonas fungivorans Ter331] gb|AEK63265.1| tRNA pseudouridine 5S synthase [Collimonas fungivorans Ter331] Length = 335 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 219/303 (72%), Positives = 249/303 (82%), Gaps = 6/303 (1%) Query: 1 VHGVLLLDKPVGLSSNDALIRAKRMLNAPKAGHTGTLDPFATGLLPLCFGEATKFSQDLL 60 ++GVLLLDKPVG SSNDALI+AK +LNA KAGHTGTLDPFATG+LPLCFGEATKF+QDLL Sbjct: 31 LNGVLLLDKPVGFSSNDALIKAKGLLNAQKAGHTGTLDPFATGVLPLCFGEATKFAQDLL 90 Query: 61 EADKTYEAVVHLGVRTDTGDTEGQVLSERPVEVSVEQIEAAMAQFRGPISQVPPMHSALK 120 +ADKTYE ++HLGV T TGDTEG+VL + V VS QI+A +AQFRGPI QVPPM+SALK Sbjct: 91 DADKTYETLIHLGVSTTTGDTEGEVLERKDVSVSRAQIDAVLAQFRGPIKQVPPMYSALK 150 Query: 121 RDGKPLYEYARAGITLEREARNVTIHALELLDYQAPMLRIRVTCSKGTYIRVLGEDIGEV 180 RDGKPLYEYARAGITLEREAR+V+IH LE L Y+AP LR+RV CSKGTYIRVLGEDIG Sbjct: 151 RDGKPLYEYARAGITLEREARDVSIHTLEFLAYEAPFLRLRVACSKGTYIRVLGEDIGAA 210 Query: 181 LGCGAHLNALRRIGVGPLTLEGAVTLESVDAAGELEARKALLLPVDGLLRSFPAVQLSDE 240 LGCGAHL LRRI VG LTL+G VTLE +DA G+ E R ALL PVD LL +FP V LS+ Sbjct: 211 LGCGAHLQELRRIQVGHLTLDGCVTLEQLDATGQAE-RSALLAPVDSLLLTFPEVLLSEP 269 Query: 241 LARRFLHGQRLPLGKEGVAVPQQTGRVRVY-RSSDAA----LLGTGLLQEYAILAPERLV 295 LA+RFL GQRL L KEGVA+P GRVRVY + +DA LLGT L EY +LAPERL+ Sbjct: 270 LAKRFLQGQRLTLAKEGVALPADAGRVRVYLQPADAVSVRQLLGTAQLHEYGVLAPERLI 329 Query: 296 STA 298 +TA Sbjct: 330 ATA 332 >ref|ZP_04579222.1| tRNA pseudouridine synthase B [Oxalobacter formigenes OXCC13] gb|EEO30195.1| tRNA pseudouridine synthase B [Oxalobacter formigenes OXCC13] Length = 318 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 199/301 (66%), Positives = 233/301 (77%), Gaps = 3/301 (0%) Query: 1 VHGVLLLDKPVGLSSNDALIRAKRMLNAPKAGHTGTLDPFATGLLPLCFGEATKFSQDLL 60 + GVLLLDKP G+SSNDALIRAKR++NA KAGHTGTLDPFATGLLP+CFGEATKFSQDLL Sbjct: 13 IDGVLLLDKPAGISSNDALIRAKRIMNAKKAGHTGTLDPFATGLLPICFGEATKFSQDLL 72 Query: 61 EADKTYEAVVHLGVRTDTGDTEGQVL-SERPVEVSVEQIEAAMAQFRGPISQVPPMHSAL 119 +ADKTYE VVHLG+ T TGDTEG+VL + V S ++IE+A+A FRG I Q+PPM+SAL Sbjct: 73 DADKTYETVVHLGISTTTGDTEGEVLKTSEAVLFSQDEIESALAMFRGDIFQIPPMYSAL 132 Query: 120 KRDGKPLYEYARAGITLEREARNVTIHALELLDYQAPMLRIRVTCSKGTYIRVLGEDIGE 179 KRDGKPLYEYARAG+ LEREAR VTI L LLD+++P L +RV CSKGTY+RVLGEDIG Sbjct: 133 KRDGKPLYEYARAGVELEREARPVTISELTLLDWESPFLTLRVACSKGTYVRVLGEDIGN 192 Query: 180 VLGCGAHLNALRRIGVGPLTLEGAVTLESVDAA--GELEARKALLLPVDGLLRSFPAVQL 237 LGCGAHL ALRRI VG L +E AV+L ++ A E AR L PVD LL SFPA+ L Sbjct: 193 ALGCGAHLKALRRIRVGSLGIEKAVSLTDMETAFPEETAARHEKLEPVDYLLSSFPALSL 252 Query: 238 SDELARRFLHGQRLPLGKEGVAVPQQTGRVRVYRSSDAALLGTGLLQEYAILAPERLVST 297 + L +RFL+GQRL L KEGV + GR R+Y S +GT L+E +LAPERLVS Sbjct: 253 NAMLTKRFLNGQRLSLAKEGVQLSDARGRFRIYASDSGIFMGTAQLREDGVLAPERLVSL 312 Query: 298 A 298 A Sbjct: 313 A 313 >ref|ZP_04577090.1| tRNA pseudouridine synthase B [Oxalobacter formigenes HOxBLS] gb|EEO28052.1| tRNA pseudouridine synthase B [Oxalobacter formigenes HOxBLS] Length = 318 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/300 (66%), Positives = 234/300 (78%), Gaps = 6/300 (2%) Query: 1 VHGVLLLDKPVGLSSNDALIRAKRMLNAPKAGHTGTLDPFATGLLPLCFGEATKFSQDLL 60 VHGVLLLDKP G+SSNDALIRAKR+ NA KAGHTGTLDPFATGLLPLCFGEATKFSQDLL Sbjct: 14 VHGVLLLDKPAGISSNDALIRAKRIFNAKKAGHTGTLDPFATGLLPLCFGEATKFSQDLL 73 Query: 61 EADKTYEAVVHLGVRTDTGDTEGQVLSERPVEVS--VEQIEAAMAQFRGPISQVPPMHSA 118 +ADKTYE VVHLG+RT TGDTEG+++ ER VS ++IEA +++FRG I QVPPM+SA Sbjct: 74 DADKTYETVVHLGIRTTTGDTEGEIV-ERTDAVSFRTDEIEAVLSRFRGDIRQVPPMYSA 132 Query: 119 LKRDGKPLYEYARAGITLEREARNVTIHALELLDYQAPMLRIRVTCSKGTYIRVLGEDIG 178 LKRDGKPLYEYARAGI LEREAR VT+H L LLDY AP L +RV CSKGTYIR LGEDIG Sbjct: 133 LKRDGKPLYEYARAGIELEREARAVTVHELTLLDYSAPCLALRVRCSKGTYIRALGEDIG 192 Query: 179 EVLGCGAHLNALRRIGVGPLTLEGAVTLESVDAAGELEA--RKALLLPVDGLLRSFPAVQ 236 + LGCGAHL +LRR VG LTL+ AV+L +++ AG A L PVD LL SFP++ Sbjct: 193 QALGCGAHLKSLRRTRVGFLTLDSAVSLPALEEAGGKTAGGNPPSLEPVDYLLSSFPSLA 252 Query: 237 LSDELARRFLHGQRLPLGKEGVAVPQQTGRVRVYRSSDAALLGTGLLQEYAILAPERLVS 296 L+ LA+RFL+GQRL L KE + TGR RVY + + +GT ++ +LAPERLV+ Sbjct: 253 LNAVLAKRFLNGQRLSLAKENIGTAGMTGRCRVY-AENGVFMGTAEIRPDGVLAPERLVA 311 >ref|NP_519412.1| tRNA pseudouridine synthase B [Ralstonia solanacearum GMI1000] sp|Q8XZV4.1|TRUB_RALSO RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA pseudouridine(55) synthase; Short=Psi55 synthase; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase emb|CAD14993.1| probable trna pseudouridine synthase b (trna pseudouridine 55synthase) (psi55 synthase) (trna-uridine isomerase) (trna pseudouridylate synthase) protein [Ralstonia solanacearum GMI1000] Length = 314 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 203/302 (67%), Positives = 236/302 (78%), Gaps = 13/302 (4%) Query: 1 VHGVLLLDKPVGLSSNDALIRAKRMLNAPKAGHTGTLDPFATGLLPLCFGEATKFSQDLL 60 VHGVLLLDKP+G SSNDALIRAKR+L A KAGHTGTLDP ATGLLPLCFGEATKFSQDLL Sbjct: 17 VHGVLLLDKPIGWSSNDALIRAKRLLWAKKAGHTGTLDPLATGLLPLCFGEATKFSQDLL 76 Query: 61 EADKTYEAVVHLGVRTDTGDTEGQVLSERPVEVSVEQIEAAMAQFRGPISQVPPMHSALK 120 EADKTYEAVV LG+RT T D EG+VLSERPV V+ EQ+ AA+ +F G I QVPPMHSALK Sbjct: 77 EADKTYEAVVRLGIRTSTADAEGEVLSERPVAVTPEQLRAAIGRFVGEIDQVPPMHSALK 136 Query: 121 RDGKPLYEYARAGITLEREARNVTIHALEL----LDYQAPMLRIRVTCSKGTYIRVLGED 176 +DGKPLYEYARAG T+ER AR VTI A+++ LD AP + +RV CSKGTYIR LGED Sbjct: 137 KDGKPLYEYARAGQTVERAARRVTIRAIDVLATDLDAAAPTVTLRVCCSKGTYIRTLGED 196 Query: 177 IGEVLGCGAHLNALRRIGVGPLTLEGAVTLESVDAAGELEARKALLLPVDGLLRSFPAVQ 236 +GE LGCGAHL ALRR VG LTL+GAVTLE+++AA E + R ALL PVD LL++ P V+ Sbjct: 197 LGEALGCGAHLVALRRTQVGSLTLDGAVTLEALEAASE-DQRAALLAPVDALLQTLPRVE 255 Query: 237 LSDELARRFLHGQRLPLGKEGVAVPQQTGRVRVYRS---SDAALLGTGLLQEYAILAPER 293 L E +RRFLHGQRLPL +++P +VRVY + + A+LLG Q +L PER Sbjct: 256 LGAEDSRRFLHGQRLPL---QLSLPSAE-QVRVYGARGEAGASLLGVAAWQG-GVLRPER 310 Query: 294 LV 295 LV Sbjct: 311 LV 312 >emb|CBJ38540.1| tRNA pseudouridine synthase B [Ralstonia solanacearum CMR15] Length = 314 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 203/302 (67%), Positives = 236/302 (78%), Gaps = 13/302 (4%) Query: 1 VHGVLLLDKPVGLSSNDALIRAKRMLNAPKAGHTGTLDPFATGLLPLCFGEATKFSQDLL 60 VHGVLLLDKP+G SSNDALIRAKR+L A KAGHTGTLDP ATGLLPLCFGEATKFSQDLL Sbjct: 17 VHGVLLLDKPIGWSSNDALIRAKRLLWAKKAGHTGTLDPLATGLLPLCFGEATKFSQDLL 76 Query: 61 EADKTYEAVVHLGVRTDTGDTEGQVLSERPVEVSVEQIEAAMAQFRGPISQVPPMHSALK 120 EADKTYE VV LG+RT T D EG+VLSERPV V+ EQ+ AA+ +F G I QVPPMHSALK Sbjct: 77 EADKTYETVVRLGIRTSTADAEGEVLSERPVAVTPEQLRAAIGRFVGEIDQVPPMHSALK 136 Query: 121 RDGKPLYEYARAGITLEREARNVTIHALEL----LDYQAPMLRIRVTCSKGTYIRVLGED 176 +DGKPLYEYARAG T+ER AR VTI A+++ LD AP + +RV CSKGTYIR LGED Sbjct: 137 KDGKPLYEYARAGQTVERAARRVTIRAIDVLATDLDAAAPTVTLRVCCSKGTYIRTLGED 196 Query: 177 IGEVLGCGAHLNALRRIGVGPLTLEGAVTLESVDAAGELEARKALLLPVDGLLRSFPAVQ 236 +GEVLGCGAHL ALRR VG LTL+GAVTLE+++AA E + R ALL PVD LL++ P V+ Sbjct: 197 LGEVLGCGAHLVALRRTQVGSLTLDGAVTLEALEAASE-DQRAALLAPVDALLQTLPRVE 255 Query: 237 LSDELARRFLHGQRLPLGKEGVAVPQQTGRVRVYRS---SDAALLGTGLLQEYAILAPER 293 L E +RRFLHGQRLPL +++P +VRVY + + A+LLG Q +L PER Sbjct: 256 LGAEDSRRFLHGQRLPL---QLSLPSAE-QVRVYGARGEAGASLLGVAAWQG-GVLRPER 310 Query: 294 LV 295 LV Sbjct: 311 LV 312 >ref|YP_002230639.1| tRNA pseudouridine synthase B [Burkholderia cenocepacia J2315] emb|CAR51808.1| tRNA pseudouridine synthase B [Burkholderia cenocepacia J2315] Length = 310 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 199/298 (66%), Positives = 224/298 (75%), Gaps = 4/298 (1%) Query: 1 VHGVLLLDKPVGLSSNDALIRAKRMLNAPKAGHTGTLDPFATGLLPLCFGEATKFSQDLL 60 + GVLLLDKPVGLSSNDALIRAKR+L A KAGHTGTLDP A+GLLPLCFGEATKFSQDLL Sbjct: 16 LDGVLLLDKPVGLSSNDALIRAKRLLLAKKAGHTGTLDPLASGLLPLCFGEATKFSQDLL 75 Query: 61 EADKTYEAVVHLGVRTDTGDTEGQVLSERPVEVSVEQIEAAMAQFRGPISQVPPMHSALK 120 +ADKTYEA + LG RT TGD EG V+ RPVE +EAA+ +F G I QVPPM+SALK Sbjct: 76 DADKTYEATMRLGQRTATGDAEGDVIDTRPVECDRAAVEAALVRFTGDIVQVPPMYSALK 135 Query: 121 RDGKPLYEYARAGITLEREARNVTIHALELLDYQAPMLRIRVTCSKGTYIRVLGEDIGEV 180 RDGKPLYEYARAG T+ERE RNVTIHALELL + P + RVTCSKGTY+R L EDIGE Sbjct: 136 RDGKPLYEYARAGQTVEREGRNVTIHALELLACELPDVTFRVTCSKGTYVRTLAEDIGEA 195 Query: 181 LGCGAHLNALRRIGVGPLTLEGAVTLESVDAAGELEARKALLLPVDGLLRSFPAVQLSDE 240 LGCGAHL LRR GVG LTLE AVTL+++ A E AR A L PVD LL +FPA++L D Sbjct: 196 LGCGAHLTMLRRTGVGALTLEHAVTLDALSDAAE-AARDAWLQPVDALLSTFPAIRLDDA 254 Query: 241 LARRFLHGQRLPLGKEGVAVPQQTGRVRVYRSSDAALLGTGLLQEYAILAPERLVSTA 298 A+RFLHGQRLPL RVRVY ++ LLG + +LAPERLV TA Sbjct: 255 SAKRFLHGQRLPLSALEPIDAADGERVRVYDAT--RLLGVA-RKANGVLAPERLVVTA 309