BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0545.p (150 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774446.1| RbsD or FucU transport protein [Herbaspirill... 306 1e-81 ref|YP_004153412.1| rbsd or fucu transport [Variovorax paradoxus... 275 1e-72 ref|YP_004752844.1| sugar binding or transport, RbsD/FucU [Colli... 258 3e-67 ref|YP_556483.1| sugar binding or transport, RbsD/FucU [Burkhold... 225 2e-57 ref|YP_003910501.1| RbsD or FucU transport [Burkholderia sp. CCG... 222 1e-56 ref|YP_001888295.1| RbsD or FucU transport [Burkholderia phytofi... 221 2e-56 ref|YP_003607890.1| RbsD or FucU transport [Burkholderia sp. CCG... 219 7e-56 ref|YP_554439.1| RbsD or FucU transport [Burkholderia xenovorans... 219 1e-55 ref|ZP_03268574.1| RbsD or FucU transport [Burkholderia sp. H160... 219 2e-55 ref|YP_004230589.1| RbsD or FucU transport [Burkholderia sp. CCG... 218 2e-55 >ref|YP_003774446.1| RbsD or FucU transport protein [Herbaspirillum seropedicae SmR1] gb|ADJ62538.1| RbsD or FucU transport protein [Herbaspirillum seropedicae SmR1] Length = 150 Score = 306 bits (783), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 150/150 (100%), Positives = 150/150 (100%) Query: 1 MLKNLHPLLNADVLYALRAMGHGDELVLCDANFPADSVARQTVLGKVLRIDGVGTTEAAR 60 MLKNLHPLLNADVLYALRAMGHGDELVLCDANFPADSVARQTVLGKVLRIDGVGTTEAAR Sbjct: 1 MLKNLHPLLNADVLYALRAMGHGDELVLCDANFPADSVARQTVLGKVLRIDGVGTTEAAR 60 Query: 61 AILSVLPLDNAVEQPVRRMEIMGEPATIPPVQQELQQEVNQAEGRARPLGSIERFAFYEA 120 AILSVLPLDNAVEQPVRRMEIMGEPATIPPVQQELQQEVNQAEGRARPLGSIERFAFYEA Sbjct: 61 AILSVLPLDNAVEQPVRRMEIMGEPATIPPVQQELQQEVNQAEGRARPLGSIERFAFYEA 120 Query: 121 AKKAYCVIATGERRFYGCFLLKKGVLPPEA 150 AKKAYCVIATGERRFYGCFLLKKGVLPPEA Sbjct: 121 AKKAYCVIATGERRFYGCFLLKKGVLPPEA 150 >ref|YP_004153412.1| rbsd or fucu transport [Variovorax paradoxus EPS] gb|ADU35301.1| RbsD or FucU transport [Variovorax paradoxus EPS] Length = 150 Score = 275 bits (704), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 130/150 (86%), Positives = 142/150 (94%) Query: 1 MLKNLHPLLNADVLYALRAMGHGDELVLCDANFPADSVARQTVLGKVLRIDGVGTTEAAR 60 MLK++HPLLNADVLYALRAMGHGDELVLCDANFPADSVARQT LG++LRIDGVGTTEAAR Sbjct: 1 MLKSIHPLLNADVLYALRAMGHGDELVLCDANFPADSVARQTTLGRLLRIDGVGTTEAAR 60 Query: 61 AILSVLPLDNAVEQPVRRMEIMGEPATIPPVQQELQQEVNQAEGRARPLGSIERFAFYEA 120 AILSVLPLDNAV+ P RRMEIMGEP IPPVQQE+Q+E++ AEGRARPLGSIERFAFYEA Sbjct: 61 AILSVLPLDNAVDDPARRMEIMGEPNEIPPVQQEMQREIDAAEGRARPLGSIERFAFYEA 120 Query: 121 AKKAYCVIATGERRFYGCFLLKKGVLPPEA 150 A++AYCVIATGERRFYGCF+ KKGVL PEA Sbjct: 121 ARRAYCVIATGERRFYGCFIFKKGVLAPEA 150 >ref|YP_004752844.1| sugar binding or transport, RbsD/FucU [Collimonas fungivorans Ter331] gb|AEK62021.1| sugar binding or transport, RbsD/FucU [Collimonas fungivorans Ter331] Length = 150 Score = 258 bits (658), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 121/150 (80%), Positives = 135/150 (90%) Query: 1 MLKNLHPLLNADVLYALRAMGHGDELVLCDANFPADSVARQTVLGKVLRIDGVGTTEAAR 60 MLK + PLLNADVLYALRAMGHGDELVLCDANFPADSVARQT LG++LRIDGVGT +AAR Sbjct: 1 MLKLIDPLLNADVLYALRAMGHGDELVLCDANFPADSVARQTTLGRLLRIDGVGTAQAAR 60 Query: 61 AILSVLPLDNAVEQPVRRMEIMGEPATIPPVQQELQQEVNQAEGRARPLGSIERFAFYEA 120 AILSVLPLDNAV+ P RRME+ GEP +PPVQQE+Q E++QAEGR R +GS+ERFAFYE Sbjct: 61 AILSVLPLDNAVDAPARRMEVAGEPGNVPPVQQEVQLEIDQAEGRVRVMGSVERFAFYET 120 Query: 121 AKKAYCVIATGERRFYGCFLLKKGVLPPEA 150 A+KAYCVIATGERRFYGCFL KKGV+ PEA Sbjct: 121 ARKAYCVIATGERRFYGCFLFKKGVIAPEA 150 >ref|YP_556483.1| sugar binding or transport, RbsD/FucU [Burkholderia xenovorans LB400] gb|ABE37133.1| sugar binding or transport, RbsD/FucU [Burkholderia xenovorans LB400] Length = 162 Score = 225 bits (573), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 109/146 (74%), Positives = 121/146 (82%) Query: 1 MLKNLHPLLNADVLYALRAMGHGDELVLCDANFPADSVARQTVLGKVLRIDGVGTTEAAR 60 MLKNL PLLNADVLYALRAMGHGDELVLCDANFPADSVAR TV GK+LR+DGV A R Sbjct: 1 MLKNLDPLLNADVLYALRAMGHGDELVLCDANFPADSVARATVTGKLLRLDGVDAARAIR 60 Query: 61 AILSVLPLDNAVEQPVRRMEIMGEPATIPPVQQELQQEVNQAEGRARPLGSIERFAFYEA 120 A+LSVLPLD V+ P RME++GEP T+P VQ+E Q EVN AEGR P SIERFAFYE Sbjct: 61 AVLSVLPLDTFVDAPALRMEVVGEPHTLPAVQREAQAEVNAAEGRDVPFASIERFAFYER 120 Query: 121 AKKAYCVIATGERRFYGCFLLKKGVL 146 A++AYCVIATGE+R YGCF+ KKGVL Sbjct: 121 ARRAYCVIATGEQRGYGCFVFKKGVL 146 >ref|YP_003910501.1| RbsD or FucU transport [Burkholderia sp. CCGE1003] gb|ADN61210.1| RbsD or FucU transport [Burkholderia sp. CCGE1003] Length = 154 Score = 222 bits (566), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 104/146 (71%), Positives = 119/146 (81%) Query: 1 MLKNLHPLLNADVLYALRAMGHGDELVLCDANFPADSVARQTVLGKVLRIDGVGTTEAAR 60 MLKNL PLLNAD+L+ALR+MGHGDELV+CDANFPADSVA TVLGK+LR+DG A R Sbjct: 1 MLKNLDPLLNADILHALRSMGHGDELVICDANFPADSVAHSTVLGKLLRMDGASAPRAVR 60 Query: 61 AILSVLPLDNAVEQPVRRMEIMGEPATIPPVQQELQQEVNQAEGRARPLGSIERFAFYEA 120 A+LSV+PLD +EQP RME++GEP T+P VQ+E Q EVN AEGR P SIERFAFYE Sbjct: 61 AVLSVMPLDTFIEQPASRMEVVGEPHTLPAVQREAQNEVNSAEGREVPFASIERFAFYER 120 Query: 121 AKKAYCVIATGERRFYGCFLLKKGVL 146 A+KAYCVIATGE R YGCF+ KGVL Sbjct: 121 ARKAYCVIATGEERGYGCFVFTKGVL 146 >ref|YP_001888295.1| RbsD or FucU transport [Burkholderia phytofirmans PsJN] gb|ACD18925.1| RbsD or FucU transport [Burkholderia phytofirmans PsJN] Length = 154 Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 104/146 (71%), Positives = 120/146 (82%) Query: 1 MLKNLHPLLNADVLYALRAMGHGDELVLCDANFPADSVARQTVLGKVLRIDGVGTTEAAR 60 MLKNL PLLNAD+L+ALRAMGHGDELV+CDANFP DSVAR++VLGKVLR+DGV A R Sbjct: 1 MLKNLDPLLNADILHALRAMGHGDELVICDANFPGDSVARESVLGKVLRLDGVSAPRAIR 60 Query: 61 AILSVLPLDNAVEQPVRRMEIMGEPATIPPVQQELQQEVNQAEGRARPLGSIERFAFYEA 120 A+LSV+PLD +E P RME++GEP T+P VQ+E Q E+N AEGR P SIERFAFYE Sbjct: 61 AVLSVMPLDTFIEHPASRMEVVGEPHTMPAVQREAQVEINAAEGRDVPFASIERFAFYER 120 Query: 121 AKKAYCVIATGERRFYGCFLLKKGVL 146 A+KAYCVIATGE R YGCF+ KGVL Sbjct: 121 ARKAYCVIATGEERGYGCFVFTKGVL 146 >ref|YP_003607890.1| RbsD or FucU transport [Burkholderia sp. CCGE1002] gb|ADG18379.1| RbsD or FucU transport [Burkholderia sp. CCGE1002] Length = 154 Score = 219 bits (559), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 105/146 (71%), Positives = 120/146 (82%) Query: 1 MLKNLHPLLNADVLYALRAMGHGDELVLCDANFPADSVARQTVLGKVLRIDGVGTTEAAR 60 MLKNL PLLNAD+L+ALR+MGHGDELV+CDANFPAD+VAR TVLGK LR+DGVG+ A R Sbjct: 1 MLKNLDPLLNADILHALRSMGHGDELVICDANFPADAVARDTVLGKPLRLDGVGSPRAIR 60 Query: 61 AILSVLPLDNAVEQPVRRMEIMGEPATIPPVQQELQQEVNQAEGRARPLGSIERFAFYEA 120 A+LSVLPLD +E P RME++GEP TIP VQ+E Q EVN EGR P SIERFAFYE Sbjct: 61 AVLSVLPLDTFIEHPASRMEVVGEPQTIPAVQREAQAEVNAGEGREVPFVSIERFAFYER 120 Query: 121 AKKAYCVIATGERRFYGCFLLKKGVL 146 A++AYCVIATGE R YGCF+ KGVL Sbjct: 121 ARRAYCVIATGEERGYGCFVFTKGVL 146 >ref|YP_554439.1| RbsD or FucU transport [Burkholderia xenovorans LB400] gb|ABE35089.1| RbsD or FucU transport [Burkholderia xenovorans LB400] Length = 154 Score = 219 bits (557), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 102/146 (69%), Positives = 119/146 (81%) Query: 1 MLKNLHPLLNADVLYALRAMGHGDELVLCDANFPADSVARQTVLGKVLRIDGVGTTEAAR 60 MLKNL PLLNAD+LYALR+MGHGDEL++CDANFP DSVAR++VLGK+LR+DGV A R Sbjct: 1 MLKNLDPLLNADILYALRSMGHGDELIICDANFPGDSVARESVLGKLLRLDGVSAPRAIR 60 Query: 61 AILSVLPLDNAVEQPVRRMEIMGEPATIPPVQQELQQEVNQAEGRARPLGSIERFAFYEA 120 A+LSV+PLD +E P RME++GEP T+P VQ+E Q EVN AEGR P IERFAFYE Sbjct: 61 AVLSVMPLDTFIEHPASRMEVVGEPHTLPAVQREAQTEVNAAEGRDVPFAPIERFAFYER 120 Query: 121 AKKAYCVIATGERRFYGCFLLKKGVL 146 A+KAYCVIATGE R YGCF+ KGVL Sbjct: 121 ARKAYCVIATGEARGYGCFVFTKGVL 146 >ref|ZP_03268574.1| RbsD or FucU transport [Burkholderia sp. H160] gb|EDZ99867.1| RbsD or FucU transport [Burkholderia sp. H160] Length = 154 Score = 219 bits (557), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 105/146 (71%), Positives = 120/146 (82%) Query: 1 MLKNLHPLLNADVLYALRAMGHGDELVLCDANFPADSVARQTVLGKVLRIDGVGTTEAAR 60 MLKNL PLLNAD+L+ALR+MGHGDELV+CDANFPAD+VAR TVLGK LR+DGV + A R Sbjct: 1 MLKNLDPLLNADILHALRSMGHGDELVICDANFPADAVARDTVLGKPLRLDGVTSPRAIR 60 Query: 61 AILSVLPLDNAVEQPVRRMEIMGEPATIPPVQQELQQEVNQAEGRARPLGSIERFAFYEA 120 A+LSVLPLD +E P RME++GEP TIP VQ+E Q EVN AEGR P SIERFAFYE Sbjct: 61 AVLSVLPLDTFIEHPASRMEVVGEPHTIPAVQREAQVEVNAAEGREVPFVSIERFAFYER 120 Query: 121 AKKAYCVIATGERRFYGCFLLKKGVL 146 A++AYCVIATGE R YGCF+ KGVL Sbjct: 121 ARRAYCVIATGEERGYGCFVFTKGVL 146 >ref|YP_004230589.1| RbsD or FucU transport [Burkholderia sp. CCGE1001] gb|ADX57529.1| RbsD or FucU transport [Burkholderia sp. CCGE1001] Length = 154 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 103/146 (70%), Positives = 119/146 (81%) Query: 1 MLKNLHPLLNADVLYALRAMGHGDELVLCDANFPADSVARQTVLGKVLRIDGVGTTEAAR 60 MLKNL PLLNAD+L+ALR+MGHGDE+V+CDANFP DSVA TVLGK+LR+DGV + A R Sbjct: 1 MLKNLDPLLNADILHALRSMGHGDEVVICDANFPGDSVAHSTVLGKLLRLDGVSSPRAVR 60 Query: 61 AILSVLPLDNAVEQPVRRMEIMGEPATIPPVQQELQQEVNQAEGRARPLGSIERFAFYEA 120 A+LSVLPLD +EQP RME++GEP T+P VQ+E Q EVN AEGR P IERFAFYE Sbjct: 61 AVLSVLPLDTFIEQPASRMEVVGEPHTLPAVQREAQIEVNAAEGREVPFAPIERFAFYER 120 Query: 121 AKKAYCVIATGERRFYGCFLLKKGVL 146 A+KAYCVIATGE R YGCF+ KGVL Sbjct: 121 ARKAYCVIATGEERGYGCFVFTKGVL 146