BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0542.p (244 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774449.1| DeoR family transcription repressor protein ... 501 e-140 ref|YP_004752848.1| deoxyribose operon repressor, deoR family [C... 330 8e-89 ref|YP_004153415.1| DeoR family transcriptional regulator [Vario... 304 7e-81 ref|YP_001243560.1| DeoR family transcriptional regulator [Brady... 266 2e-69 ref|ZP_06896960.1| DeoR family transcriptional regulator [Roseom... 244 9e-63 ref|YP_427391.1| DeoR family transcriptional regulator [Rhodospi... 220 2e-55 gb|AEO48833.1| DeoR family transcriptional regulator [Rhodospiri... 219 2e-55 ref|NP_355823.1| DeoR family transcriptional regulator [Agrobact... 209 3e-52 ref|YP_004280623.1| DeoR family transcriptional regulator [Agrob... 207 1e-51 ref|ZP_02887424.1| transcriptional regulator, DeoR family [Burkh... 205 6e-51 >ref|YP_003774449.1| DeoR family transcription repressor protein [Herbaspirillum seropedicae SmR1] gb|ADJ62541.1| DeoR family transcription repressor protein [Herbaspirillum seropedicae SmR1] Length = 271 Score = 501 bits (1290), Expect = e-140, Method: Compositional matrix adjust. Identities = 244/244 (100%), Positives = 244/244 (100%) Query: 1 MQEMIRDHGPTPLSRIADVLGVTVMTVRRDLAGEDSPLICLGGHVLEASPGGSENRYSID 60 MQEMIRDHGPTPLSRIADVLGVTVMTVRRDLAGEDSPLICLGGHVLEASPGGSENRYSID Sbjct: 28 MQEMIRDHGPTPLSRIADVLGVTVMTVRRDLAGEDSPLICLGGHVLEASPGGSENRYSID 87 Query: 61 READQHAQRKRLACQHAARRVVEGDSLFIDCGTTMTHLAEALPPEIGLSVICYSLNIANI 120 READQHAQRKRLACQHAARRVVEGDSLFIDCGTTMTHLAEALPPEIGLSVICYSLNIANI Sbjct: 88 READQHAQRKRLACQHAARRVVEGDSLFIDCGTTMTHLAEALPPEIGLSVICYSLNIANI 147 Query: 121 VSQRPNTQVILLGGLYHPSSASFASEEGVAYLKRLGVNKAFLSAGGVDARRGVSCSNFHE 180 VSQRPNTQVILLGGLYHPSSASFASEEGVAYLKRLGVNKAFLSAGGVDARRGVSCSNFHE Sbjct: 148 VSQRPNTQVILLGGLYHPSSASFASEEGVAYLKRLGVNKAFLSAGGVDARRGVSCSNFHE 207 Query: 181 VPIKQAAIESAAQCYVVIDQSKLGRFRPAFYSTLEVFSGIVVGGTPEQDQLDLFSDFPLE 240 VPIKQAAIESAAQCYVVIDQSKLGRFRPAFYSTLEVFSGIVVGGTPEQDQLDLFSDFPLE Sbjct: 208 VPIKQAAIESAAQCYVVIDQSKLGRFRPAFYSTLEVFSGIVVGGTPEQDQLDLFSDFPLE 267 Query: 241 VVAG 244 VVAG Sbjct: 268 VVAG 271 >ref|YP_004752848.1| deoxyribose operon repressor, deoR family [Collimonas fungivorans Ter331] gb|AEK62025.1| Deoxyribose operon repressor, DeoR family [Collimonas fungivorans Ter331] Length = 344 Score = 330 bits (847), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 159/243 (65%), Positives = 188/243 (77%) Query: 1 MQEMIRDHGPTPLSRIADVLGVTVMTVRRDLAGEDSPLICLGGHVLEASPGGSENRYSID 60 MQE+I GPT L ++A+ LGVT MT+RRDLA DSPL CLGG VLEA+ ++ +YS+D Sbjct: 98 MQELINSKGPTQLGKVAEQLGVTEMTIRRDLASADSPLACLGGFVLEATLPSADEKYSLD 157 Query: 61 READQHAQRKRLACQHAARRVVEGDSLFIDCGTTMTHLAEALPPEIGLSVICYSLNIANI 120 E D H RKRLACQ AA+ V +GDSLFIDCGTTM H AEALPP + LSV+CYS+NIA I Sbjct: 158 EEIDHHTVRKRLACQRAAQWVEDGDSLFIDCGTTMIHFAEALPPAMTLSVVCYSMNIAAI 217 Query: 121 VSQRPNTQVILLGGLYHPSSASFASEEGVAYLKRLGVNKAFLSAGGVDARRGVSCSNFHE 180 VS+RPNTQ+ILLGGLYHPSSA+F S+E V YL LGVNKAFLSAGG D +RG SCSNFHE Sbjct: 218 VSRRPNTQLILLGGLYHPSSATFYSDEAVHYLGSLGVNKAFLSAGGADLQRGASCSNFHE 277 Query: 181 VPIKQAAIESAAQCYVVIDQSKLGRFRPAFYSTLEVFSGIVVGGTPEQDQLDLFSDFPLE 240 V +KQAAI SA Q ++V+D+SKLGR RPAF+S L+VFS I VGG P+ F PL+ Sbjct: 278 VAVKQAAIRSAGQSFLVVDESKLGRVRPAFFSPLDVFSRIAVGGVPDAALRKQFKGLPLD 337 Query: 241 VVA 243 V A Sbjct: 338 VAA 340 >ref|YP_004153415.1| DeoR family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU35304.1| transcriptional regulator, DeoR family [Variovorax paradoxus EPS] Length = 260 Score = 304 bits (779), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 143/240 (59%), Positives = 183/240 (76%), Gaps = 1/240 (0%) Query: 1 MQEMIRDHGPTPLSRIADVLGVTVMTVRRDLAGEDSPLICLGGHVLEASPGGSENRYSID 60 MQE++ GP P+ + A L VT MT+RRDL+ DSPL LGG+VL + G+E RYS+D Sbjct: 17 MQELVEAGGPLPIKQAAQRLDVTEMTIRRDLSSADSPLSVLGGYVLATTLPGAE-RYSLD 75 Query: 61 READQHAQRKRLACQHAARRVVEGDSLFIDCGTTMTHLAEALPPEIGLSVICYSLNIANI 120 +DQHA KRLAC+ AA V DSLFIDCGTTM H AEALPP++ LSV+CYS NIA + Sbjct: 76 EASDQHAANKRLACERAAEWVQPHDSLFIDCGTTMVHFAEALPPDMPLSVVCYSTNIAAV 135 Query: 121 VSQRPNTQVILLGGLYHPSSASFASEEGVAYLKRLGVNKAFLSAGGVDARRGVSCSNFHE 180 +S+RPNTQ++L+GGLYHPSSA+F S+EG+ YL +LGVNKAF+SAGG+D RG SCSNFHE Sbjct: 136 LSRRPNTQLMLMGGLYHPSSATFFSDEGLQYLDKLGVNKAFISAGGLDVARGASCSNFHE 195 Query: 181 VPIKQAAIESAAQCYVVIDQSKLGRFRPAFYSTLEVFSGIVVGGTPEQDQLDLFSDFPLE 240 VP+KQAAI SA++ ++++D+SKLG RPAF+S L+ F+ IVVGG P F + P+E Sbjct: 196 VPVKQAAIRSASESFLIVDESKLGTLRPAFFSPLQAFARIVVGGAPAAAVKKQFKELPVE 255 >ref|YP_001243560.1| DeoR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ39654.1| transcriptional regulator, DeoR family [Bradyrhizobium sp. BTAi1] Length = 264 Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 132/241 (54%), Positives = 173/241 (71%), Gaps = 3/241 (1%) Query: 5 IRDHGPTPLSRIADVLGVTVMTVRRDLAGEDSPLICLGGHVLEA-SPGGSENRYSIDREA 63 + G L AD+L V+ MTVRRDLAG ++ L LGG+V+ A SP G +Y+ ++E Sbjct: 24 VETSGALHLKDAADLLKVSEMTVRRDLAGPEAALALLGGYVVNAASPTG--IKYAFEQEI 81 Query: 64 DQHAQRKRLACQHAARRVVEGDSLFIDCGTTMTHLAEALPPEIGLSVICYSLNIANIVSQ 123 DQH Q KRLAC+ AA + EGD++FIDCGTTM LA+ LP ++ LSVICYSLN+ IV++ Sbjct: 82 DQHTQDKRLACRSAAASIKEGDTIFIDCGTTMQSLADCLPEDMPLSVICYSLNVVTIVTR 141 Query: 124 RPNTQVILLGGLYHPSSASFASEEGVAYLKRLGVNKAFLSAGGVDARRGVSCSNFHEVPI 183 RP TQV+L+GGLYHPSS SF+S++G++YL+RLGVNKAF+SAGG+ RG SCSNFHEV I Sbjct: 142 RPATQVMLMGGLYHPSSQSFSSDDGLSYLRRLGVNKAFISAGGLHWTRGASCSNFHEVAI 201 Query: 184 KQAAIESAAQCYVVIDQSKLGRFRPAFYSTLEVFSGIVVGGTPEQDQLDLFSDFPLEVVA 243 KQA I +A + +V+D SKLG +PAF+S + FS I+VGG + F P+E V Sbjct: 202 KQAVIATAMESILVVDASKLGSLKPAFFSDVSSFSRIIVGGAVPSETRKHFRGLPVEYVT 261 Query: 244 G 244 G Sbjct: 262 G 262 >ref|ZP_06896960.1| DeoR family transcriptional regulator [Roseomonas cervicalis ATCC 49957] gb|EFH11346.1| DeoR family transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 272 Score = 244 bits (623), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 118/226 (52%), Positives = 162/226 (71%), Gaps = 4/226 (1%) Query: 1 MQEMIRDHGPTPLSRIADVLGVTVMTVRRDLA----GEDSPLICLGGHVLEASPGGSENR 56 ++ ++++ GP L A LGV+ MT+RRDLA E L LGGHV+ A Sbjct: 21 LEALLQESGPARLEEAARQLGVSSMTLRRDLARPGLAESRGLALLGGHVVPARASPRPGP 80 Query: 57 YSIDREADQHAQRKRLACQHAARRVVEGDSLFIDCGTTMTHLAEALPPEIGLSVICYSLN 116 Y+++RE DQHA KR A QHAAR V EGD+LFIDCGTT HL +ALPP + L+V+CY+LN Sbjct: 81 YALEREQDQHAAAKRQAAQHAARLVREGDTLFIDCGTTTPHLVQALPPGLALTVVCYALN 140 Query: 117 IANIVSQRPNTQVILLGGLYHPSSASFASEEGVAYLKRLGVNKAFLSAGGVDARRGVSCS 176 IA ++++RPNT+++LLGGLYHP + +F+S+E +A L+RL +N AFLSA GVDA +G +C Sbjct: 141 IATLLARRPNTRLVLLGGLYHPGATTFSSDESLASLRRLRLNTAFLSAAGVDAAQGATCV 200 Query: 177 NFHEVPIKQAAIESAAQCYVVIDQSKLGRFRPAFYSTLEVFSGIVV 222 +F+EVP+KQ A+ AAQ +V+D SKLG+ RPA+++ L FS IV Sbjct: 201 HFNEVPVKQMALAGAAQRVLVVDGSKLGQLRPAYFAPLSAFSRIVT 246 >ref|YP_427391.1| DeoR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gb|ABC23104.1| transcriptional regulator, DeoR family [Rhodospirillum rubrum ATCC 11170] Length = 259 Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 105/211 (49%), Positives = 151/211 (71%), Gaps = 4/211 (1%) Query: 13 LSRIADVLGVTVMTVRRDLAGEDSPLICLGGHVL--EASPGGSENRYSIDREADQHAQRK 70 L A +LGV+ MTVRRD+A D L LGG+++ + +PGG Y E H ++K Sbjct: 27 LKEAAKMLGVSEMTVRRDIATGDGSLTYLGGYIVAGQETPGGMG--YLFATELASHTEKK 84 Query: 71 RLACQHAARRVVEGDSLFIDCGTTMTHLAEALPPEIGLSVICYSLNIANIVSQRPNTQVI 130 R AC AA + GD++F+DCGTTM HLA +P ++ L+V+CY++N+A I+ ++PN +V+ Sbjct: 85 RDACTLAASLIEPGDTVFLDCGTTMPHLASRIPTDLRLTVVCYAINVAEILCKKPNLKVV 144 Query: 131 LLGGLYHPSSASFASEEGVAYLKRLGVNKAFLSAGGVDARRGVSCSNFHEVPIKQAAIES 190 LLGG+YHPSSA+F+SEE + L +G+NKAF+SAGG+ A RGVSCSNFHEVPIK+AA+++ Sbjct: 145 LLGGIYHPSSATFSSEEALGTLANIGINKAFISAGGLHADRGVSCSNFHEVPIKRAAMQN 204 Query: 191 AAQCYVVIDQSKLGRFRPAFYSTLEVFSGIV 221 A + VV+D +K GR +PAF ++ F +V Sbjct: 205 AVRRIVVLDSTKFGRVKPAFIGQIDDFDTVV 235 >gb|AEO48833.1| DeoR family transcriptional regulator [Rhodospirillum rubrum F11] Length = 246 Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 105/211 (49%), Positives = 151/211 (71%), Gaps = 4/211 (1%) Query: 13 LSRIADVLGVTVMTVRRDLAGEDSPLICLGGHVL--EASPGGSENRYSIDREADQHAQRK 70 L A +LGV+ MTVRRD+A D L LGG+++ + +PGG Y E H ++K Sbjct: 14 LKEAAKMLGVSEMTVRRDIATGDGSLTYLGGYIVAGQETPGGMG--YLFATELASHTEKK 71 Query: 71 RLACQHAARRVVEGDSLFIDCGTTMTHLAEALPPEIGLSVICYSLNIANIVSQRPNTQVI 130 R AC AA + GD++F+DCGTTM HLA +P ++ L+V+CY++N+A I+ ++PN +V+ Sbjct: 72 RDACTLAASLIEPGDTVFLDCGTTMPHLASRIPTDLRLTVVCYAINVAEILCKKPNLKVV 131 Query: 131 LLGGLYHPSSASFASEEGVAYLKRLGVNKAFLSAGGVDARRGVSCSNFHEVPIKQAAIES 190 LLGG+YHPSSA+F+SEE + L +G+NKAF+SAGG+ A RGVSCSNFHEVPIK+AA+++ Sbjct: 132 LLGGIYHPSSATFSSEEALGTLANIGINKAFISAGGLHADRGVSCSNFHEVPIKRAAMQN 191 Query: 191 AAQCYVVIDQSKLGRFRPAFYSTLEVFSGIV 221 A + VV+D +K GR +PAF ++ F +V Sbjct: 192 AVRRIVVLDSTKFGRVKPAFIGQIDDFDTVV 222 >ref|NP_355823.1| DeoR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gb|AAK88608.1| transcriptional regulator, DeoR family [Agrobacterium tumefaciens str. C58] Length = 243 Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 98/218 (44%), Positives = 149/218 (68%) Query: 4 MIRDHGPTPLSRIADVLGVTVMTVRRDLAGEDSPLICLGGHVLEASPGGSENRYSIDREA 63 ++++ G L A LGV+ +T+RRD+A + L CLGG+++ G + Y +++E Sbjct: 17 LVQETGVLRLRDAASRLGVSEITIRRDIAADGERLSCLGGYIIPVQDGTVSSDYVLEQEK 76 Query: 64 DQHAQRKRLACQHAARRVVEGDSLFIDCGTTMTHLAEALPPEIGLSVICYSLNIANIVSQ 123 D HA K AC+ AA + D++FIDCGTTM HLA +P ++VICYSLN+A ++ Sbjct: 77 DSHATAKARACRQAAVMIEPYDTVFIDCGTTMPHLARQIPANAHVTVICYSLNVAEELAS 136 Query: 124 RPNTQVILLGGLYHPSSASFASEEGVAYLKRLGVNKAFLSAGGVDARRGVSCSNFHEVPI 183 R + ++I+LGG+YHP +ASF+ +EG+ LKR+ +NKAFLSAGGVD + GV+CS+FHEVPI Sbjct: 137 RNDVRLIMLGGVYHPEAASFSGDEGIEVLKRININKAFLSAGGVDEQHGVTCSHFHEVPI 196 Query: 184 KQAAIESAAQCYVVIDQSKLGRFRPAFYSTLEVFSGIV 221 KQ ++ + Q ++V+D SK + R A Y+++ F+ IV Sbjct: 197 KQMVMQRSMQKHLVVDSSKFSKVRAARYASIGDFNSIV 234 >ref|YP_004280623.1| DeoR family transcriptional regulator [Agrobacterium sp. H13-3] gb|ADY68245.1| transcriptional regulator, DeoR family [Agrobacterium sp. H13-3] Length = 242 Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 96/218 (44%), Positives = 147/218 (67%) Query: 4 MIRDHGPTPLSRIADVLGVTVMTVRRDLAGEDSPLICLGGHVLEASPGGSENRYSIDREA 63 ++++ G L A LGV+ +T+RRD+A + L CLGG+++ G + Y +++E Sbjct: 17 LVQETGVLRLRDAASRLGVSEITIRRDIAADGQRLSCLGGYIIPVQDGAISSDYVLEQEK 76 Query: 64 DQHAQRKRLACQHAARRVVEGDSLFIDCGTTMTHLAEALPPEIGLSVICYSLNIANIVSQ 123 D HA K AC AA + D++FIDCGTTM HLA +P ++VICYSLN+A ++ Sbjct: 77 DSHATAKARACTQAAALIEPYDTVFIDCGTTMPHLARQIPANAHVTVICYSLNVAEELAS 136 Query: 124 RPNTQVILLGGLYHPSSASFASEEGVAYLKRLGVNKAFLSAGGVDARRGVSCSNFHEVPI 183 R + ++I+LGG+YHP +ASF+ +EG+ LKR+ +NKAFLSAGGVD + GV+CS+FHEVPI Sbjct: 137 RTDVRLIMLGGVYHPEAASFSGDEGIEVLKRININKAFLSAGGVDEQHGVTCSHFHEVPI 196 Query: 184 KQAAIESAAQCYVVIDQSKLGRFRPAFYSTLEVFSGIV 221 KQ ++ + Q ++V+D SK + R A Y+ + F+ ++ Sbjct: 197 KQMVMQRSVQKHLVVDSSKFRKVRAARYAAIGDFNSVI 234 >ref|ZP_02887424.1| transcriptional regulator, DeoR family [Burkholderia graminis C4D1M] gb|EDT06971.1| transcriptional regulator, DeoR family [Burkholderia graminis C4D1M] Length = 241 Score = 205 bits (521), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 101/214 (47%), Positives = 146/214 (68%), Gaps = 2/214 (0%) Query: 17 ADVLGVTVMTVRRDLAGEDSPLICLGGHVLEASPGGSENRYSIDREADQHAQRKRLACQH 76 A +LGV+ MTVRRD+A LGG+++ A+ + YS+++E D AQ K A Sbjct: 26 ATLLGVSEMTVRRDIAANSDRFTYLGGYIVSATDVPNNAGYSLEQEKDHFAQAKADASSI 85 Query: 77 AARRVVEGDSLFIDCGTTMTHLAEALPPEIGLSVICYSLNIANIVSQRPNTQVILLGGLY 136 AA + + ++LFIDCGTT+ LA +PPE ++V+CYSLN+A I+ ++PN ++ILLGG+Y Sbjct: 86 AAGLIGDNETLFIDCGTTLAALARLVPPERHVTVVCYSLNVAEILRRKPNVRMILLGGVY 145 Query: 137 HPSSASFASEEGVAYLKRLGVNKAFLSAGGVDARRGVSCSNFHEVPIKQAAIESAAQCYV 196 PSS SFA EE + L+R+G+NKAF+SAGGVD RGV+C NFHEV +KQAA+ SA + ++ Sbjct: 146 VPSSDSFAGEESLEMLRRMGINKAFISAGGVDTARGVTCWNFHEVAVKQAAMASAVERHL 205 Query: 197 VIDQSKLGRFRPAFYSTLEVFSGIVV--GGTPEQ 228 V+D+SK G + +S +E F I+ G P + Sbjct: 206 VVDRSKFGVVKAVRFSQIEDFDSIITEEGQAPRK 239